Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS11400

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS11395 and RPSI07_RS11400 are separated by 10 nucleotidesRPSI07_RS11400 and RPSI07_RS11405 are separated by 13 nucleotidesRPSI07_RS11405 and RPSI07_RS11410 overlap by 20 nucleotides RPSI07_RS11395: RPSI07_RS11395 - L-arabinose ABC transporter ATP-binding protein AraG, at 752,659 to 754,182 _RS11395 RPSI07_RS11400: RPSI07_RS11400 - L-arabinose ABC transporter permease AraH, at 754,193 to 755,200 _RS11400 RPSI07_RS11405: RPSI07_RS11405 - SMP-30/gluconolactonase/LRE family protein, at 755,214 to 756,125 _RS11405 RPSI07_RS11410: RPSI07_RS11410 - aldose 1-epimerase, at 756,106 to 756,996 _RS11410 Position (kb) 754 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 753.241 kb on + strand, within RPSI07_RS11395at 753.241 kb on + strand, within RPSI07_RS11395at 753.241 kb on + strand, within RPSI07_RS11395at 753.241 kb on + strand, within RPSI07_RS11395at 753.241 kb on + strand, within RPSI07_RS11395at 753.241 kb on + strand, within RPSI07_RS11395at 753.241 kb on + strand, within RPSI07_RS11395at 753.241 kb on + strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.242 kb on - strand, within RPSI07_RS11395at 753.556 kb on + strand, within RPSI07_RS11395at 753.556 kb on + strand, within RPSI07_RS11395at 753.557 kb on - strand, within RPSI07_RS11395at 753.557 kb on - strand, within RPSI07_RS11395at 753.793 kb on + strand, within RPSI07_RS11395at 753.793 kb on + strand, within RPSI07_RS11395at 753.793 kb on + strand, within RPSI07_RS11395at 753.794 kb on - strand, within RPSI07_RS11395at 753.794 kb on - strand, within RPSI07_RS11395at 753.794 kb on - strand, within RPSI07_RS11395at 753.794 kb on - strand, within RPSI07_RS11395at 753.794 kb on - strandat 753.794 kb on - strand, within RPSI07_RS11395at 753.794 kb on - strand, within RPSI07_RS11395at 753.967 kb on + strand, within RPSI07_RS11395at 753.967 kb on + strand, within RPSI07_RS11395at 753.968 kb on - strand, within RPSI07_RS11395at 753.979 kb on + strand, within RPSI07_RS11395at 753.979 kb on + strand, within RPSI07_RS11395at 753.980 kb on - strand, within RPSI07_RS11395at 753.980 kb on - strand, within RPSI07_RS11395at 753.980 kb on - strand, within RPSI07_RS11395at 753.980 kb on - strand, within RPSI07_RS11395at 754.341 kb on + strand, within RPSI07_RS11400at 754.342 kb on - strand, within RPSI07_RS11400at 754.346 kb on + strand, within RPSI07_RS11400at 754.346 kb on + strand, within RPSI07_RS11400at 754.346 kb on + strand, within RPSI07_RS11400at 754.346 kb on + strand, within RPSI07_RS11400at 754.347 kb on - strand, within RPSI07_RS11400at 754.347 kb on - strand, within RPSI07_RS11400at 754.347 kb on - strand, within RPSI07_RS11400at 754.347 kb on - strand, within RPSI07_RS11400at 754.347 kb on - strand, within RPSI07_RS11400at 754.347 kb on - strand, within RPSI07_RS11400at 754.347 kb on - strand, within RPSI07_RS11400at 754.348 kb on - strand, within RPSI07_RS11400at 754.802 kb on + strand, within RPSI07_RS11400at 754.802 kb on + strand, within RPSI07_RS11400at 754.803 kb on - strand, within RPSI07_RS11400at 755.107 kb on + strandat 755.120 kb on + strandat 755.120 kb on + strandat 755.121 kb on - strandat 755.121 kb on - strandat 755.126 kb on + strandat 755.127 kb on - strandat 755.544 kb on + strand, within RPSI07_RS11405at 755.544 kb on + strand, within RPSI07_RS11405at 755.544 kb on + strand, within RPSI07_RS11405at 755.545 kb on - strand, within RPSI07_RS11405at 755.545 kb on - strand, within RPSI07_RS11405at 755.545 kb on - strand, within RPSI07_RS11405at 755.545 kb on - strand, within RPSI07_RS11405at 755.596 kb on - strand, within RPSI07_RS11405at 755.691 kb on + strand, within RPSI07_RS11405at 755.691 kb on + strand, within RPSI07_RS11405at 755.691 kb on + strand, within RPSI07_RS11405at 755.691 kb on + strand, within RPSI07_RS11405at 755.692 kb on - strand, within RPSI07_RS11405at 755.692 kb on - strand, within RPSI07_RS11405at 755.692 kb on - strand, within RPSI07_RS11405at 755.692 kb on - strand, within RPSI07_RS11405at 755.692 kb on - strand, within RPSI07_RS11405at 755.692 kb on - strand, within RPSI07_RS11405at 755.734 kb on - strand, within RPSI07_RS11405at 755.922 kb on + strand, within RPSI07_RS11405at 755.979 kb on - strand, within RPSI07_RS11405at 755.986 kb on - strand, within RPSI07_RS11405at 755.986 kb on - strand, within RPSI07_RS11405at 756.068 kb on + strandat 756.069 kb on - strandat 756.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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753,241 + RPSI07_RS11395 0.38 -0.7
753,241 + RPSI07_RS11395 0.38 +0.6
753,241 + RPSI07_RS11395 0.38 -2.2
753,241 + RPSI07_RS11395 0.38 -2.4
753,241 + RPSI07_RS11395 0.38 +0.7
753,241 + RPSI07_RS11395 0.38 +0.4
753,241 + RPSI07_RS11395 0.38 -1.5
753,241 + RPSI07_RS11395 0.38 +0.3
753,242 - RPSI07_RS11395 0.38 +0.1
753,242 - RPSI07_RS11395 0.38 +1.9
753,242 - RPSI07_RS11395 0.38 -1.2
753,242 - RPSI07_RS11395 0.38 +0.1
753,242 - RPSI07_RS11395 0.38 +3.5
753,242 - RPSI07_RS11395 0.38 -0.9
753,242 - RPSI07_RS11395 0.38 -1.0
753,242 - RPSI07_RS11395 0.38 -1.6
753,556 + RPSI07_RS11395 0.59 +0.9
753,556 + RPSI07_RS11395 0.59 -0.1
753,557 - RPSI07_RS11395 0.59 -0.7
753,557 - RPSI07_RS11395 0.59 +0.9
753,793 + RPSI07_RS11395 0.74 +0.3
753,793 + RPSI07_RS11395 0.74 -0.2
753,793 + RPSI07_RS11395 0.74 +1.9
753,794 - RPSI07_RS11395 0.74 -0.6
753,794 - RPSI07_RS11395 0.74 -2.9
753,794 - RPSI07_RS11395 0.74 -0.6
753,794 - RPSI07_RS11395 0.74 -0.2
753,794 - +1.4
753,794 - RPSI07_RS11395 0.74 +0.4
753,794 - RPSI07_RS11395 0.74 -0.5
753,967 + RPSI07_RS11395 0.86 +0.7
753,967 + RPSI07_RS11395 0.86 -1.5
753,968 - RPSI07_RS11395 0.86 -0.4
753,979 + RPSI07_RS11395 0.87 -1.7
753,979 + RPSI07_RS11395 0.87 -1.5
753,980 - RPSI07_RS11395 0.87 +0.1
753,980 - RPSI07_RS11395 0.87 -0.3
753,980 - RPSI07_RS11395 0.87 +2.9
753,980 - RPSI07_RS11395 0.87 -1.9
754,341 + RPSI07_RS11400 0.15 -0.9
754,342 - RPSI07_RS11400 0.15 +1.1
754,346 + RPSI07_RS11400 0.15 -1.3
754,346 + RPSI07_RS11400 0.15 +0.5
754,346 + RPSI07_RS11400 0.15 -0.7
754,346 + RPSI07_RS11400 0.15 -1.2
754,347 - RPSI07_RS11400 0.15 +0.2
754,347 - RPSI07_RS11400 0.15 -1.3
754,347 - RPSI07_RS11400 0.15 -2.7
754,347 - RPSI07_RS11400 0.15 -0.9
754,347 - RPSI07_RS11400 0.15 +2.1
754,347 - RPSI07_RS11400 0.15 +0.1
754,347 - RPSI07_RS11400 0.15 -0.6
754,348 - RPSI07_RS11400 0.15 +0.2
754,802 + RPSI07_RS11400 0.60 -3.1
754,802 + RPSI07_RS11400 0.60 +2.5
754,803 - RPSI07_RS11400 0.61 -0.1
755,107 + +0.4
755,120 + -2.0
755,120 + -2.6
755,121 - +0.0
755,121 - -1.6
755,126 + +2.9
755,127 - +1.9
755,544 + RPSI07_RS11405 0.36 -0.4
755,544 + RPSI07_RS11405 0.36 +0.0
755,544 + RPSI07_RS11405 0.36 +1.1
755,545 - RPSI07_RS11405 0.36 +0.8
755,545 - RPSI07_RS11405 0.36 -0.4
755,545 - RPSI07_RS11405 0.36 -0.9
755,545 - RPSI07_RS11405 0.36 -0.9
755,596 - RPSI07_RS11405 0.42 -1.1
755,691 + RPSI07_RS11405 0.52 +1.4
755,691 + RPSI07_RS11405 0.52 -0.5
755,691 + RPSI07_RS11405 0.52 -2.1
755,691 + RPSI07_RS11405 0.52 +2.6
755,692 - RPSI07_RS11405 0.52 -1.0
755,692 - RPSI07_RS11405 0.52 -1.5
755,692 - RPSI07_RS11405 0.52 +1.3
755,692 - RPSI07_RS11405 0.52 -1.4
755,692 - RPSI07_RS11405 0.52 +0.9
755,692 - RPSI07_RS11405 0.52 +3.9
755,734 - RPSI07_RS11405 0.57 +1.7
755,922 + RPSI07_RS11405 0.78 -0.1
755,979 - RPSI07_RS11405 0.84 -1.2
755,986 - RPSI07_RS11405 0.85 +1.1
755,986 - RPSI07_RS11405 0.85 -0.5
756,068 + +0.9
756,069 - -0.3
756,114 - +0.2

Or see this region's nucleotide sequence