Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS00035

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
6,211	+		RPSI07_RS00030	0.27	-1.6
6,211	+		RPSI07_RS00030	0.27	-1.9
6,212	-		RPSI07_RS00030	0.27	-2.8
6,212	-		RPSI07_RS00030	0.27	-1.2
6,255	+		RPSI07_RS00030	0.32	+0.4
6,255	+		RPSI07_RS00030	0.32	-0.7
6,255	+		RPSI07_RS00030	0.32	-2.5
6,255	+		RPSI07_RS00030	0.32	+1.7
6,255	+		RPSI07_RS00030	0.32	-1.4
6,255	+		RPSI07_RS00030	0.32	+1.5
6,255	+		RPSI07_RS00030	0.32	-0.5
6,255	+		RPSI07_RS00030	0.32	-0.9
6,255	+		RPSI07_RS00030	0.32	-2.0
6,255	+		RPSI07_RS00030	0.32	+2.7
6,255	+		RPSI07_RS00030	0.32	-0.7
6,255	+		RPSI07_RS00030	0.32	-3.4
6,255	+		RPSI07_RS00030	0.32	-2.3
6,256	-		RPSI07_RS00030	0.32	-1.4
6,256	-		RPSI07_RS00030	0.32	+1.7
6,256	-		RPSI07_RS00030	0.32	+0.0
6,256	-		RPSI07_RS00030	0.32	-0.7
6,256	-		RPSI07_RS00030	0.32	-1.9
6,256	-		RPSI07_RS00030	0.32	-1.2
6,256	-		RPSI07_RS00030	0.32	-1.1
6,256	-		RPSI07_RS00030	0.32	-3.2
6,256	-		RPSI07_RS00030	0.32	-1.4
6,256	-		RPSI07_RS00030	0.32	-2.1
6,399	+		RPSI07_RS00030	0.47	+2.3
6,400	-		RPSI07_RS00030	0.47	+1.7
6,400	-		RPSI07_RS00030	0.47	-2.9
6,408	+		RPSI07_RS00030	0.48	+1.2
6,473	-		RPSI07_RS00030	0.54	+0.5
6,573	+		RPSI07_RS00030	0.65	-1.3
6,573	+		RPSI07_RS00030	0.65	+0.9
6,574	-		RPSI07_RS00030	0.65	-2.5
6,574	-		RPSI07_RS00030	0.65	-1.1
6,574	-		RPSI07_RS00030	0.65	-1.0
6,735	+		RPSI07_RS00030	0.81	-3.1
6,735	+		RPSI07_RS00030	0.81	-2.0
6,798	+		RPSI07_RS00030	0.88	-4.5
6,798	+		RPSI07_RS00030	0.88	-0.7
6,798	+		RPSI07_RS00030	0.88	+1.7
6,798	+		RPSI07_RS00030	0.88	+0.2
6,798	+		RPSI07_RS00030	0.88	+1.3
6,798	+		RPSI07_RS00030	0.88	-0.7
6,799	-		RPSI07_RS00030	0.88	-0.5
6,799	-		RPSI07_RS00030	0.88	+1.5
6,799	-		RPSI07_RS00030	0.88	+0.2
6,799	-		RPSI07_RS00030	0.88	+0.5
6,799	-		RPSI07_RS00030	0.88	-0.6
6,799	-		RPSI07_RS00030	0.88	-0.5
6,799	-		RPSI07_RS00030	0.88	-1.5
6,799	-		RPSI07_RS00030	0.88	+2.7
6,799	-		RPSI07_RS00030	0.88	-0.2
6,799	-		RPSI07_RS00030	0.88	+0.7
6,799	-		RPSI07_RS00030	0.88	+0.1
6,799	-		RPSI07_RS00030	0.88	-0.4
6,799	-		RPSI07_RS00030	0.88	-0.0
6,801	-		RPSI07_RS00030	0.88	-2.0
6,804	+		RPSI07_RS00030	0.89	-0.6
6,805	-		RPSI07_RS00030	0.89	-2.8
7,085	-				+0.2
7,085	-				-2.2
7,085	-				-1.7
7,085	-				+0.3
7,329	+		RPSI07_RS00035	0.10	-3.1
7,329	+		RPSI07_RS00035	0.10	-1.7
7,329	+		RPSI07_RS00035	0.10	-1.1
7,329	+		RPSI07_RS00035	0.10	-1.2
7,338	+		RPSI07_RS00035	0.11	-0.1
7,338	+		RPSI07_RS00035	0.11	+0.7
7,338	+		RPSI07_RS00035	0.11	-1.0
7,338	+		RPSI07_RS00035	0.11	-2.2
7,338	+		RPSI07_RS00035	0.11	-2.1
7,339	-		RPSI07_RS00035	0.11	-0.0
7,339	-		RPSI07_RS00035	0.11	-2.5
7,339	-		RPSI07_RS00035	0.11	-2.9
7,344	+		RPSI07_RS00035	0.11	-0.8
7,344	+		RPSI07_RS00035	0.11	+1.7
7,344	+		RPSI07_RS00035	0.11	-2.4
7,344	+		RPSI07_RS00035	0.11	-3.7
7,344	+		RPSI07_RS00035	0.11	-2.0
7,345	-		RPSI07_RS00035	0.11	+1.0
7,362	+		RPSI07_RS00035	0.12	-2.5
7,363	-		RPSI07_RS00035	0.13	+2.7
7,475	+		RPSI07_RS00035	0.21	+2.7
7,475	+		RPSI07_RS00035	0.21	-0.3
7,475	+		RPSI07_RS00035	0.21	-1.0
7,476	-		RPSI07_RS00035	0.21	-3.5
7,476	-		RPSI07_RS00035	0.21	-2.3
7,476	-		RPSI07_RS00035	0.21	-1.2
7,479	+		RPSI07_RS00035	0.21	-2.1
7,479	+		RPSI07_RS00035	0.21	-1.7
7,479	+		RPSI07_RS00035	0.21	-2.0
7,480	-		RPSI07_RS00035	0.21	+2.7
7,569	+		RPSI07_RS00035	0.28	-0.1
7,570	-		RPSI07_RS00035	0.28	-2.3
7,570	-		RPSI07_RS00035	0.28	-0.3
7,570	-		RPSI07_RS00035	0.28	+0.1
7,570	-		RPSI07_RS00035	0.28	+0.2
7,619	-		RPSI07_RS00035	0.32	+0.0
7,648	-		RPSI07_RS00035	0.34	-1.7
7,665	+		RPSI07_RS00035	0.35	+2.4
7,666	-		RPSI07_RS00035	0.35	-1.6
7,666	-		RPSI07_RS00035	0.35	+0.4
7,666	-		RPSI07_RS00035	0.35	-1.5
7,666	-		RPSI07_RS00035	0.35	-3.2
7,704	+		RPSI07_RS00035	0.38	+1.8
7,704	+		RPSI07_RS00035	0.38	-1.3
7,705	-		RPSI07_RS00035	0.38	+1.7
7,705	-		RPSI07_RS00035	0.38	+0.4
7,719	+		RPSI07_RS00035	0.39	-1.8
7,719	+		RPSI07_RS00035	0.39	-1.4
7,719	+		RPSI07_RS00035	0.39	-2.0
7,719	+		RPSI07_RS00035	0.39	+0.1
7,719	+		RPSI07_RS00035	0.39	+2.0
7,720	-		RPSI07_RS00035	0.39	-0.6
8,011	-		RPSI07_RS00035	0.61	+0.8
8,016	+		RPSI07_RS00035	0.61	-0.2
8,016	+		RPSI07_RS00035	0.61	-0.7
8,017	-		RPSI07_RS00035	0.61	-0.1
8,017	-		RPSI07_RS00035	0.61	-0.5
8,025	+		RPSI07_RS00035	0.62	+1.2
8,025	+		RPSI07_RS00035	0.62	-0.7
8,025	+		RPSI07_RS00035	0.62	+0.1
8,025	-		RPSI07_RS00035	0.62	+0.3
8,026	-		RPSI07_RS00035	0.62	+1.6
8,026	-		RPSI07_RS00035	0.62	-0.1
8,026	-		RPSI07_RS00035	0.62	-0.6
8,289	+		RPSI07_RS00035	0.81	-3.1
8,364	+		RPSI07_RS00035	0.87	-0.5
8,364	+		RPSI07_RS00035	0.87	+0.5
8,403	+				-2.8
8,403	+				-0.7
8,403	+				-3.0
8,404	-				-0.3
8,404	-				+0.6
8,448	+				+0.5
8,448	+				+1.2
8,449	-				-1.9
8,449	-				-0.2
8,449	-				-1.2
8,449	-				+2.7
8,454	+				-0.8
8,454	+				+2.1
8,454	+				-3.6
8,490	+				-0.5
8,490	+				+1.0
8,490	+				-1.3
8,491	-				-2.1
8,491	-				-0.6
8,491	-				-0.8
8,491	-				+1.4
8,491	-				+0.0
8,508	-				-0.7
8,632	+				+2.0
8,632	+				-3.4
8,633	-				+2.4
8,633	-				-1.7
8,664	+				-0.1
8,664	+				-0.7
8,665	-				+1.3
8,665	-				-1.4
8,686	-				+2.7
8,686	-				+0.5
8,730	+				+0.3
8,731	-				-0.1
8,731	-				+2.7
8,866	-		RPSI07_RS00040	0.17	-1.5
8,866	-		RPSI07_RS00040	0.17	+0.7
8,907	+		RPSI07_RS00040	0.19	+2.7
8,907	+		RPSI07_RS00040	0.19	-0.5
8,907	+		RPSI07_RS00040	0.19	+1.8
8,982	+		RPSI07_RS00040	0.23	-0.1
8,982	+		RPSI07_RS00040	0.23	-0.7
8,982	+		RPSI07_RS00040	0.23	-1.0
8,982	+		RPSI07_RS00040	0.23	+2.7
8,982	+		RPSI07_RS00040	0.23	-2.0
8,983	-		RPSI07_RS00040	0.23	-0.1
8,983	-		RPSI07_RS00040	0.23	+0.1
8,983	-		RPSI07_RS00040	0.23	+3.1
9,036	+		RPSI07_RS00040	0.25	-1.3
9,036	+		RPSI07_RS00040	0.25	+0.2
9,036	+		RPSI07_RS00040	0.25	-0.6
9,036	+		RPSI07_RS00040	0.25	-0.9
9,036	+		RPSI07_RS00040	0.25	-1.4
9,037	-		RPSI07_RS00040	0.26	-1.8
9,037	-		RPSI07_RS00040	0.26	-0.8
9,037	-		RPSI07_RS00040	0.26	+0.7
9,038	-		RPSI07_RS00040	0.26	-1.1
9,070	-		RPSI07_RS00040	0.27	+0.3
9,070	-		RPSI07_RS00040	0.27	+0.2
9,174	-		RPSI07_RS00040	0.33	-0.8
9,234	+		RPSI07_RS00040	0.36	-3.7
9,234	+		RPSI07_RS00040	0.36	+0.8
9,294	+		RPSI07_RS00040	0.39	+2.8
9,294	+		RPSI07_RS00040	0.39	+0.9
9,294	+		RPSI07_RS00040	0.39	+0.2
9,295	-		RPSI07_RS00040	0.39	-0.9