Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS08645

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS08640 and RPSI07_RS24845 are separated by 345 nucleotidesRPSI07_RS24845 and RPSI07_RS08645 overlap by 4 nucleotidesRPSI07_RS08645 and RPSI07_RS08650 are separated by 34 nucleotides RPSI07_RS08640: RPSI07_RS08640 - 2-hydroxy-3-oxopropionate reductase, at 177,104 to 178,015 _RS08640 RPSI07_RS24845: RPSI07_RS24845 - hypothetical protein, at 178,361 to 178,599 _RS24845 RPSI07_RS08645: RPSI07_RS08645 - hydroxypyruvate isomerase, at 178,596 to 179,378 _RS08645 RPSI07_RS08650: RPSI07_RS08650 - glyoxylate carboligase, at 179,413 to 181,188 _RS08650 Position (kb) 178 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 177.642 kb on + strand, within RPSI07_RS08640at 177.643 kb on - strand, within RPSI07_RS08640at 178.104 kb on - strandat 178.104 kb on - strandat 178.104 kb on - strandat 178.104 kb on - strandat 178.104 kb on - strandat 178.491 kb on - strand, within RPSI07_RS24845at 178.500 kb on + strand, within RPSI07_RS24845at 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.658 kb on - strandat 178.715 kb on + strand, within RPSI07_RS08645at 178.717 kb on + strand, within RPSI07_RS08645at 178.717 kb on + strand, within RPSI07_RS08645at 178.718 kb on - strand, within RPSI07_RS08645at 178.718 kb on - strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.919 kb on - strand, within RPSI07_RS08645at 178.919 kb on - strand, within RPSI07_RS08645at 179.101 kb on + strand, within RPSI07_RS08645at 179.102 kb on - strand, within RPSI07_RS08645at 179.102 kb on - strand, within RPSI07_RS08645at 179.266 kb on + strand, within RPSI07_RS08645at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strandat 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.765 kb on + strand, within RPSI07_RS08650at 179.765 kb on + strand, within RPSI07_RS08650at 179.766 kb on - strand, within RPSI07_RS08650at 179.766 kb on - strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.850 kb on - strand, within RPSI07_RS08650at 179.850 kb on - strand, within RPSI07_RS08650at 180.023 kb on + strand, within RPSI07_RS08650at 180.023 kb on + strand, within RPSI07_RS08650at 180.023 kb on + strand, within RPSI07_RS08650at 180.024 kb on - strand, within RPSI07_RS08650at 180.024 kb on - strand, within RPSI07_RS08650at 180.044 kb on + strand, within RPSI07_RS08650at 180.044 kb on + strand, within RPSI07_RS08650at 180.044 kb on + strand, within RPSI07_RS08650at 180.062 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.314 kb on + strand, within RPSI07_RS08650at 180.314 kb on + strand, within RPSI07_RS08650at 180.314 kb on + strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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177,642 + RPSI07_RS08640 0.59 -1.2
177,643 - RPSI07_RS08640 0.59 -2.0
178,104 - -0.1
178,104 - -0.9
178,104 - -0.1
178,104 - +1.9
178,104 - -0.8
178,491 - RPSI07_RS24845 0.54 +0.0
178,500 + RPSI07_RS24845 0.58 -1.7
178,657 + +1.8
178,657 + -1.4
178,657 + -0.4
178,657 + -2.4
178,657 + -2.3
178,657 + +0.2
178,658 - +3.1
178,715 + RPSI07_RS08645 0.15 +1.9
178,717 + RPSI07_RS08645 0.15 -0.4
178,717 + RPSI07_RS08645 0.15 +0.1
178,718 - RPSI07_RS08645 0.16 -0.1
178,718 - RPSI07_RS08645 0.16 -0.7
178,840 + RPSI07_RS08645 0.31 -2.3
178,840 + RPSI07_RS08645 0.31 +0.2
178,840 + RPSI07_RS08645 0.31 -0.8
178,840 + RPSI07_RS08645 0.31 +2.4
178,840 + RPSI07_RS08645 0.31 -2.2
178,840 + RPSI07_RS08645 0.31 -2.8
178,840 + RPSI07_RS08645 0.31 +2.9
178,840 + RPSI07_RS08645 0.31 +1.4
178,840 + RPSI07_RS08645 0.31 -0.8
178,840 + RPSI07_RS08645 0.31 -1.5
178,840 + RPSI07_RS08645 0.31 +0.3
178,841 - RPSI07_RS08645 0.31 -1.2
178,841 - RPSI07_RS08645 0.31 -1.7
178,841 - RPSI07_RS08645 0.31 -1.3
178,841 - RPSI07_RS08645 0.31 -1.6
178,841 - RPSI07_RS08645 0.31 +0.1
178,841 - RPSI07_RS08645 0.31 +0.0
178,841 - RPSI07_RS08645 0.31 -2.3
178,841 - RPSI07_RS08645 0.31 -1.3
178,841 - RPSI07_RS08645 0.31 +0.6
178,850 - RPSI07_RS08645 0.32 -0.5
178,850 - RPSI07_RS08645 0.32 -1.1
178,850 - RPSI07_RS08645 0.32 +0.6
178,919 - RPSI07_RS08645 0.41 -0.1
178,919 - RPSI07_RS08645 0.41 -1.2
179,101 + RPSI07_RS08645 0.64 -1.8
179,102 - RPSI07_RS08645 0.65 -1.4
179,102 - RPSI07_RS08645 0.65 -2.5
179,266 + RPSI07_RS08645 0.86 -3.0
179,720 + RPSI07_RS08650 0.17 +1.2
179,720 + RPSI07_RS08650 0.17 +0.1
179,720 + RPSI07_RS08650 0.17 -0.4
179,720 + RPSI07_RS08650 0.17 -0.5
179,720 + RPSI07_RS08650 0.17 +1.8
179,721 - RPSI07_RS08650 0.17 +2.1
179,721 - RPSI07_RS08650 0.17 +0.1
179,721 - RPSI07_RS08650 0.17 +0.3
179,721 - RPSI07_RS08650 0.17 -2.5
179,721 - -0.4
179,721 - RPSI07_RS08650 0.17 -1.5
179,721 - RPSI07_RS08650 0.17 +1.4
179,765 + RPSI07_RS08650 0.20 -3.1
179,765 + RPSI07_RS08650 0.20 -2.3
179,766 - RPSI07_RS08650 0.20 +1.4
179,766 - RPSI07_RS08650 0.20 -0.4
179,792 + RPSI07_RS08650 0.21 -1.4
179,792 + RPSI07_RS08650 0.21 -1.1
179,792 + RPSI07_RS08650 0.21 -1.4
179,792 + RPSI07_RS08650 0.21 -2.8
179,793 - RPSI07_RS08650 0.21 -1.2
179,793 - RPSI07_RS08650 0.21 +3.0
179,793 - RPSI07_RS08650 0.21 -1.7
179,793 - RPSI07_RS08650 0.21 +0.3
179,850 - RPSI07_RS08650 0.25 +0.5
179,850 - RPSI07_RS08650 0.25 +2.9
180,023 + RPSI07_RS08650 0.34 -0.0
180,023 + RPSI07_RS08650 0.34 -2.3
180,023 + RPSI07_RS08650 0.34 -0.4
180,024 - RPSI07_RS08650 0.34 +2.0
180,024 - RPSI07_RS08650 0.34 +3.0
180,044 + RPSI07_RS08650 0.36 -0.7
180,044 + RPSI07_RS08650 0.36 +3.0
180,044 + RPSI07_RS08650 0.36 -3.3
180,062 + RPSI07_RS08650 0.37 +1.1
180,312 + RPSI07_RS08650 0.51 +0.7
180,312 + RPSI07_RS08650 0.51 -2.2
180,312 + RPSI07_RS08650 0.51 +0.1
180,312 + RPSI07_RS08650 0.51 +0.6
180,312 + RPSI07_RS08650 0.51 +1.6
180,312 + RPSI07_RS08650 0.51 +0.7
180,314 + RPSI07_RS08650 0.51 -3.0
180,314 + RPSI07_RS08650 0.51 +1.4
180,314 + RPSI07_RS08650 0.51 -0.6
180,315 - RPSI07_RS08650 0.51 -1.6
180,315 - RPSI07_RS08650 0.51 -1.4
180,315 - RPSI07_RS08650 0.51 -0.8
180,315 - RPSI07_RS08650 0.51 +0.9

Or see this region's nucleotide sequence