Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04215

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04210 and RPSI07_RS04215 are separated by 38 nucleotidesRPSI07_RS04215 and RPSI07_RS04220 are separated by 119 nucleotidesRPSI07_RS04220 and RPSI07_RS04225 are separated by 9 nucleotidesRPSI07_RS04225 and RPSI07_RS04230 are separated by 11 nucleotides RPSI07_RS04210: RPSI07_RS04210 - carbon monoxide dehydrogenase accessory protein (coxi), at 1,132,551 to 1,133,558 _RS04210 RPSI07_RS04215: RPSI07_RS04215 - cytochrome c, at 1,133,597 to 1,133,914 _RS04215 RPSI07_RS04220: RPSI07_RS04220 - hypothetical protein, at 1,134,034 to 1,134,387 _RS04220 RPSI07_RS04225: RPSI07_RS04225 - hypothetical protein, at 1,134,397 to 1,134,696 _RS04225 RPSI07_RS04230: RPSI07_RS04230 - flavodoxin family protein, at 1,134,708 to 1,135,262 _RS04230 Position (kb) 1133 1134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1132.748 kb on + strand, within RPSI07_RS04210at 1132.795 kb on - strand, within RPSI07_RS04210at 1133.077 kb on - strand, within RPSI07_RS04210at 1133.077 kb on - strand, within RPSI07_RS04210at 1133.107 kb on - strand, within RPSI07_RS04210at 1133.118 kb on + strand, within RPSI07_RS04210at 1133.139 kb on + strand, within RPSI07_RS04210at 1133.140 kb on - strand, within RPSI07_RS04210at 1133.140 kb on - strand, within RPSI07_RS04210at 1133.304 kb on + strand, within RPSI07_RS04210at 1133.304 kb on + strand, within RPSI07_RS04210at 1133.304 kb on + strand, within RPSI07_RS04210at 1133.304 kb on + strand, within RPSI07_RS04210at 1133.304 kb on + strand, within RPSI07_RS04210at 1133.305 kb on - strand, within RPSI07_RS04210at 1133.305 kb on - strand, within RPSI07_RS04210at 1133.305 kb on - strand, within RPSI07_RS04210at 1133.365 kb on - strand, within RPSI07_RS04210at 1133.521 kb on + strandat 1133.521 kb on + strandat 1133.600 kb on + strandat 1133.600 kb on + strandat 1133.600 kb on + strandat 1133.600 kb on + strandat 1133.600 kb on + strandat 1133.600 kb on + strandat 1133.601 kb on - strandat 1133.601 kb on - strandat 1133.601 kb on - strandat 1133.681 kb on + strand, within RPSI07_RS04215at 1133.681 kb on + strand, within RPSI07_RS04215at 1133.682 kb on - strand, within RPSI07_RS04215at 1133.682 kb on - strand, within RPSI07_RS04215at 1133.753 kb on + strand, within RPSI07_RS04215at 1133.753 kb on + strand, within RPSI07_RS04215at 1133.754 kb on - strand, within RPSI07_RS04215at 1133.754 kb on - strand, within RPSI07_RS04215at 1133.754 kb on - strand, within RPSI07_RS04215at 1133.754 kb on - strand, within RPSI07_RS04215at 1133.754 kb on - strand, within RPSI07_RS04215at 1133.816 kb on - strand, within RPSI07_RS04215at 1133.945 kb on + strandat 1133.946 kb on - strandat 1133.946 kb on - strandat 1134.145 kb on + strand, within RPSI07_RS04220at 1134.145 kb on + strand, within RPSI07_RS04220at 1134.146 kb on - strand, within RPSI07_RS04220at 1134.146 kb on - strand, within RPSI07_RS04220at 1134.146 kb on - strand, within RPSI07_RS04220at 1134.169 kb on + strand, within RPSI07_RS04220at 1134.233 kb on + strand, within RPSI07_RS04220at 1134.233 kb on + strand, within RPSI07_RS04220at 1134.233 kb on + strand, within RPSI07_RS04220at 1134.233 kb on + strand, within RPSI07_RS04220at 1134.234 kb on - strand, within RPSI07_RS04220at 1134.234 kb on - strand, within RPSI07_RS04220at 1134.234 kb on - strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.238 kb on + strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.239 kb on - strand, within RPSI07_RS04220at 1134.241 kb on + strand, within RPSI07_RS04220at 1134.242 kb on - strand, within RPSI07_RS04220at 1134.271 kb on + strand, within RPSI07_RS04220at 1134.271 kb on + strand, within RPSI07_RS04220at 1134.271 kb on + strand, within RPSI07_RS04220at 1134.271 kb on + strand, within RPSI07_RS04220at 1134.271 kb on + strand, within RPSI07_RS04220at 1134.271 kb on + strand, within RPSI07_RS04220at 1134.272 kb on - strand, within RPSI07_RS04220at 1134.272 kb on - strand, within RPSI07_RS04220at 1134.376 kb on - strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.385 kb on + strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.386 kb on - strandat 1134.502 kb on + strand, within RPSI07_RS04225at 1134.503 kb on - strand, within RPSI07_RS04225at 1134.503 kb on - strand, within RPSI07_RS04225at 1134.503 kb on - strand, within RPSI07_RS04225at 1134.503 kb on - strand, within RPSI07_RS04225at 1134.644 kb on + strand, within RPSI07_RS04225at 1134.644 kb on + strand, within RPSI07_RS04225at 1134.644 kb on + strand, within RPSI07_RS04225at 1134.644 kb on + strand, within RPSI07_RS04225at 1134.644 kb on + strand, within RPSI07_RS04225at 1134.645 kb on - strandat 1134.645 kb on - strand, within RPSI07_RS04225

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,132,748 + RPSI07_RS04210 0.20 -0.5
1,132,795 - RPSI07_RS04210 0.24 +0.5
1,133,077 - RPSI07_RS04210 0.52 +2.5
1,133,077 - RPSI07_RS04210 0.52 -0.3
1,133,107 - RPSI07_RS04210 0.55 +1.5
1,133,118 + RPSI07_RS04210 0.56 -0.9
1,133,139 + RPSI07_RS04210 0.58 +1.1
1,133,140 - RPSI07_RS04210 0.58 +0.9
1,133,140 - RPSI07_RS04210 0.58 -1.1
1,133,304 + RPSI07_RS04210 0.75 -0.2
1,133,304 + RPSI07_RS04210 0.75 +0.7
1,133,304 + RPSI07_RS04210 0.75 +0.5
1,133,304 + RPSI07_RS04210 0.75 +2.4
1,133,304 + RPSI07_RS04210 0.75 -0.2
1,133,305 - RPSI07_RS04210 0.75 +2.5
1,133,305 - RPSI07_RS04210 0.75 +3.7
1,133,305 - RPSI07_RS04210 0.75 -2.0
1,133,365 - RPSI07_RS04210 0.81 -2.0
1,133,521 + -0.3
1,133,521 + -0.4
1,133,600 + +0.3
1,133,600 + -0.2
1,133,600 + -1.7
1,133,600 + -0.3
1,133,600 + -0.4
1,133,600 + -2.0
1,133,601 - -0.9
1,133,601 - +1.0
1,133,601 - +1.1
1,133,681 + RPSI07_RS04215 0.26 -0.2
1,133,681 + RPSI07_RS04215 0.26 -0.5
1,133,682 - RPSI07_RS04215 0.27 -2.2
1,133,682 - RPSI07_RS04215 0.27 +0.9
1,133,753 + RPSI07_RS04215 0.49 -0.3
1,133,753 + RPSI07_RS04215 0.49 -0.1
1,133,754 - RPSI07_RS04215 0.49 +1.5
1,133,754 - RPSI07_RS04215 0.49 -2.9
1,133,754 - RPSI07_RS04215 0.49 -0.3
1,133,754 - RPSI07_RS04215 0.49 -1.2
1,133,754 - RPSI07_RS04215 0.49 +0.2
1,133,816 - RPSI07_RS04215 0.69 -0.0
1,133,945 + +0.8
1,133,946 - -0.5
1,133,946 - +2.7
1,134,145 + RPSI07_RS04220 0.31 -1.2
1,134,145 + RPSI07_RS04220 0.31 -0.3
1,134,146 - RPSI07_RS04220 0.32 -2.5
1,134,146 - RPSI07_RS04220 0.32 +2.5
1,134,146 - RPSI07_RS04220 0.32 -1.8
1,134,169 + RPSI07_RS04220 0.38 -0.7
1,134,233 + RPSI07_RS04220 0.56 -0.9
1,134,233 + RPSI07_RS04220 0.56 +1.4
1,134,233 + RPSI07_RS04220 0.56 +0.5
1,134,233 + RPSI07_RS04220 0.56 -2.7
1,134,234 - RPSI07_RS04220 0.56 -1.5
1,134,234 - RPSI07_RS04220 0.56 +0.3
1,134,234 - RPSI07_RS04220 0.56 +1.6
1,134,238 + RPSI07_RS04220 0.58 -2.4
1,134,238 + RPSI07_RS04220 0.58 -2.8
1,134,238 + RPSI07_RS04220 0.58 +0.2
1,134,238 + RPSI07_RS04220 0.58 -0.4
1,134,238 + RPSI07_RS04220 0.58 -0.9
1,134,238 + RPSI07_RS04220 0.58 +0.3
1,134,238 + RPSI07_RS04220 0.58 +1.5
1,134,238 + RPSI07_RS04220 0.58 -2.0
1,134,239 - RPSI07_RS04220 0.58 -0.7
1,134,239 - RPSI07_RS04220 0.58 +1.5
1,134,239 - RPSI07_RS04220 0.58 +1.1
1,134,239 - RPSI07_RS04220 0.58 -2.5
1,134,239 - RPSI07_RS04220 0.58 +2.5
1,134,239 - RPSI07_RS04220 0.58 -1.2
1,134,239 - RPSI07_RS04220 0.58 -1.1
1,134,239 - RPSI07_RS04220 0.58 -2.9
1,134,239 - RPSI07_RS04220 0.58 -1.2
1,134,241 + RPSI07_RS04220 0.58 -1.1
1,134,242 - RPSI07_RS04220 0.59 -0.1
1,134,271 + RPSI07_RS04220 0.67 -0.5
1,134,271 + RPSI07_RS04220 0.67 -2.3
1,134,271 + RPSI07_RS04220 0.67 -2.5
1,134,271 + RPSI07_RS04220 0.67 -3.0
1,134,271 + RPSI07_RS04220 0.67 -0.2
1,134,271 + RPSI07_RS04220 0.67 -1.8
1,134,272 - RPSI07_RS04220 0.67 -0.3
1,134,272 - RPSI07_RS04220 0.67 +0.2
1,134,376 - -0.4
1,134,385 + -0.7
1,134,385 + +0.8
1,134,385 + +0.1
1,134,385 + -0.0
1,134,385 + +0.4
1,134,385 + -0.0
1,134,385 + -0.1
1,134,385 + -2.8
1,134,385 + +0.9
1,134,385 + -2.3
1,134,385 + -3.6
1,134,385 + +1.2
1,134,385 + -1.3
1,134,386 - -0.3
1,134,386 - +3.8
1,134,386 - -3.3
1,134,386 - -1.8
1,134,386 - -1.9
1,134,386 - +2.5
1,134,386 - +2.6
1,134,386 - -0.5
1,134,386 - -0.8
1,134,386 - -2.6
1,134,502 + RPSI07_RS04225 0.35 +0.4
1,134,503 - RPSI07_RS04225 0.35 +2.5
1,134,503 - RPSI07_RS04225 0.35 +0.6
1,134,503 - RPSI07_RS04225 0.35 +0.4
1,134,503 - RPSI07_RS04225 0.35 +0.5
1,134,644 + RPSI07_RS04225 0.82 +1.1
1,134,644 + RPSI07_RS04225 0.82 -1.4
1,134,644 + RPSI07_RS04225 0.82 -0.6
1,134,644 + RPSI07_RS04225 0.82 +3.7
1,134,644 + RPSI07_RS04225 0.82 -0.4
1,134,645 - -1.3
1,134,645 - RPSI07_RS04225 0.83 +0.9

Or see this region's nucleotide sequence