Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05235

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
1,431,039	+				-1.5
1,431,039	+				-0.3
1,431,070	+				-2.5
1,431,156	+				+0.9
1,431,156	+				-1.5
1,431,157	-				+2.7
1,431,157	-				-3.1
1,431,157	-				+1.5
1,431,198	+				-0.0
1,431,198	+				+3.4
1,431,199	-				+1.7
1,431,199	-				-0.3
1,431,199	-				+3.5
1,431,299	+				-3.6
1,431,299	+				+0.6
1,431,300	-				-1.3
1,431,320	+				-0.6
1,431,362	+				+0.3
1,431,362	+				+0.1
1,431,362	+				+2.8
1,431,362	+				+0.4
1,431,363	-				+0.0
1,431,363	-				-0.5
1,431,363	-				-2.1
1,431,410	+				+0.8
1,431,411	-				-0.4
1,431,411	-				+0.1
1,431,428	+				-1.3
1,431,428	+				+1.1
1,431,428	+				-0.4
1,431,429	-				+1.7
1,431,429	-				+2.2
1,431,449	+				-1.2
1,431,450	-				-0.3
1,431,450	-				+0.2
1,431,536	+				-1.6
1,431,536	+				+2.7
1,431,536	+				+1.2
1,431,537	-				+4.3
1,431,537	-				-2.9
1,431,537	-				-1.9
1,431,538	+				-3.2
1,431,538	+				-2.0
1,431,538	+				+1.1
1,431,538	+				-2.1
1,431,538	+				-0.3
1,431,538	+				+0.4
1,431,539	-				+0.5
1,431,539	-				-1.1
1,431,539	-				+0.7
1,431,539	-				+0.1
1,431,547	+				-2.3
1,431,547	+				-0.7
1,431,547	+				-1.1
1,431,547	+				+0.4
1,431,547	+				-0.5
1,431,548	-				-0.3
1,431,548	-				+2.7
1,431,607	+				-0.6
1,431,607	+				+0.0
1,431,607	+				-2.2
1,431,607	+				+0.8
1,431,607	+				+1.0
1,431,608	-				-3.5
1,431,608	-				-0.2
1,431,608	-				+2.7
1,431,608	-				+0.8
1,431,658	+				+1.2
1,431,658	+				-1.7
1,431,658	+				-0.1
1,431,659	-				+1.5
1,431,659	-				-0.3
1,431,659	-				-1.4
1,431,659	-				+0.7
1,431,679	+				+2.7
1,431,679	+				+1.1
1,431,680	-				+0.9
1,431,680	-				+1.7
1,431,680	-				-0.2
1,431,680	-				-1.6
1,431,682	+				+1.0
1,431,697	+				+0.7
1,431,697	+				+1.0
1,431,697	+				+1.4
1,431,697	+				-1.3
1,431,698	-				+1.8
1,431,698	-				+0.4
1,431,698	-				-0.6
1,431,749	+				-0.3
1,431,808	+				-0.3
1,431,808	+				-0.7
1,431,844	+				-1.2
1,431,845	-				+1.1
1,431,886	+				-0.9
1,431,886	+				-1.9
1,431,886	+				-1.0
1,431,886	+				-1.2
1,431,887	-				-0.8
1,431,887	-				-1.4
1,431,922	+		RPSI07_RS05235	0.11	-1.5
1,431,922	+		RPSI07_RS05235	0.11	+0.1
1,431,922	+		RPSI07_RS05235	0.11	-0.7
1,431,922	+		RPSI07_RS05235	0.11	-0.4
1,431,922	+		RPSI07_RS05235	0.11	+0.2
1,431,923	-		RPSI07_RS05235	0.11	+0.7
1,431,923	-		RPSI07_RS05235	0.11	-0.2
1,431,923	-		RPSI07_RS05235	0.11	+2.7
1,431,923	-		RPSI07_RS05235	0.11	+0.6
1,432,001	+		RPSI07_RS05235	0.13	+0.2
1,432,001	+		RPSI07_RS05235	0.13	-2.2
1,432,001	+		RPSI07_RS05235	0.13	+3.7
1,432,001	+		RPSI07_RS05235	0.13	-1.0
1,432,001	+		RPSI07_RS05235	0.13	+1.7
1,432,001	+		RPSI07_RS05235	0.13	-1.7
1,432,001	+		RPSI07_RS05235	0.13	+2.2
1,432,001	+		RPSI07_RS05235	0.13	-0.2
1,432,001	+		RPSI07_RS05235	0.13	+0.5
1,432,001	+		RPSI07_RS05235	0.13	+2.1
1,432,001	+		RPSI07_RS05235	0.13	+0.6
1,432,002	-		RPSI07_RS05235	0.13	+0.8
1,432,002	-		RPSI07_RS05235	0.13	+2.4
1,432,003	+		RPSI07_RS05235	0.13	+0.9
1,432,003	+		RPSI07_RS05235	0.13	+0.7
1,432,003	+		RPSI07_RS05235	0.13	+2.7
1,432,003	+		RPSI07_RS05235	0.13	+0.8
1,432,078	-		RPSI07_RS05235	0.14	+2.4
1,432,148	-		RPSI07_RS05235	0.16	-0.3
1,432,148	-		RPSI07_RS05235	0.16	-0.2
1,432,216	+		RPSI07_RS05235	0.18	-1.3
1,432,217	-		RPSI07_RS05235	0.18	-2.2
1,432,223	-		RPSI07_RS05235	0.18	+1.1
1,432,264	+		RPSI07_RS05235	0.19	+0.9
1,432,265	-		RPSI07_RS05235	0.19	+1.1
1,432,265	-		RPSI07_RS05235	0.19	-1.6
1,432,324	+		RPSI07_RS05235	0.20	-1.8
1,432,324	+		RPSI07_RS05235	0.20	+0.7
1,432,324	+		RPSI07_RS05235	0.20	+0.2
1,432,324	+		RPSI07_RS05235	0.20	-0.1
1,432,324	+		RPSI07_RS05235	0.20	-1.3
1,432,324	+		RPSI07_RS05235	0.20	-0.1
1,432,324	+		RPSI07_RS05235	0.20	-1.2
1,432,325	-		RPSI07_RS05235	0.20	-0.5
1,432,325	-		RPSI07_RS05235	0.20	-0.1
1,432,325	-		RPSI07_RS05235	0.20	-0.6
1,432,325	-		RPSI07_RS05235	0.20	+0.2
1,432,330	+		RPSI07_RS05235	0.21	-0.6
1,432,330	+		RPSI07_RS05235	0.21	-0.3
1,432,330	+		RPSI07_RS05235	0.21	+0.5
1,432,393	+		RPSI07_RS05235	0.22	+1.2
1,432,393	+		RPSI07_RS05235	0.22	-2.1
1,432,393	+		RPSI07_RS05235	0.22	-2.1
1,432,394	-		RPSI07_RS05235	0.22	-1.6
1,432,394	-		RPSI07_RS05235	0.22	-0.3
1,432,447	+		RPSI07_RS05235	0.23	-0.5
1,432,454	-		RPSI07_RS05235	0.24	-0.2
1,432,454	-		RPSI07_RS05235	0.24	+3.3
1,432,561	+		RPSI07_RS05235	0.26	+1.5
1,432,561	+		RPSI07_RS05235	0.26	+2.7
1,432,669	+		RPSI07_RS05235	0.29	-0.1
1,432,669	+		RPSI07_RS05235	0.29	-1.3
1,432,669	+		RPSI07_RS05235	0.29	-0.2
1,432,670	-		RPSI07_RS05235	0.29	+2.7
1,432,729	+		RPSI07_RS05235	0.30	-0.4
1,432,729	+		RPSI07_RS05235	0.30	-1.6
1,432,729	+		RPSI07_RS05235	0.30	+3.0
1,432,730	-		RPSI07_RS05235	0.30	+1.2
1,432,789	+		RPSI07_RS05235	0.32	-2.2
1,432,789	+		RPSI07_RS05235	0.32	-1.2
1,432,867	+		RPSI07_RS05235	0.34	-0.4
1,432,867	+		RPSI07_RS05235	0.34	-0.7
1,432,867	+		RPSI07_RS05235	0.34	+0.0
1,432,868	-		RPSI07_RS05235	0.34	+1.3
1,432,868	-		RPSI07_RS05235	0.34	-0.6
1,432,868	-		RPSI07_RS05235	0.34	+3.7
1,432,868	-		RPSI07_RS05235	0.34	-1.8
1,432,868	-		RPSI07_RS05235	0.34	-2.0
1,432,868	-		RPSI07_RS05235	0.34	-0.2
1,432,921	+		RPSI07_RS05235	0.35	+2.7
1,432,927	+		RPSI07_RS05235	0.35	-2.3
1,432,990	+		RPSI07_RS05235	0.37	-0.2
1,432,990	+		RPSI07_RS05235	0.37	-0.8
1,432,991	-		RPSI07_RS05235	0.37	-1.3
1,432,991	-		RPSI07_RS05235	0.37	+0.2
1,432,991	-		RPSI07_RS05235	0.37	-0.3
1,432,991	-		RPSI07_RS05235	0.37	-0.8
1,433,054	-		RPSI07_RS05235	0.38	-3.4
1,433,110	+		RPSI07_RS05235	0.39	+0.3
1,433,110	+		RPSI07_RS05235	0.39	-2.6
1,433,236	+		RPSI07_RS05235	0.43	+0.9
1,433,237	-		RPSI07_RS05235	0.43	+1.7
1,433,321	-		RPSI07_RS05235	0.45	+1.1
1,433,321	-		RPSI07_RS05235	0.45	-0.4
1,433,564	-		RPSI07_RS05235	0.51	+0.2
1,433,626	+		RPSI07_RS05235	0.52	-1.2
1,433,627	-		RPSI07_RS05235	0.52	+2.7
1,433,627	-		RPSI07_RS05235	0.52	-0.6
1,433,887	+		RPSI07_RS05235	0.58	-1.0
1,433,887	+		RPSI07_RS05235	0.58	+0.5
1,433,887	+		RPSI07_RS05235	0.58	-1.0
1,433,995	+		RPSI07_RS05235	0.61	-1.7
1,433,995	+		RPSI07_RS05235	0.61	-0.8
1,433,995	+		RPSI07_RS05235	0.61	-0.6
1,433,996	-		RPSI07_RS05235	0.61	-1.7
1,433,996	-		RPSI07_RS05235	0.61	-0.9
1,433,996	-		RPSI07_RS05235	0.61	+0.7
1,433,996	-		RPSI07_RS05235	0.61	-2.3
1,433,996	-		RPSI07_RS05235	0.61	+0.7
1,433,996	-		RPSI07_RS05235	0.61	+5.4
1,433,996	-		RPSI07_RS05235	0.61	+2.3
1,434,002	-		RPSI07_RS05235	0.61	+0.1
1,434,055	+		RPSI07_RS05235	0.62	+2.1
1,434,136	+		RPSI07_RS05235	0.64	-0.4
1,434,136	+		RPSI07_RS05235	0.64	+3.2
1,434,164	+		RPSI07_RS05235	0.65	+1.4
1,434,164	+		RPSI07_RS05235	0.65	-1.2
1,434,164	+		RPSI07_RS05235	0.65	-1.5
1,434,165	-		RPSI07_RS05235	0.65	+1.0
1,434,165	-		RPSI07_RS05235	0.65	+0.7
1,434,165	-		RPSI07_RS05235	0.65	-0.5
1,434,199	+		RPSI07_RS05235	0.66	+1.1
1,434,199	+		RPSI07_RS05235	0.66	-2.1
1,434,200	-		RPSI07_RS05235	0.66	-3.0
1,434,226	+		RPSI07_RS05235	0.67	-1.9
1,434,226	+		RPSI07_RS05235	0.67	+1.2
1,434,226	+		RPSI07_RS05235	0.67	+0.8
1,434,227	-		RPSI07_RS05235	0.67	+0.4
1,434,227	-		RPSI07_RS05235	0.67	-0.6
1,434,779	-		RPSI07_RS05235	0.80	+2.7
1,435,427	-				-0.9
1,435,462	+				-3.6
1,435,462	+				-0.3
1,435,462	+				-2.0
1,435,463	-				+2.4
1,435,463	-				-1.2
1,435,781	+		RPSI07_RS05240	0.39	-1.4
1,435,781	+		RPSI07_RS05240	0.39	-2.2
1,435,782	-		RPSI07_RS05240	0.39	-0.8
1,435,782	-		RPSI07_RS05240	0.39	-0.5
1,435,810	+		RPSI07_RS05240	0.46	-0.2
1,435,841	+		RPSI07_RS05240	0.53	+1.7
1,435,886	+		RPSI07_RS05240	0.64	-1.3
1,435,887	-		RPSI07_RS05240	0.64	-1.6
1,436,033	+				+0.6
1,436,033	+				+0.9
1,436,033	+				+0.5
1,436,033	+				+1.0
1,436,033	+				-0.7
1,436,033	+				+0.4
1,436,034	-				-1.6
1,436,034	-				+0.2
1,436,034	-				-0.3
1,436,034	-				-2.3
1,436,034	-				+2.8
1,436,034	-				+0.1
1,436,186	+				-0.5
1,436,186	+				-2.0
1,436,186	+				-2.2
1,436,186	+				-0.5
1,436,187	-				+1.5
1,436,189	-				-1.0
1,436,198	+				-1.4
1,436,199	-				+2.7
1,436,329	+		RPSI07_RS05245	0.11	-2.0
1,436,329	+		RPSI07_RS05245	0.11	-1.2
1,436,329	+		RPSI07_RS05245	0.11	+0.4
1,436,329	+		RPSI07_RS05245	0.11	-0.5
1,436,330	-		RPSI07_RS05245	0.11	+0.8
1,436,330	-		RPSI07_RS05245	0.11	-2.4
1,436,330	-		RPSI07_RS05245	0.11	-1.5
1,436,587	+		RPSI07_RS05245	0.22	+1.0
1,436,587	+		RPSI07_RS05245	0.22	+1.3