Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17815

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17805 and RPSI07_RS17810 are separated by 172 nucleotidesRPSI07_RS17810 and RPSI07_RS17815 are separated by 100 nucleotidesRPSI07_RS17815 and RPSI07_RS17820 are separated by 50 nucleotides RPSI07_RS17805: RPSI07_RS17805 - HAD family hydrolase, at 2,199,409 to 2,200,296 _RS17805 RPSI07_RS17810: RPSI07_RS17810 - hypothetical protein, at 2,200,469 to 2,200,795 _RS17810 RPSI07_RS17815: RPSI07_RS17815 - nitrogen regulation protein NR(I), at 2,200,896 to 2,202,407 _RS17815 RPSI07_RS17820: RPSI07_RS17820 - PAS domain-containing sensor histidine kinase, at 2,202,458 to 2,203,657 _RS17820 Position (kb) 2200 2201 2202 2203Strain fitness (log2 ratio) -3 -2 -1 0 1at 2199.928 kb on - strand, within RPSI07_RS17805at 2200.201 kb on + strand, within RPSI07_RS17805at 2200.611 kb on - strand, within RPSI07_RS17810at 2201.167 kb on + strand, within RPSI07_RS17815at 2201.167 kb on + strand, within RPSI07_RS17815at 2202.675 kb on + strand, within RPSI07_RS17820at 2202.675 kb on + strand, within RPSI07_RS17820at 2202.676 kb on - strand, within RPSI07_RS17820at 2203.021 kb on - strand, within RPSI07_RS17820at 2203.371 kb on + strand, within RPSI07_RS17820at 2203.371 kb on + strand, within RPSI07_RS17820at 2203.372 kb on - strand, within RPSI07_RS17820at 2203.372 kb on - strand, within RPSI07_RS17820at 2203.381 kb on + strand, within RPSI07_RS17820at 2203.381 kb on + strand, within RPSI07_RS17820at 2203.381 kb on + strand, within RPSI07_RS17820at 2203.382 kb on - strand, within RPSI07_RS17820at 2203.382 kb on - strand, within RPSI07_RS17820at 2203.382 kb on - strand, within RPSI07_RS17820

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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2,199,928 - RPSI07_RS17805 0.58 -0.2
2,200,201 + RPSI07_RS17805 0.89 +0.3
2,200,611 - RPSI07_RS17810 0.43 -2.2
2,201,167 + RPSI07_RS17815 0.18 +1.7
2,201,167 + RPSI07_RS17815 0.18 -0.3
2,202,675 + RPSI07_RS17820 0.18 -0.6
2,202,675 + RPSI07_RS17820 0.18 -2.9
2,202,676 - RPSI07_RS17820 0.18 -1.2
2,203,021 - RPSI07_RS17820 0.47 +0.7
2,203,371 + RPSI07_RS17820 0.76 -0.1
2,203,371 + RPSI07_RS17820 0.76 -1.9
2,203,372 - RPSI07_RS17820 0.76 -1.0
2,203,372 - RPSI07_RS17820 0.76 -1.2
2,203,381 + RPSI07_RS17820 0.77 -1.1
2,203,381 + RPSI07_RS17820 0.77 -0.5
2,203,381 + RPSI07_RS17820 0.77 -0.7
2,203,382 - RPSI07_RS17820 0.77 +0.4
2,203,382 - RPSI07_RS17820 0.77 +1.7
2,203,382 - RPSI07_RS17820 0.77 -0.8

Or see this region's nucleotide sequence