Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS08310 and RPSI07_RS08315 overlap by 4 nucleotides RPSI07_RS08315 and RPSI07_RS08320 are separated by 58 nucleotides RPSI07_RS08320 and RPSI07_RS08325 are separated by 68 nucleotides
RPSI07_RS08310: RPSI07_RS08310 - copper-translocating P-type ATPase, at 102,019 to 104,265
_RS08310
RPSI07_RS08315: RPSI07_RS08315 - Cu(I)-responsive transcriptional regulator, at 104,262 to 104,738
_RS08315
RPSI07_RS08320: RPSI07_RS08320 - alpha/beta hydrolase, at 104,797 to 105,657
_RS08320
RPSI07_RS08325: RPSI07_RS08325 - choline dehydrogenase, at 105,726 to 107,360
_RS08325
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 104.101 kb on + strand at 104.101 kb on + strand at 104.102 kb on - strand at 104.355 kb on + strand, within RPSI07_RS08315 at 104.359 kb on - strand, within RPSI07_RS08315 at 104.407 kb on - strand, within RPSI07_RS08315 at 104.407 kb on - strand, within RPSI07_RS08315 at 104.415 kb on + strand, within RPSI07_RS08315 at 104.415 kb on + strand, within RPSI07_RS08315 at 104.415 kb on + strand, within RPSI07_RS08315 at 104.415 kb on + strand, within RPSI07_RS08315 at 104.416 kb on - strand, within RPSI07_RS08315 at 104.609 kb on + strand, within RPSI07_RS08315 at 104.761 kb on + strand at 104.762 kb on - strand at 105.070 kb on + strand, within RPSI07_RS08320 at 105.070 kb on + strand, within RPSI07_RS08320 at 105.070 kb on + strand, within RPSI07_RS08320 at 105.070 kb on + strand, within RPSI07_RS08320 at 105.071 kb on - strand, within RPSI07_RS08320 at 105.071 kb on - strand, within RPSI07_RS08320 at 105.071 kb on - strand, within RPSI07_RS08320 at 105.071 kb on - strand, within RPSI07_RS08320 at 105.473 kb on + strand, within RPSI07_RS08320 at 105.474 kb on - strand, within RPSI07_RS08320 at 105.474 kb on - strand, within RPSI07_RS08320 at 105.574 kb on + strand at 105.575 kb on - strand at 105.575 kb on - strand at 105.735 kb on + strand at 105.735 kb on + strand at 105.736 kb on - strand at 105.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 104,101 + +1.9 104,101 + -2.4 104,102 - +0.1 104,355 + RPSI07_RS08315 0.19 -0.8 104,359 - RPSI07_RS08315 0.20 -0.9 104,407 - RPSI07_RS08315 0.30 +2.9 104,407 - RPSI07_RS08315 0.30 -0.7 104,415 + RPSI07_RS08315 0.32 +1.4 104,415 + RPSI07_RS08315 0.32 -0.9 104,415 + RPSI07_RS08315 0.32 +0.3 104,415 + RPSI07_RS08315 0.32 +0.9 104,416 - RPSI07_RS08315 0.32 +0.2 104,609 + RPSI07_RS08315 0.73 +0.8 104,761 + -0.6 104,762 - -0.9 105,070 + RPSI07_RS08320 0.32 -2.5 105,070 + RPSI07_RS08320 0.32 -2.8 105,070 + RPSI07_RS08320 0.32 -0.4 105,070 + RPSI07_RS08320 0.32 -1.2 105,071 - RPSI07_RS08320 0.32 -1.0 105,071 - RPSI07_RS08320 0.32 -2.4 105,071 - RPSI07_RS08320 0.32 +2.9 105,071 - RPSI07_RS08320 0.32 -1.6 105,473 + RPSI07_RS08320 0.79 -1.1 105,474 - RPSI07_RS08320 0.79 -0.6 105,474 - RPSI07_RS08320 0.79 +0.5 105,574 + -0.4 105,575 - -0.8 105,575 - -2.2 105,735 + -1.7 105,735 + -0.9 105,736 - -0.4 105,736 - -0.4
Or see this region's nucleotide sequence