Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS11150 and RPSI07_RS11155 are separated by 26 nucleotides RPSI07_RS11155 and RPSI07_RS11160 overlap by 8 nucleotides
RPSI07_RS11150: RPSI07_RS11150 - PAS domain-containing sensor histidine kinase, at 699,464 to 701,527
_RS11150
RPSI07_RS11155: RPSI07_RS11155 - sigma-54-dependent Fis family transcriptional regulator, at 701,554 to 703,230
_RS11155
RPSI07_RS11160: RPSI07_RS11160 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 703,223 to 703,825
_RS11160
Position (kb) 701
702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 701.352 kb on - strand at 701.352 kb on - strand at 701.352 kb on - strand at 701.869 kb on + strand, within RPSI07_RS11155 at 702.021 kb on - strand, within RPSI07_RS11155 at 702.205 kb on + strand, within RPSI07_RS11155 at 702.466 kb on + strand, within RPSI07_RS11155 at 702.626 kb on - strand, within RPSI07_RS11155 at 702.626 kb on - strand, within RPSI07_RS11155 at 702.626 kb on - strand at 702.914 kb on - strand, within RPSI07_RS11155 at 702.914 kb on - strand, within RPSI07_RS11155 at 703.434 kb on - strand, within RPSI07_RS11160 at 703.634 kb on + strand, within RPSI07_RS11160 at 703.827 kb on - strand at 703.846 kb on + strand at 703.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 701,352 - +0.2 701,352 - +3.0 701,352 - +0.8 701,869 + RPSI07_RS11155 0.19 -0.7 702,021 - RPSI07_RS11155 0.28 +1.0 702,205 + RPSI07_RS11155 0.39 -0.8 702,466 + RPSI07_RS11155 0.54 -0.2 702,626 - RPSI07_RS11155 0.64 +0.4 702,626 - RPSI07_RS11155 0.64 +3.0 702,626 - -0.3 702,914 - RPSI07_RS11155 0.81 -0.4 702,914 - RPSI07_RS11155 0.81 +1.0 703,434 - RPSI07_RS11160 0.35 +3.0 703,634 + RPSI07_RS11160 0.68 +1.4 703,827 - -3.1 703,846 + -1.2 703,897 - -2.2
Or see this region's nucleotide sequence