Strain Fitness in Escherichia coli BL21 around ECD_04189

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04187 and ECD_04188 are separated by 12 nucleotidesECD_04188 and ECD_04189 are separated by 19 nucleotidesECD_04189 and ECD_04190 are separated by 242 nucleotides ECD_04187: ECD_04187 - minor component of type 1 fimbriae, at 4,457,021 to 4,457,551 _04187 ECD_04188: ECD_04188 - minor component of type 1 fimbriae, at 4,457,564 to 4,458,067 _04188 ECD_04189: ECD_04189 - minor component of type 1 fimbriae, at 4,458,087 to 4,458,989 _04189 ECD_04190: ECD_04190 - fructuronate transporter, at 4,459,232 to 4,460,575 _04190 Position (kb) 4458 4459Strain fitness (log2 ratio) -2 -1 0 1 2at 4457.335 kb on + strand, within ECD_04187at 4457.335 kb on + strand, within ECD_04187at 4457.365 kb on - strand, within ECD_04187at 4457.456 kb on - strand, within ECD_04187at 4457.468 kb on + strand, within ECD_04187at 4457.512 kb on + strandat 4457.513 kb on - strandat 4457.585 kb on + strandat 4457.585 kb on + strandat 4457.586 kb on - strandat 4457.586 kb on - strandat 4457.589 kb on + strandat 4457.589 kb on + strandat 4457.590 kb on - strandat 4457.601 kb on + strandat 4457.601 kb on + strandat 4457.681 kb on - strand, within ECD_04188at 4457.681 kb on - strand, within ECD_04188at 4457.737 kb on + strand, within ECD_04188at 4457.737 kb on + strand, within ECD_04188at 4457.737 kb on + strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.789 kb on - strand, within ECD_04188at 4457.789 kb on - strand, within ECD_04188at 4457.889 kb on + strand, within ECD_04188at 4457.890 kb on - strand, within ECD_04188at 4457.896 kb on - strand, within ECD_04188at 4457.896 kb on - strand, within ECD_04188at 4457.924 kb on - strand, within ECD_04188at 4458.043 kb on + strandat 4458.053 kb on + strandat 4458.053 kb on + strandat 4458.053 kb on + strandat 4458.054 kb on - strandat 4458.054 kb on - strandat 4458.054 kb on - strandat 4458.054 kb on - strandat 4458.056 kb on - strandat 4458.059 kb on + strandat 4458.086 kb on - strandat 4458.086 kb on - strandat 4458.098 kb on + strandat 4458.098 kb on + strandat 4458.098 kb on + strandat 4458.099 kb on - strandat 4458.101 kb on + strandat 4458.210 kb on + strand, within ECD_04189at 4458.211 kb on - strand, within ECD_04189at 4458.312 kb on + strand, within ECD_04189at 4458.312 kb on + strand, within ECD_04189at 4458.313 kb on - strand, within ECD_04189at 4458.313 kb on - strand, within ECD_04189at 4458.339 kb on + strand, within ECD_04189at 4458.373 kb on + strand, within ECD_04189at 4458.378 kb on + strand, within ECD_04189at 4458.380 kb on + strand, within ECD_04189at 4458.380 kb on + strand, within ECD_04189at 4458.389 kb on + strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.393 kb on + strand, within ECD_04189at 4458.432 kb on + strand, within ECD_04189at 4458.432 kb on + strand, within ECD_04189at 4458.435 kb on - strand, within ECD_04189at 4458.524 kb on - strand, within ECD_04189at 4458.537 kb on - strand, within ECD_04189at 4458.558 kb on + strand, within ECD_04189at 4458.558 kb on + strand, within ECD_04189at 4458.558 kb on + strand, within ECD_04189at 4458.559 kb on - strand, within ECD_04189at 4458.559 kb on - strand, within ECD_04189at 4458.590 kb on + strand, within ECD_04189at 4458.595 kb on - strand, within ECD_04189at 4458.705 kb on + strand, within ECD_04189at 4458.732 kb on + strand, within ECD_04189at 4458.735 kb on + strand, within ECD_04189at 4458.735 kb on + strand, within ECD_04189at 4458.735 kb on + strand, within ECD_04189at 4458.735 kb on + strand, within ECD_04189at 4458.735 kb on + strand, within ECD_04189at 4458.735 kb on + strand, within ECD_04189at 4458.736 kb on - strand, within ECD_04189at 4458.736 kb on - strand, within ECD_04189at 4458.736 kb on - strand, within ECD_04189at 4458.736 kb on - strand, within ECD_04189at 4458.736 kb on - strand, within ECD_04189at 4458.878 kb on - strand, within ECD_04189at 4458.878 kb on - strand, within ECD_04189at 4458.916 kb on - strandat 4458.982 kb on - strandat 4459.009 kb on + strandat 4459.025 kb on + strandat 4459.025 kb on + strandat 4459.028 kb on + strandat 4459.137 kb on + strandat 4459.138 kb on - strandat 4459.233 kb on + strandat 4459.239 kb on - strandat 4459.249 kb on + strandat 4459.261 kb on + strandat 4459.262 kb on - strandat 4459.322 kb on + strandat 4459.338 kb on + strandat 4459.370 kb on - strand, within ECD_04190at 4459.457 kb on + strand, within ECD_04190at 4459.457 kb on + strand, within ECD_04190at 4459.529 kb on + strand, within ECD_04190at 4459.530 kb on - strand, within ECD_04190at 4459.530 kb on - strand, within ECD_04190at 4459.530 kb on - strand, within ECD_04190at 4459.557 kb on + strand, within ECD_04190at 4459.557 kb on + strand, within ECD_04190at 4459.567 kb on + strand, within ECD_04190at 4459.568 kb on - strand, within ECD_04190at 4459.672 kb on + strand, within ECD_04190at 4459.742 kb on + strand, within ECD_04190at 4459.743 kb on - strand, within ECD_04190at 4459.792 kb on + strand, within ECD_04190at 4459.861 kb on + strand, within ECD_04190at 4459.862 kb on - strand, within ECD_04190at 4459.916 kb on - strand, within ECD_04190at 4459.921 kb on + strand, within ECD_04190at 4459.922 kb on - strand, within ECD_04190at 4459.922 kb on - strand, within ECD_04190at 4459.922 kb on - strand, within ECD_04190at 4459.925 kb on + strand, within ECD_04190

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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4,457,335 + ECD_04187 0.59 -0.2
4,457,335 + ECD_04187 0.59 +0.3
4,457,365 - ECD_04187 0.65 +0.8
4,457,456 - ECD_04187 0.82 -0.2
4,457,468 + ECD_04187 0.84 +0.3
4,457,512 + -0.1
4,457,513 - +0.2
4,457,585 + -0.5
4,457,585 + -1.2
4,457,586 - -0.2
4,457,586 - -0.3
4,457,589 + +0.7
4,457,589 + +0.6
4,457,590 - +0.7
4,457,601 + +0.7
4,457,601 + +0.1
4,457,681 - ECD_04188 0.23 +1.0
4,457,681 - ECD_04188 0.23 +0.2
4,457,737 + ECD_04188 0.34 +0.7
4,457,737 + ECD_04188 0.34 +0.6
4,457,737 + ECD_04188 0.34 +0.3
4,457,738 - ECD_04188 0.35 -0.4
4,457,738 - ECD_04188 0.35 +1.1
4,457,738 - ECD_04188 0.35 -0.1
4,457,738 - ECD_04188 0.35 +0.4
4,457,788 + ECD_04188 0.44 -0.2
4,457,788 + ECD_04188 0.44 +0.2
4,457,788 + ECD_04188 0.44 -0.2
4,457,788 + ECD_04188 0.44 +2.3
4,457,789 - ECD_04188 0.45 -0.5
4,457,789 - ECD_04188 0.45 -0.4
4,457,889 + ECD_04188 0.64 +1.0
4,457,890 - ECD_04188 0.65 +0.5
4,457,896 - ECD_04188 0.66 +0.8
4,457,896 - ECD_04188 0.66 +0.4
4,457,924 - ECD_04188 0.71 -0.0
4,458,043 + +1.1
4,458,053 + -1.1
4,458,053 + +0.1
4,458,053 + +1.0
4,458,054 - +0.2
4,458,054 - +0.8
4,458,054 - +0.9
4,458,054 - -1.0
4,458,056 - +0.1
4,458,059 + -1.0
4,458,086 - -0.5
4,458,086 - -0.1
4,458,098 + +0.6
4,458,098 + -0.3
4,458,098 + +0.6
4,458,099 - -0.6
4,458,101 + -0.1
4,458,210 + ECD_04189 0.14 +0.8
4,458,211 - ECD_04189 0.14 +0.2
4,458,312 + ECD_04189 0.25 +0.4
4,458,312 + ECD_04189 0.25 +0.4
4,458,313 - ECD_04189 0.25 +1.4
4,458,313 - ECD_04189 0.25 +0.4
4,458,339 + ECD_04189 0.28 -0.8
4,458,373 + ECD_04189 0.32 +0.2
4,458,378 + ECD_04189 0.32 +0.0
4,458,380 + ECD_04189 0.32 +0.4
4,458,380 + ECD_04189 0.32 +0.4
4,458,389 + ECD_04189 0.33 +1.4
4,458,390 - ECD_04189 0.34 -0.2
4,458,390 - ECD_04189 0.34 +0.4
4,458,390 - ECD_04189 0.34 +0.0
4,458,390 - ECD_04189 0.34 +0.2
4,458,393 + ECD_04189 0.34 +0.9
4,458,432 + ECD_04189 0.38 +1.1
4,458,432 + ECD_04189 0.38 +0.8
4,458,435 - ECD_04189 0.39 +0.4
4,458,524 - ECD_04189 0.48 +0.8
4,458,537 - ECD_04189 0.50 +0.4
4,458,558 + ECD_04189 0.52 -0.1
4,458,558 + ECD_04189 0.52 -0.6
4,458,558 + ECD_04189 0.52 -0.4
4,458,559 - ECD_04189 0.52 -0.3
4,458,559 - ECD_04189 0.52 -0.1
4,458,590 + ECD_04189 0.56 +0.5
4,458,595 - ECD_04189 0.56 +0.6
4,458,705 + ECD_04189 0.68 -0.1
4,458,732 + ECD_04189 0.71 -0.5
4,458,735 + ECD_04189 0.72 -0.3
4,458,735 + ECD_04189 0.72 +0.5
4,458,735 + ECD_04189 0.72 -1.9
4,458,735 + ECD_04189 0.72 +0.1
4,458,735 + ECD_04189 0.72 +0.2
4,458,735 + ECD_04189 0.72 +0.3
4,458,736 - ECD_04189 0.72 -0.1
4,458,736 - ECD_04189 0.72 +0.3
4,458,736 - ECD_04189 0.72 -0.9
4,458,736 - ECD_04189 0.72 +0.4
4,458,736 - ECD_04189 0.72 +0.9
4,458,878 - ECD_04189 0.88 -0.2
4,458,878 - ECD_04189 0.88 +2.0
4,458,916 - -1.1
4,458,982 - +0.4
4,459,009 + +0.5
4,459,025 + +0.0
4,459,025 + +1.3
4,459,028 + +0.2
4,459,137 + -0.3
4,459,138 - +0.6
4,459,233 + +0.1
4,459,239 - -0.5
4,459,249 + +0.2
4,459,261 + +0.5
4,459,262 - +2.2
4,459,322 + -1.3
4,459,338 + +0.5
4,459,370 - ECD_04190 0.10 +0.3
4,459,457 + ECD_04190 0.17 +0.3
4,459,457 + ECD_04190 0.17 +0.1
4,459,529 + ECD_04190 0.22 -0.6
4,459,530 - ECD_04190 0.22 +0.6
4,459,530 - ECD_04190 0.22 +1.1
4,459,530 - ECD_04190 0.22 +0.0
4,459,557 + ECD_04190 0.24 +1.3
4,459,557 + ECD_04190 0.24 +0.8
4,459,567 + ECD_04190 0.25 -0.5
4,459,568 - ECD_04190 0.25 -0.1
4,459,672 + ECD_04190 0.33 +1.2
4,459,742 + ECD_04190 0.38 +0.6
4,459,743 - ECD_04190 0.38 +0.1
4,459,792 + ECD_04190 0.42 -2.3
4,459,861 + ECD_04190 0.47 -0.2
4,459,862 - ECD_04190 0.47 +0.3
4,459,916 - ECD_04190 0.51 +0.7
4,459,921 + ECD_04190 0.51 +0.2
4,459,922 - ECD_04190 0.51 +0.3
4,459,922 - ECD_04190 0.51 +0.0
4,459,922 - ECD_04190 0.51 +0.4
4,459,925 + ECD_04190 0.52 +0.0

Or see this region's nucleotide sequence