Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS11535 and RPSI07_RS11540 are separated by 2 nucleotides RPSI07_RS11540 and RPSI07_RS11545 are separated by 1 nucleotides
RPSI07_RS11535: RPSI07_RS11535 - TonB-dependent siderophore receptor, at 784,855 to 786,924
_RS11535
RPSI07_RS11540: RPSI07_RS11540 - DUF1624 domain-containing protein, at 786,927 to 788,069
_RS11540
RPSI07_RS11545: RPSI07_RS11545 - EmrB/QacA family drug resistance transporter, at 788,071 to 789,606
_RS11545
Position (kb) 786
787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 785.932 kb on + strand, within RPSI07_RS11535 at 785.932 kb on + strand, within RPSI07_RS11535 at 785.932 kb on + strand, within RPSI07_RS11535 at 785.933 kb on - strand, within RPSI07_RS11535 at 785.933 kb on - strand, within RPSI07_RS11535 at 785.989 kb on + strand, within RPSI07_RS11535 at 785.990 kb on - strand, within RPSI07_RS11535 at 785.990 kb on - strand, within RPSI07_RS11535 at 786.016 kb on + strand, within RPSI07_RS11535 at 786.016 kb on + strand, within RPSI07_RS11535 at 786.017 kb on - strand, within RPSI07_RS11535 at 786.211 kb on + strand, within RPSI07_RS11535 at 786.235 kb on + strand, within RPSI07_RS11535 at 786.236 kb on - strand, within RPSI07_RS11535 at 786.236 kb on - strand, within RPSI07_RS11535 at 786.271 kb on - strand, within RPSI07_RS11535 at 786.271 kb on - strand, within RPSI07_RS11535 at 786.347 kb on - strand, within RPSI07_RS11535 at 786.406 kb on + strand, within RPSI07_RS11535 at 786.547 kb on + strand, within RPSI07_RS11535 at 786.548 kb on - strand, within RPSI07_RS11535 at 786.548 kb on - strand, within RPSI07_RS11535 at 786.548 kb on - strand, within RPSI07_RS11535 at 786.548 kb on - strand, within RPSI07_RS11535 at 786.554 kb on - strand, within RPSI07_RS11535 at 786.647 kb on - strand, within RPSI07_RS11535 at 786.647 kb on - strand, within RPSI07_RS11535 at 786.701 kb on - strand, within RPSI07_RS11535 at 786.724 kb on - strand at 786.724 kb on - strand at 786.754 kb on + strand at 786.754 kb on + strand at 786.755 kb on - strand at 786.755 kb on - strand at 786.778 kb on + strand at 786.779 kb on - strand at 786.842 kb on - strand at 786.842 kb on - strand at 786.844 kb on + strand at 786.844 kb on + strand at 786.845 kb on - strand at 786.913 kb on + strand at 786.913 kb on + strand at 786.914 kb on - strand at 786.914 kb on - strand at 787.281 kb on + strand, within RPSI07_RS11540 at 787.281 kb on + strand, within RPSI07_RS11540 at 787.282 kb on - strand, within RPSI07_RS11540 at 787.282 kb on - strand, within RPSI07_RS11540 at 787.499 kb on + strand, within RPSI07_RS11540 at 787.499 kb on + strand, within RPSI07_RS11540 at 787.499 kb on + strand, within RPSI07_RS11540 at 787.500 kb on - strand, within RPSI07_RS11540 at 787.500 kb on - strand, within RPSI07_RS11540 at 787.500 kb on - strand, within RPSI07_RS11540 at 787.563 kb on + strand, within RPSI07_RS11540 at 787.564 kb on - strand, within RPSI07_RS11540 at 787.659 kb on + strand, within RPSI07_RS11540 at 787.863 kb on + strand, within RPSI07_RS11540 at 787.863 kb on + strand, within RPSI07_RS11540 at 787.863 kb on + strand, within RPSI07_RS11540 at 787.864 kb on - strand, within RPSI07_RS11540 at 787.864 kb on - strand, within RPSI07_RS11540 at 787.878 kb on + strand, within RPSI07_RS11540 at 787.878 kb on + strand, within RPSI07_RS11540 at 787.879 kb on - strand, within RPSI07_RS11540 at 787.896 kb on + strand, within RPSI07_RS11540 at 788.001 kb on + strand at 788.001 kb on + strand at 788.001 kb on + strand at 788.002 kb on - strand at 788.177 kb on + strand at 788.177 kb on + strand at 788.177 kb on + strand at 788.177 kb on + strand at 788.178 kb on - strand at 788.178 kb on - strand at 788.270 kb on + strand, within RPSI07_RS11545 at 788.270 kb on + strand, within RPSI07_RS11545 at 788.270 kb on + strand, within RPSI07_RS11545 at 788.270 kb on + strand, within RPSI07_RS11545 at 788.271 kb on - strand, within RPSI07_RS11545 at 788.271 kb on - strand, within RPSI07_RS11545 at 788.352 kb on + strand, within RPSI07_RS11545 at 788.402 kb on + strand, within RPSI07_RS11545 at 788.402 kb on + strand, within RPSI07_RS11545 at 788.738 kb on + strand, within RPSI07_RS11545 at 788.751 kb on - strand, within RPSI07_RS11545 at 788.884 kb on + strand, within RPSI07_RS11545
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 785,932 + RPSI07_RS11535 0.52 -0.4 785,932 + RPSI07_RS11535 0.52 -0.4 785,932 + RPSI07_RS11535 0.52 -0.4 785,933 - RPSI07_RS11535 0.52 -0.7 785,933 - RPSI07_RS11535 0.52 -1.1 785,989 + RPSI07_RS11535 0.55 +0.3 785,990 - RPSI07_RS11535 0.55 +0.3 785,990 - RPSI07_RS11535 0.55 +2.9 786,016 + RPSI07_RS11535 0.56 +0.9 786,016 + RPSI07_RS11535 0.56 -0.9 786,017 - RPSI07_RS11535 0.56 +1.2 786,211 + RPSI07_RS11535 0.66 -0.8 786,235 + RPSI07_RS11535 0.67 -0.5 786,236 - RPSI07_RS11535 0.67 -1.5 786,236 - RPSI07_RS11535 0.67 -1.5 786,271 - RPSI07_RS11535 0.68 +0.1 786,271 - RPSI07_RS11535 0.68 +2.9 786,347 - RPSI07_RS11535 0.72 -0.7 786,406 + RPSI07_RS11535 0.75 -2.7 786,547 + RPSI07_RS11535 0.82 +1.1 786,548 - RPSI07_RS11535 0.82 -2.0 786,548 - RPSI07_RS11535 0.82 -2.6 786,548 - RPSI07_RS11535 0.82 -2.2 786,548 - RPSI07_RS11535 0.82 +1.9 786,554 - RPSI07_RS11535 0.82 -1.4 786,647 - RPSI07_RS11535 0.87 +0.1 786,647 - RPSI07_RS11535 0.87 +1.2 786,701 - RPSI07_RS11535 0.89 -1.7 786,724 - -1.2 786,724 - -1.2 786,754 + +0.1 786,754 + +0.4 786,755 - -0.2 786,755 - -0.7 786,778 + -0.5 786,779 - -0.7 786,842 - -1.4 786,842 - +1.1 786,844 + +0.5 786,844 + +1.5 786,845 - +0.9 786,913 + -2.8 786,913 + +1.0 786,914 - +1.2 786,914 - +0.4 787,281 + RPSI07_RS11540 0.31 +0.1 787,281 + RPSI07_RS11540 0.31 -0.7 787,282 - RPSI07_RS11540 0.31 -2.1 787,282 - RPSI07_RS11540 0.31 -2.7 787,499 + RPSI07_RS11540 0.50 +2.3 787,499 + RPSI07_RS11540 0.50 +0.1 787,499 + RPSI07_RS11540 0.50 +1.0 787,500 - RPSI07_RS11540 0.50 -2.1 787,500 - RPSI07_RS11540 0.50 -0.4 787,500 - RPSI07_RS11540 0.50 -0.4 787,563 + RPSI07_RS11540 0.56 -1.6 787,564 - RPSI07_RS11540 0.56 +2.0 787,659 + RPSI07_RS11540 0.64 -2.4 787,863 + RPSI07_RS11540 0.82 -0.1 787,863 + RPSI07_RS11540 0.82 -1.2 787,863 + RPSI07_RS11540 0.82 +2.0 787,864 - RPSI07_RS11540 0.82 -1.0 787,864 - RPSI07_RS11540 0.82 +0.5 787,878 + RPSI07_RS11540 0.83 +2.9 787,878 + RPSI07_RS11540 0.83 +2.9 787,879 - RPSI07_RS11540 0.83 -0.1 787,896 + RPSI07_RS11540 0.85 -0.2 788,001 + -2.9 788,001 + +0.4 788,001 + +0.7 788,002 - -0.6 788,177 + +2.9 788,177 + +0.3 788,177 + -0.3 788,177 + -1.7 788,178 - +2.9 788,178 - +0.9 788,270 + RPSI07_RS11545 0.13 +0.3 788,270 + RPSI07_RS11545 0.13 -2.5 788,270 + RPSI07_RS11545 0.13 +2.9 788,270 + RPSI07_RS11545 0.13 +0.1 788,271 - RPSI07_RS11545 0.13 -3.3 788,271 - RPSI07_RS11545 0.13 -0.7 788,352 + RPSI07_RS11545 0.18 -0.5 788,402 + RPSI07_RS11545 0.22 +0.2 788,402 + RPSI07_RS11545 0.22 +5.0 788,738 + RPSI07_RS11545 0.43 -3.5 788,751 - RPSI07_RS11545 0.44 -3.4 788,884 + RPSI07_RS11545 0.53 +0.1
Or see this region's nucleotide sequence