Strain Fitness in Escherichia coli BL21 around ECD_r00014

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03740 and ECD_03741 are separated by 11 nucleotidesECD_03741 and ECD_r00014 are separated by 377 nucleotidesECD_r00014 and ECD_t00071 are separated by 68 nucleotidesECD_t00071 and ECD_t00072 are separated by 42 nucleotidesECD_t00072 and ECD_r00015 are separated by 183 nucleotides ECD_03740: ECD_03740 - potassium transporter, at 3,939,958 to 3,941,409 _03740 ECD_03741: ECD_03741 - protoporphyrin oxidase, flavoprotein, at 3,941,421 to 3,941,966 _03741 ECD_r00014: ECD_r00014 - 16S ribosomal RNA, at 3,942,344 to 3,943,885 _r00014 ECD_t00071: ECD_t00071 - tRNA-Ile, at 3,943,954 to 3,944,030 _t00071 ECD_t00072: ECD_t00072 - tRNA-Ala, at 3,944,073 to 3,944,148 _t00072 ECD_r00015: ECD_r00015 - 23S ribosomal RNA, at 3,944,332 to 3,947,235 _r00015 Position (kb) 3942 3943 3944Strain fitness (log2 ratio) -1 0 1 2 3at 3941.367 kb on + strandat 3941.415 kb on + strandat 3941.415 kb on + strandat 3941.415 kb on + strandat 3941.416 kb on - strandat 3941.964 kb on + strandat 3941.965 kb on - strandat 3941.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,941,367 + +0.4
3,941,415 + +0.4
3,941,415 + -0.6
3,941,415 + +3.0
3,941,416 - -0.9
3,941,964 + -0.0
3,941,965 - +0.3
3,941,971 - +1.1

Or see this region's nucleotide sequence