Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10545 and RPSI07_RS10550 are separated by 72 nucleotides RPSI07_RS10550 and RPSI07_RS10555 are separated by 85 nucleotides RPSI07_RS10555 and RPSI07_RS10560 are separated by 2 nucleotides
RPSI07_RS10545: RPSI07_RS10545 - gamma-glutamyltransferase family protein, at 567,457 to 569,325
_RS10545
RPSI07_RS10550: RPSI07_RS10550 - TonB-dependent siderophore receptor, at 569,398 to 571,803
_RS10550
RPSI07_RS10555: RPSI07_RS10555 - FecR family protein, at 571,889 to 572,713
_RS10555
RPSI07_RS10560: RPSI07_RS10560 - RNA polymerase sigma factor, at 572,716 to 573,273
_RS10560
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 568.588 kb on + strand, within RPSI07_RS10545 at 568.588 kb on + strand, within RPSI07_RS10545 at 568.588 kb on + strand, within RPSI07_RS10545 at 568.588 kb on + strand, within RPSI07_RS10545 at 568.588 kb on + strand, within RPSI07_RS10545 at 568.589 kb on - strand, within RPSI07_RS10545 at 568.645 kb on + strand, within RPSI07_RS10545 at 568.646 kb on - strand, within RPSI07_RS10545 at 569.044 kb on + strand, within RPSI07_RS10545 at 569.045 kb on - strand, within RPSI07_RS10545 at 569.444 kb on + strand at 569.445 kb on + strand at 569.445 kb on - strand at 569.445 kb on - strand at 569.445 kb on - strand at 569.465 kb on + strand at 569.541 kb on - strand at 569.541 kb on - strand at 569.673 kb on - strand, within RPSI07_RS10550 at 569.673 kb on - strand, within RPSI07_RS10550 at 569.673 kb on - strand, within RPSI07_RS10550 at 569.771 kb on + strand, within RPSI07_RS10550 at 569.771 kb on + strand, within RPSI07_RS10550 at 569.771 kb on + strand, within RPSI07_RS10550 at 569.772 kb on - strand, within RPSI07_RS10550 at 569.772 kb on - strand, within RPSI07_RS10550 at 569.777 kb on + strand, within RPSI07_RS10550 at 569.777 kb on + strand, within RPSI07_RS10550 at 569.778 kb on - strand, within RPSI07_RS10550 at 570.066 kb on - strand, within RPSI07_RS10550 at 570.080 kb on + strand, within RPSI07_RS10550 at 570.092 kb on + strand, within RPSI07_RS10550 at 570.092 kb on + strand, within RPSI07_RS10550 at 570.093 kb on - strand, within RPSI07_RS10550 at 570.093 kb on - strand, within RPSI07_RS10550 at 570.242 kb on + strand, within RPSI07_RS10550 at 570.338 kb on + strand, within RPSI07_RS10550 at 570.399 kb on - strand, within RPSI07_RS10550 at 570.482 kb on + strand, within RPSI07_RS10550 at 570.482 kb on + strand, within RPSI07_RS10550 at 570.482 kb on + strand, within RPSI07_RS10550 at 570.483 kb on - strand, within RPSI07_RS10550 at 570.498 kb on + strand, within RPSI07_RS10550 at 570.556 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.557 kb on + strand, within RPSI07_RS10550 at 570.558 kb on - strand, within RPSI07_RS10550 at 570.558 kb on - strand, within RPSI07_RS10550 at 570.558 kb on - strand, within RPSI07_RS10550 at 570.558 kb on - strand, within RPSI07_RS10550 at 570.558 kb on - strand, within RPSI07_RS10550 at 570.558 kb on - strand, within RPSI07_RS10550 at 570.558 kb on - strand, within RPSI07_RS10550 at 570.590 kb on + strand, within RPSI07_RS10550 at 570.590 kb on + strand, within RPSI07_RS10550 at 570.591 kb on - strand, within RPSI07_RS10550 at 570.645 kb on - strand, within RPSI07_RS10550 at 570.645 kb on - strand, within RPSI07_RS10550 at 570.645 kb on - strand, within RPSI07_RS10550 at 570.645 kb on - strand, within RPSI07_RS10550 at 570.791 kb on + strand, within RPSI07_RS10550 at 570.792 kb on - strand, within RPSI07_RS10550 at 570.792 kb on - strand, within RPSI07_RS10550 at 571.076 kb on + strand, within RPSI07_RS10550 at 571.076 kb on + strand, within RPSI07_RS10550 at 571.077 kb on - strand, within RPSI07_RS10550 at 571.077 kb on - strand, within RPSI07_RS10550 at 571.077 kb on - strand, within RPSI07_RS10550 at 571.184 kb on + strand, within RPSI07_RS10550 at 571.185 kb on - strand, within RPSI07_RS10550 at 571.217 kb on + strand, within RPSI07_RS10550 at 571.218 kb on - strand, within RPSI07_RS10550 at 571.218 kb on - strand, within RPSI07_RS10550 at 571.244 kb on + strand, within RPSI07_RS10550 at 571.263 kb on + strand, within RPSI07_RS10550 at 571.264 kb on - strand, within RPSI07_RS10550 at 571.397 kb on + strand, within RPSI07_RS10550 at 571.398 kb on - strand, within RPSI07_RS10550 at 571.398 kb on - strand, within RPSI07_RS10550 at 571.572 kb on - strand at 571.828 kb on + strand at 571.828 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.869 kb on + strand at 571.870 kb on - strand at 571.870 kb on - strand at 572.518 kb on - strand, within RPSI07_RS10555 at 572.518 kb on - strand, within RPSI07_RS10555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 568,588 + RPSI07_RS10545 0.61 -0.1 568,588 + RPSI07_RS10545 0.61 -1.0 568,588 + RPSI07_RS10545 0.61 -0.6 568,588 + RPSI07_RS10545 0.61 +1.5 568,588 + RPSI07_RS10545 0.61 +2.9 568,589 - RPSI07_RS10545 0.61 -1.9 568,645 + RPSI07_RS10545 0.64 -0.1 568,646 - RPSI07_RS10545 0.64 -1.3 569,044 + RPSI07_RS10545 0.85 -0.3 569,045 - RPSI07_RS10545 0.85 -0.4 569,444 + -1.3 569,445 + -1.6 569,445 - +1.3 569,445 - +1.5 569,445 - -1.0 569,465 + -1.6 569,541 - -0.0 569,541 - +4.5 569,673 - RPSI07_RS10550 0.11 +3.1 569,673 - RPSI07_RS10550 0.11 +3.1 569,673 - RPSI07_RS10550 0.11 -0.3 569,771 + RPSI07_RS10550 0.16 -1.6 569,771 + RPSI07_RS10550 0.16 -1.2 569,771 + RPSI07_RS10550 0.16 -0.7 569,772 - RPSI07_RS10550 0.16 -1.0 569,772 - RPSI07_RS10550 0.16 -0.1 569,777 + RPSI07_RS10550 0.16 -1.0 569,777 + RPSI07_RS10550 0.16 -0.5 569,778 - RPSI07_RS10550 0.16 +1.5 570,066 - RPSI07_RS10550 0.28 -1.6 570,080 + RPSI07_RS10550 0.28 +2.7 570,092 + RPSI07_RS10550 0.29 +0.1 570,092 + RPSI07_RS10550 0.29 -0.7 570,093 - RPSI07_RS10550 0.29 -0.8 570,093 - RPSI07_RS10550 0.29 -0.5 570,242 + RPSI07_RS10550 0.35 +2.1 570,338 + RPSI07_RS10550 0.39 -1.1 570,399 - RPSI07_RS10550 0.42 +1.5 570,482 + RPSI07_RS10550 0.45 -0.9 570,482 + RPSI07_RS10550 0.45 -0.4 570,482 + RPSI07_RS10550 0.45 -0.6 570,483 - RPSI07_RS10550 0.45 +0.3 570,498 + RPSI07_RS10550 0.46 -0.1 570,556 + RPSI07_RS10550 0.48 +1.5 570,557 + RPSI07_RS10550 0.48 +0.6 570,557 + RPSI07_RS10550 0.48 -0.3 570,557 + RPSI07_RS10550 0.48 +1.6 570,557 + RPSI07_RS10550 0.48 +0.9 570,557 + RPSI07_RS10550 0.48 -2.3 570,557 + RPSI07_RS10550 0.48 -0.2 570,557 + RPSI07_RS10550 0.48 +0.1 570,557 + RPSI07_RS10550 0.48 +2.1 570,557 + RPSI07_RS10550 0.48 -1.8 570,558 - RPSI07_RS10550 0.48 +2.3 570,558 - RPSI07_RS10550 0.48 -0.2 570,558 - RPSI07_RS10550 0.48 +0.3 570,558 - RPSI07_RS10550 0.48 +1.2 570,558 - RPSI07_RS10550 0.48 -0.4 570,558 - RPSI07_RS10550 0.48 -2.1 570,558 - RPSI07_RS10550 0.48 -0.3 570,590 + RPSI07_RS10550 0.50 +2.8 570,590 + RPSI07_RS10550 0.50 +0.4 570,591 - RPSI07_RS10550 0.50 +3.9 570,645 - RPSI07_RS10550 0.52 -0.6 570,645 - RPSI07_RS10550 0.52 -0.7 570,645 - RPSI07_RS10550 0.52 -1.1 570,645 - RPSI07_RS10550 0.52 -2.4 570,791 + RPSI07_RS10550 0.58 -1.7 570,792 - RPSI07_RS10550 0.58 -0.9 570,792 - RPSI07_RS10550 0.58 +1.5 571,076 + RPSI07_RS10550 0.70 +0.2 571,076 + RPSI07_RS10550 0.70 -0.4 571,077 - RPSI07_RS10550 0.70 -0.7 571,077 - RPSI07_RS10550 0.70 +0.4 571,077 - RPSI07_RS10550 0.70 -0.4 571,184 + RPSI07_RS10550 0.74 -0.1 571,185 - RPSI07_RS10550 0.74 -0.5 571,217 + RPSI07_RS10550 0.76 +3.1 571,218 - RPSI07_RS10550 0.76 +1.2 571,218 - RPSI07_RS10550 0.76 +1.6 571,244 + RPSI07_RS10550 0.77 +0.0 571,263 + RPSI07_RS10550 0.78 +1.7 571,264 - RPSI07_RS10550 0.78 -0.2 571,397 + RPSI07_RS10550 0.83 -0.5 571,398 - RPSI07_RS10550 0.83 +1.2 571,398 - RPSI07_RS10550 0.83 -0.1 571,572 - -1.7 571,828 + -1.0 571,828 + +0.3 571,843 + -0.3 571,843 + +7.5 571,843 + +3.3 571,869 + +3.1 571,870 - -1.3 571,870 - +0.9 572,518 - RPSI07_RS10555 0.76 +0.2 572,518 - RPSI07_RS10555 0.76 -2.4
Or see this region's nucleotide sequence