Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05240

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS05235 and RPSI07_RS05240 are separated by 13 nucleotidesRPSI07_RS05240 and RPSI07_RS05245 are separated by 38 nucleotides RPSI07_RS05235: RPSI07_RS05235 - hypothetical protein, at 1,431,483 to 1,435,601 _RS05235 RPSI07_RS05240: RPSI07_RS05240 - DUF1795 domain-containing protein, at 1,435,615 to 1,436,037 _RS05240 RPSI07_RS05245: RPSI07_RS05245 - type VI secretion system tip protein VgrG, at 1,436,076 to 1,438,358 _RS05245 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1434.779 kb on - strand, within RPSI07_RS05235at 1435.427 kb on - strandat 1435.462 kb on + strandat 1435.462 kb on + strandat 1435.462 kb on + strandat 1435.463 kb on - strandat 1435.463 kb on - strandat 1435.781 kb on + strand, within RPSI07_RS05240at 1435.781 kb on + strand, within RPSI07_RS05240at 1435.782 kb on - strand, within RPSI07_RS05240at 1435.782 kb on - strand, within RPSI07_RS05240at 1435.810 kb on + strand, within RPSI07_RS05240at 1435.841 kb on + strand, within RPSI07_RS05240at 1435.886 kb on + strand, within RPSI07_RS05240at 1435.887 kb on - strand, within RPSI07_RS05240at 1436.033 kb on + strandat 1436.033 kb on + strandat 1436.033 kb on + strandat 1436.033 kb on + strandat 1436.033 kb on + strandat 1436.033 kb on + strandat 1436.034 kb on - strandat 1436.034 kb on - strandat 1436.034 kb on - strandat 1436.034 kb on - strandat 1436.034 kb on - strandat 1436.034 kb on - strandat 1436.186 kb on + strandat 1436.186 kb on + strandat 1436.186 kb on + strandat 1436.186 kb on + strandat 1436.187 kb on - strandat 1436.189 kb on - strandat 1436.198 kb on + strandat 1436.199 kb on - strandat 1436.329 kb on + strand, within RPSI07_RS05245at 1436.329 kb on + strand, within RPSI07_RS05245at 1436.329 kb on + strand, within RPSI07_RS05245at 1436.329 kb on + strand, within RPSI07_RS05245at 1436.330 kb on - strand, within RPSI07_RS05245at 1436.330 kb on - strand, within RPSI07_RS05245at 1436.330 kb on - strand, within RPSI07_RS05245at 1436.587 kb on + strand, within RPSI07_RS05245at 1436.587 kb on + strand, within RPSI07_RS05245at 1436.968 kb on + strandat 1436.968 kb on + strand, within RPSI07_RS05245at 1436.968 kb on + strand, within RPSI07_RS05245at 1436.968 kb on + strand, within RPSI07_RS05245at 1436.968 kb on + strand, within RPSI07_RS05245at 1436.968 kb on + strand, within RPSI07_RS05245at 1436.968 kb on + strand, within RPSI07_RS05245at 1436.968 kb on + strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.969 kb on - strand, within RPSI07_RS05245at 1436.974 kb on + strand, within RPSI07_RS05245at 1436.974 kb on + strand, within RPSI07_RS05245at 1436.974 kb on + strand, within RPSI07_RS05245at 1436.974 kb on + strand, within RPSI07_RS05245at 1436.975 kb on - strand, within RPSI07_RS05245at 1436.975 kb on - strand, within RPSI07_RS05245

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,434,779 - RPSI07_RS05235 0.80 +1.6
1,435,427 - +3.0
1,435,462 + +0.2
1,435,462 + -1.1
1,435,462 + +0.6
1,435,463 - -0.3
1,435,463 - -1.1
1,435,781 + RPSI07_RS05240 0.39 +0.8
1,435,781 + RPSI07_RS05240 0.39 -0.6
1,435,782 - RPSI07_RS05240 0.39 +2.7
1,435,782 - RPSI07_RS05240 0.39 -0.2
1,435,810 + RPSI07_RS05240 0.46 +1.2
1,435,841 + RPSI07_RS05240 0.53 -2.0
1,435,886 + RPSI07_RS05240 0.64 +2.2
1,435,887 - RPSI07_RS05240 0.64 -2.0
1,436,033 + +5.4
1,436,033 + +0.3
1,436,033 + -0.2
1,436,033 + +0.1
1,436,033 + -0.7
1,436,033 + +0.8
1,436,034 - -0.8
1,436,034 - +2.8
1,436,034 - +0.4
1,436,034 - +1.6
1,436,034 - +0.1
1,436,034 - -1.0
1,436,186 + -1.9
1,436,186 + -0.3
1,436,186 + -1.4
1,436,186 + +0.3
1,436,187 - -0.9
1,436,189 - -2.4
1,436,198 + -0.6
1,436,199 - -0.2
1,436,329 + RPSI07_RS05245 0.11 -0.8
1,436,329 + RPSI07_RS05245 0.11 +1.2
1,436,329 + RPSI07_RS05245 0.11 -2.2
1,436,329 + RPSI07_RS05245 0.11 +0.2
1,436,330 - RPSI07_RS05245 0.11 -2.4
1,436,330 - RPSI07_RS05245 0.11 -0.7
1,436,330 - RPSI07_RS05245 0.11 +2.0
1,436,587 + RPSI07_RS05245 0.22 -1.3
1,436,587 + RPSI07_RS05245 0.22 +0.4
1,436,968 + -1.1
1,436,968 + RPSI07_RS05245 0.39 +1.2
1,436,968 + RPSI07_RS05245 0.39 +1.9
1,436,968 + RPSI07_RS05245 0.39 +0.6
1,436,968 + RPSI07_RS05245 0.39 -0.2
1,436,968 + RPSI07_RS05245 0.39 -0.1
1,436,968 + RPSI07_RS05245 0.39 -0.2
1,436,968 + RPSI07_RS05245 0.39 +0.9
1,436,969 - RPSI07_RS05245 0.39 +1.2
1,436,969 - RPSI07_RS05245 0.39 +2.6
1,436,969 - RPSI07_RS05245 0.39 -0.7
1,436,969 - RPSI07_RS05245 0.39 +2.1
1,436,969 - RPSI07_RS05245 0.39 +0.8
1,436,969 - RPSI07_RS05245 0.39 -3.3
1,436,969 - RPSI07_RS05245 0.39 +2.3
1,436,969 - RPSI07_RS05245 0.39 -0.0
1,436,969 - RPSI07_RS05245 0.39 +1.6
1,436,974 + RPSI07_RS05245 0.39 -0.5
1,436,974 + RPSI07_RS05245 0.39 +0.6
1,436,974 + RPSI07_RS05245 0.39 -0.2
1,436,974 + RPSI07_RS05245 0.39 -1.1
1,436,975 - RPSI07_RS05245 0.39 +0.4
1,436,975 - RPSI07_RS05245 0.39 -1.1

Or see this region's nucleotide sequence