Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS01160 and RPSI07_RS01165 are separated by 289 nucleotides RPSI07_RS01165 and RPSI07_RS01170 are separated by 150 nucleotides RPSI07_RS01170 and RPSI07_RS01175 are separated by 121 nucleotides
RPSI07_RS01160: RPSI07_RS01160 - tetratricopeptide repeat protein, at 319,599 to 321,626
_RS01160
RPSI07_RS01165: RPSI07_RS01165 - hypothetical protein, at 321,916 to 322,320
_RS01165
RPSI07_RS01170: RPSI07_RS01170 - hypothetical protein, at 322,471 to 323,649
_RS01170
RPSI07_RS01175: RPSI07_RS01175 - APC family permease, at 323,771 to 325,402
_RS01175
Position (kb) 322
323
324 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 321.719 kb on + strand at 321.720 kb on - strand at 321.720 kb on - strand at 321.803 kb on + strand at 321.804 kb on - strand at 321.804 kb on - strand at 321.804 kb on - strand at 321.831 kb on + strand at 321.832 kb on - strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.841 kb on + strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 321.842 kb on - strand at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.138 kb on + strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.139 kb on - strand, within RPSI07_RS01165 at 322.154 kb on + strand, within RPSI07_RS01165 at 322.154 kb on + strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.155 kb on - strand, within RPSI07_RS01165 at 322.234 kb on + strand, within RPSI07_RS01165 at 322.234 kb on + strand, within RPSI07_RS01165 at 322.242 kb on + strand, within RPSI07_RS01165 at 322.318 kb on + strand at 322.331 kb on + strand at 322.331 kb on + strand at 322.331 kb on + strand at 322.416 kb on + strand at 322.416 kb on + strand at 322.423 kb on + strand at 322.423 kb on + strand at 322.423 kb on + strand at 322.423 kb on + strand at 322.424 kb on - strand at 322.424 kb on - strand at 322.424 kb on - strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.467 kb on + strand at 322.468 kb on - strand at 322.468 kb on - strand at 322.468 kb on - strand at 322.468 kb on - strand at 322.627 kb on - strand, within RPSI07_RS01170 at 322.627 kb on - strand, within RPSI07_RS01170 at 322.696 kb on + strand, within RPSI07_RS01170 at 322.696 kb on + strand, within RPSI07_RS01170 at 322.697 kb on - strand, within RPSI07_RS01170 at 322.697 kb on - strand, within RPSI07_RS01170 at 322.714 kb on + strand, within RPSI07_RS01170 at 322.714 kb on + strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.715 kb on - strand, within RPSI07_RS01170 at 322.897 kb on + strand, within RPSI07_RS01170 at 322.952 kb on + strand, within RPSI07_RS01170 at 322.953 kb on - strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.996 kb on + strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 322.997 kb on - strand, within RPSI07_RS01170 at 323.011 kb on + strand, within RPSI07_RS01170 at 323.011 kb on + strand, within RPSI07_RS01170 at 323.012 kb on - strand, within RPSI07_RS01170 at 323.012 kb on - strand, within RPSI07_RS01170 at 323.068 kb on + strand, within RPSI07_RS01170 at 323.068 kb on + strand, within RPSI07_RS01170 at 323.068 kb on + strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.069 kb on - strand, within RPSI07_RS01170 at 323.257 kb on + strand, within RPSI07_RS01170 at 323.257 kb on + strand, within RPSI07_RS01170 at 323.257 kb on + strand, within RPSI07_RS01170 at 323.258 kb on - strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170 at 323.320 kb on + strand, within RPSI07_RS01170 at 323.321 kb on - strand, within RPSI07_RS01170 at 323.321 kb on - strand, within RPSI07_RS01170 at 323.321 kb on - strand, within RPSI07_RS01170 at 323.321 kb on - strand, within RPSI07_RS01170 at 323.725 kb on + strand at 323.832 kb on + strand at 323.832 kb on + strand at 323.832 kb on + strand at 323.832 kb on + strand at 323.833 kb on - strand at 323.833 kb on - strand at 323.833 kb on - strand at 323.833 kb on - strand at 323.833 kb on - strand at 323.856 kb on + strand at 323.856 kb on + strand at 323.889 kb on + strand at 323.892 kb on + strand at 323.892 kb on + strand at 323.892 kb on + strand at 323.893 kb on - strand at 323.893 kb on - strand at 323.979 kb on + strand, within RPSI07_RS01175 at 324.072 kb on + strand, within RPSI07_RS01175 at 324.073 kb on - strand, within RPSI07_RS01175 at 324.075 kb on + strand, within RPSI07_RS01175 at 324.075 kb on + strand, within RPSI07_RS01175 at 324.075 kb on + strand, within RPSI07_RS01175 at 324.075 kb on + strand, within RPSI07_RS01175 at 324.075 kb on + strand, within RPSI07_RS01175 at 324.075 kb on + strand, within RPSI07_RS01175 at 324.075 kb on + strand, within RPSI07_RS01175 at 324.076 kb on - strand, within RPSI07_RS01175 at 324.076 kb on - strand, within RPSI07_RS01175 at 324.076 kb on - strand, within RPSI07_RS01175 at 324.076 kb on - strand, within RPSI07_RS01175 at 324.082 kb on - strand, within RPSI07_RS01175 at 324.082 kb on - strand, within RPSI07_RS01175 at 324.082 kb on - strand, within RPSI07_RS01175 at 324.082 kb on - strand, within RPSI07_RS01175 at 324.144 kb on + strand, within RPSI07_RS01175 at 324.145 kb on - strand, within RPSI07_RS01175 at 324.145 kb on - strand, within RPSI07_RS01175 at 324.145 kb on - strand, within RPSI07_RS01175 at 324.145 kb on - strand, within RPSI07_RS01175 at 324.145 kb on - strand, within RPSI07_RS01175 at 324.145 kb on - strand, within RPSI07_RS01175 at 324.444 kb on + strand, within RPSI07_RS01175 at 324.444 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.471 kb on + strand, within RPSI07_RS01175 at 324.472 kb on - strand, within RPSI07_RS01175 at 324.472 kb on - strand, within RPSI07_RS01175 at 324.472 kb on - strand, within RPSI07_RS01175 at 324.472 kb on - strand, within RPSI07_RS01175 at 324.472 kb on - strand, within RPSI07_RS01175 at 324.472 kb on - strand, within RPSI07_RS01175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 321,719 + +0.0 321,720 - -0.6 321,720 - +0.4 321,803 + +0.4 321,804 - -1.8 321,804 - -0.4 321,804 - +2.2 321,831 + -1.9 321,832 - -2.0 321,841 + -1.4 321,841 + +0.6 321,841 + -0.7 321,841 + -0.5 321,841 + -0.6 321,841 + -1.2 321,841 + -0.7 321,841 + -1.0 321,842 - -2.9 321,842 - -0.6 321,842 - -1.4 321,842 - -1.3 321,842 - +1.7 321,842 - -0.8 321,842 - +2.7 321,842 - +2.5 321,842 - +0.6 321,842 - -0.5 322,138 + RPSI07_RS01165 0.55 -1.1 322,138 + RPSI07_RS01165 0.55 +0.7 322,138 + RPSI07_RS01165 0.55 -2.1 322,138 + RPSI07_RS01165 0.55 -0.2 322,138 + RPSI07_RS01165 0.55 +0.4 322,138 + RPSI07_RS01165 0.55 +0.7 322,139 - RPSI07_RS01165 0.55 +1.1 322,139 - RPSI07_RS01165 0.55 +0.9 322,139 - RPSI07_RS01165 0.55 -0.9 322,139 - RPSI07_RS01165 0.55 +0.1 322,139 - RPSI07_RS01165 0.55 -1.3 322,139 - RPSI07_RS01165 0.55 -0.1 322,139 - RPSI07_RS01165 0.55 +0.2 322,154 + RPSI07_RS01165 0.59 -3.0 322,154 + RPSI07_RS01165 0.59 -2.7 322,155 - RPSI07_RS01165 0.59 -1.7 322,155 - RPSI07_RS01165 0.59 -1.4 322,155 - RPSI07_RS01165 0.59 -0.1 322,155 - RPSI07_RS01165 0.59 -0.5 322,155 - RPSI07_RS01165 0.59 -0.0 322,155 - RPSI07_RS01165 0.59 +1.5 322,155 - RPSI07_RS01165 0.59 +0.0 322,234 + RPSI07_RS01165 0.79 -0.5 322,234 + RPSI07_RS01165 0.79 +1.3 322,242 + RPSI07_RS01165 0.80 -1.2 322,318 + -1.0 322,331 + -1.5 322,331 + -0.9 322,331 + +2.7 322,416 + +0.4 322,416 + -2.0 322,423 + +0.4 322,423 + -3.0 322,423 + -2.0 322,423 + -2.0 322,424 - +1.7 322,424 - -0.2 322,424 - -2.4 322,467 + +0.7 322,467 + -0.1 322,467 + -1.2 322,467 + +0.8 322,467 + +0.6 322,467 + +1.3 322,468 - -2.6 322,468 - +2.7 322,468 - -0.2 322,468 - -1.1 322,627 - RPSI07_RS01170 0.13 +1.1 322,627 - RPSI07_RS01170 0.13 -0.7 322,696 + RPSI07_RS01170 0.19 -3.1 322,696 + RPSI07_RS01170 0.19 +0.3 322,697 - RPSI07_RS01170 0.19 +0.8 322,697 - RPSI07_RS01170 0.19 -2.6 322,714 + RPSI07_RS01170 0.21 +0.1 322,714 + RPSI07_RS01170 0.21 -1.5 322,715 - RPSI07_RS01170 0.21 -2.5 322,715 - RPSI07_RS01170 0.21 +0.6 322,715 - RPSI07_RS01170 0.21 -2.4 322,715 - RPSI07_RS01170 0.21 +0.7 322,715 - RPSI07_RS01170 0.21 -0.9 322,715 - RPSI07_RS01170 0.21 +0.2 322,897 + RPSI07_RS01170 0.36 +1.7 322,952 + RPSI07_RS01170 0.41 -0.4 322,953 - RPSI07_RS01170 0.41 -1.2 322,996 + RPSI07_RS01170 0.45 +0.0 322,996 + RPSI07_RS01170 0.45 +1.1 322,996 + RPSI07_RS01170 0.45 +1.7 322,996 + RPSI07_RS01170 0.45 -1.0 322,997 - RPSI07_RS01170 0.45 +2.7 322,997 - RPSI07_RS01170 0.45 +0.9 322,997 - RPSI07_RS01170 0.45 +3.5 322,997 - RPSI07_RS01170 0.45 +1.1 323,011 + RPSI07_RS01170 0.46 -2.4 323,011 + RPSI07_RS01170 0.46 -0.9 323,012 - RPSI07_RS01170 0.46 -0.5 323,012 - RPSI07_RS01170 0.46 -2.1 323,068 + RPSI07_RS01170 0.51 -0.3 323,068 + RPSI07_RS01170 0.51 -0.8 323,068 + RPSI07_RS01170 0.51 -0.8 323,069 - RPSI07_RS01170 0.51 -1.0 323,069 - RPSI07_RS01170 0.51 -2.2 323,069 - RPSI07_RS01170 0.51 +0.7 323,069 - RPSI07_RS01170 0.51 -0.0 323,257 + RPSI07_RS01170 0.67 -0.5 323,257 + RPSI07_RS01170 0.67 -1.1 323,257 + RPSI07_RS01170 0.67 -0.3 323,258 - RPSI07_RS01170 0.67 -1.1 323,320 + RPSI07_RS01170 0.72 +1.8 323,320 + RPSI07_RS01170 0.72 -0.3 323,320 + RPSI07_RS01170 0.72 -1.2 323,320 + RPSI07_RS01170 0.72 +0.5 323,321 - RPSI07_RS01170 0.72 -0.4 323,321 - RPSI07_RS01170 0.72 +2.7 323,321 - RPSI07_RS01170 0.72 +2.9 323,321 - RPSI07_RS01170 0.72 +0.6 323,725 + +0.7 323,832 + -0.4 323,832 + +0.7 323,832 + +1.0 323,832 + -2.4 323,833 - -0.7 323,833 - +0.6 323,833 - -0.3 323,833 - +0.7 323,833 - -0.9 323,856 + +0.1 323,856 + +2.7 323,889 + +0.5 323,892 + +1.1 323,892 + -1.0 323,892 + -2.3 323,893 - -4.2 323,893 - -1.8 323,979 + RPSI07_RS01175 0.13 -0.7 324,072 + RPSI07_RS01175 0.18 -2.4 324,073 - RPSI07_RS01175 0.19 -2.3 324,075 + RPSI07_RS01175 0.19 -2.1 324,075 + RPSI07_RS01175 0.19 -2.5 324,075 + RPSI07_RS01175 0.19 -3.0 324,075 + RPSI07_RS01175 0.19 -2.0 324,075 + RPSI07_RS01175 0.19 -0.9 324,075 + RPSI07_RS01175 0.19 +1.1 324,075 + RPSI07_RS01175 0.19 +0.6 324,076 - RPSI07_RS01175 0.19 -0.5 324,076 - RPSI07_RS01175 0.19 +0.8 324,076 - RPSI07_RS01175 0.19 -0.7 324,076 - RPSI07_RS01175 0.19 -2.4 324,082 - RPSI07_RS01175 0.19 -1.2 324,082 - RPSI07_RS01175 0.19 -0.4 324,082 - RPSI07_RS01175 0.19 -0.9 324,082 - RPSI07_RS01175 0.19 -1.7 324,144 + RPSI07_RS01175 0.23 -1.7 324,145 - RPSI07_RS01175 0.23 -2.2 324,145 - RPSI07_RS01175 0.23 -2.0 324,145 - RPSI07_RS01175 0.23 -1.6 324,145 - RPSI07_RS01175 0.23 +0.1 324,145 - RPSI07_RS01175 0.23 -1.7 324,145 - RPSI07_RS01175 0.23 -1.4 324,444 + RPSI07_RS01175 0.41 +0.5 324,444 + RPSI07_RS01175 0.41 -0.8 324,471 + RPSI07_RS01175 0.43 -2.5 324,471 + RPSI07_RS01175 0.43 -1.7 324,471 + RPSI07_RS01175 0.43 +0.1 324,471 + RPSI07_RS01175 0.43 -0.1 324,471 + RPSI07_RS01175 0.43 -1.4 324,471 + RPSI07_RS01175 0.43 -0.3 324,471 + RPSI07_RS01175 0.43 -3.1 324,471 + RPSI07_RS01175 0.43 -0.7 324,472 - RPSI07_RS01175 0.43 -2.7 324,472 - RPSI07_RS01175 0.43 +0.2 324,472 - RPSI07_RS01175 0.43 -2.4 324,472 - RPSI07_RS01175 0.43 +0.5 324,472 - RPSI07_RS01175 0.43 -0.2 324,472 - RPSI07_RS01175 0.43 -0.8
Or see this region's nucleotide sequence