Strain Fitness in Escherichia coli BL21 around ECD_04187

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04186 and ECD_04187 are separated by 9 nucleotidesECD_04187 and ECD_04188 are separated by 12 nucleotidesECD_04188 and ECD_04189 are separated by 19 nucleotides ECD_04186: ECD_04186 - fimbrial usher outer membrane porin protein; FimCD chaperone-usher, at 4,454,375 to 4,457,011 _04186 ECD_04187: ECD_04187 - minor component of type 1 fimbriae, at 4,457,021 to 4,457,551 _04187 ECD_04188: ECD_04188 - minor component of type 1 fimbriae, at 4,457,564 to 4,458,067 _04188 ECD_04189: ECD_04189 - minor component of type 1 fimbriae, at 4,458,087 to 4,458,989 _04189 Position (kb) 4457 4458Strain fitness (log2 ratio) -1 0 1 2at 4456.028 kb on + strand, within ECD_04186at 4456.028 kb on + strand, within ECD_04186at 4456.072 kb on - strand, within ECD_04186at 4456.110 kb on - strand, within ECD_04186at 4456.111 kb on + strand, within ECD_04186at 4456.112 kb on - strand, within ECD_04186at 4456.171 kb on + strand, within ECD_04186at 4456.171 kb on + strand, within ECD_04186at 4456.172 kb on - strand, within ECD_04186at 4456.236 kb on - strand, within ECD_04186at 4456.284 kb on + strand, within ECD_04186at 4456.285 kb on - strand, within ECD_04186at 4456.286 kb on + strand, within ECD_04186at 4456.292 kb on - strand, within ECD_04186at 4456.319 kb on + strand, within ECD_04186at 4456.319 kb on + strand, within ECD_04186at 4456.319 kb on + strand, within ECD_04186at 4456.319 kb on + strand, within ECD_04186at 4456.320 kb on - strand, within ECD_04186at 4456.320 kb on - strand, within ECD_04186at 4456.321 kb on + strand, within ECD_04186at 4456.322 kb on - strand, within ECD_04186at 4456.361 kb on - strand, within ECD_04186at 4456.433 kb on - strand, within ECD_04186at 4456.441 kb on + strand, within ECD_04186at 4456.444 kb on + strand, within ECD_04186at 4456.454 kb on + strand, within ECD_04186at 4456.455 kb on - strand, within ECD_04186at 4456.497 kb on + strand, within ECD_04186at 4456.619 kb on + strand, within ECD_04186at 4456.619 kb on + strand, within ECD_04186at 4456.663 kb on + strand, within ECD_04186at 4456.871 kb on + strandat 4456.949 kb on + strandat 4456.950 kb on - strandat 4456.980 kb on + strandat 4456.981 kb on - strandat 4456.983 kb on + strandat 4457.040 kb on - strandat 4457.335 kb on + strand, within ECD_04187at 4457.335 kb on + strand, within ECD_04187at 4457.365 kb on - strand, within ECD_04187at 4457.456 kb on - strand, within ECD_04187at 4457.468 kb on + strand, within ECD_04187at 4457.512 kb on + strandat 4457.513 kb on - strandat 4457.585 kb on + strandat 4457.585 kb on + strandat 4457.586 kb on - strandat 4457.586 kb on - strandat 4457.589 kb on + strandat 4457.589 kb on + strandat 4457.590 kb on - strandat 4457.601 kb on + strandat 4457.601 kb on + strandat 4457.681 kb on - strand, within ECD_04188at 4457.681 kb on - strand, within ECD_04188at 4457.737 kb on + strand, within ECD_04188at 4457.737 kb on + strand, within ECD_04188at 4457.737 kb on + strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.738 kb on - strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.788 kb on + strand, within ECD_04188at 4457.789 kb on - strand, within ECD_04188at 4457.789 kb on - strand, within ECD_04188at 4457.889 kb on + strand, within ECD_04188at 4457.890 kb on - strand, within ECD_04188at 4457.896 kb on - strand, within ECD_04188at 4457.896 kb on - strand, within ECD_04188at 4457.924 kb on - strand, within ECD_04188at 4458.043 kb on + strandat 4458.053 kb on + strandat 4458.053 kb on + strandat 4458.053 kb on + strandat 4458.054 kb on - strandat 4458.054 kb on - strandat 4458.054 kb on - strandat 4458.054 kb on - strandat 4458.056 kb on - strandat 4458.059 kb on + strandat 4458.086 kb on - strandat 4458.086 kb on - strandat 4458.098 kb on + strandat 4458.098 kb on + strandat 4458.098 kb on + strandat 4458.099 kb on - strandat 4458.101 kb on + strandat 4458.210 kb on + strand, within ECD_04189at 4458.211 kb on - strand, within ECD_04189at 4458.312 kb on + strand, within ECD_04189at 4458.312 kb on + strand, within ECD_04189at 4458.313 kb on - strand, within ECD_04189at 4458.313 kb on - strand, within ECD_04189at 4458.339 kb on + strand, within ECD_04189at 4458.373 kb on + strand, within ECD_04189at 4458.378 kb on + strand, within ECD_04189at 4458.380 kb on + strand, within ECD_04189at 4458.380 kb on + strand, within ECD_04189at 4458.389 kb on + strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.390 kb on - strand, within ECD_04189at 4458.393 kb on + strand, within ECD_04189at 4458.432 kb on + strand, within ECD_04189at 4458.432 kb on + strand, within ECD_04189at 4458.435 kb on - strand, within ECD_04189at 4458.524 kb on - strand, within ECD_04189at 4458.537 kb on - strand, within ECD_04189

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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4,456,028 + ECD_04186 0.63 -0.9
4,456,028 + ECD_04186 0.63 +2.4
4,456,072 - ECD_04186 0.64 +0.0
4,456,110 - ECD_04186 0.66 +2.6
4,456,111 + ECD_04186 0.66 +0.4
4,456,112 - ECD_04186 0.66 -0.3
4,456,171 + ECD_04186 0.68 +0.4
4,456,171 + ECD_04186 0.68 +0.5
4,456,172 - ECD_04186 0.68 +0.3
4,456,236 - ECD_04186 0.71 +0.1
4,456,284 + ECD_04186 0.72 -0.6
4,456,285 - ECD_04186 0.72 +0.9
4,456,286 + ECD_04186 0.72 +1.7
4,456,292 - ECD_04186 0.73 +0.1
4,456,319 + ECD_04186 0.74 -1.1
4,456,319 + ECD_04186 0.74 +0.4
4,456,319 + ECD_04186 0.74 -1.3
4,456,319 + ECD_04186 0.74 +0.8
4,456,320 - ECD_04186 0.74 +1.4
4,456,320 - ECD_04186 0.74 +0.3
4,456,321 + ECD_04186 0.74 -0.4
4,456,322 - ECD_04186 0.74 -0.7
4,456,361 - ECD_04186 0.75 -0.4
4,456,433 - ECD_04186 0.78 +0.5
4,456,441 + ECD_04186 0.78 +0.7
4,456,444 + ECD_04186 0.78 +1.1
4,456,454 + ECD_04186 0.79 +1.3
4,456,455 - ECD_04186 0.79 +1.1
4,456,497 + ECD_04186 0.80 +0.7
4,456,619 + ECD_04186 0.85 -1.6
4,456,619 + ECD_04186 0.85 +0.5
4,456,663 + ECD_04186 0.87 -1.5
4,456,871 + -0.1
4,456,949 + +1.3
4,456,950 - -0.5
4,456,980 + -0.1
4,456,981 - +0.8
4,456,983 + +1.2
4,457,040 - +0.4
4,457,335 + ECD_04187 0.59 -0.2
4,457,335 + ECD_04187 0.59 +0.3
4,457,365 - ECD_04187 0.65 +0.8
4,457,456 - ECD_04187 0.82 -0.2
4,457,468 + ECD_04187 0.84 +0.3
4,457,512 + -0.1
4,457,513 - +0.2
4,457,585 + -0.5
4,457,585 + -1.2
4,457,586 - -0.2
4,457,586 - -0.3
4,457,589 + +0.7
4,457,589 + +0.6
4,457,590 - +0.7
4,457,601 + +0.7
4,457,601 + +0.1
4,457,681 - ECD_04188 0.23 +1.0
4,457,681 - ECD_04188 0.23 +0.2
4,457,737 + ECD_04188 0.34 +0.7
4,457,737 + ECD_04188 0.34 +0.6
4,457,737 + ECD_04188 0.34 +0.3
4,457,738 - ECD_04188 0.35 -0.4
4,457,738 - ECD_04188 0.35 +1.1
4,457,738 - ECD_04188 0.35 -0.1
4,457,738 - ECD_04188 0.35 +0.4
4,457,788 + ECD_04188 0.44 -0.2
4,457,788 + ECD_04188 0.44 +0.2
4,457,788 + ECD_04188 0.44 -0.2
4,457,788 + ECD_04188 0.44 +2.3
4,457,789 - ECD_04188 0.45 -0.5
4,457,789 - ECD_04188 0.45 -0.4
4,457,889 + ECD_04188 0.64 +1.0
4,457,890 - ECD_04188 0.65 +0.5
4,457,896 - ECD_04188 0.66 +0.8
4,457,896 - ECD_04188 0.66 +0.4
4,457,924 - ECD_04188 0.71 -0.0
4,458,043 + +1.1
4,458,053 + -1.1
4,458,053 + +0.1
4,458,053 + +1.0
4,458,054 - +0.2
4,458,054 - +0.8
4,458,054 - +0.9
4,458,054 - -1.0
4,458,056 - +0.1
4,458,059 + -1.0
4,458,086 - -0.5
4,458,086 - -0.1
4,458,098 + +0.6
4,458,098 + -0.3
4,458,098 + +0.6
4,458,099 - -0.6
4,458,101 + -0.1
4,458,210 + ECD_04189 0.14 +0.8
4,458,211 - ECD_04189 0.14 +0.2
4,458,312 + ECD_04189 0.25 +0.4
4,458,312 + ECD_04189 0.25 +0.4
4,458,313 - ECD_04189 0.25 +1.4
4,458,313 - ECD_04189 0.25 +0.4
4,458,339 + ECD_04189 0.28 -0.8
4,458,373 + ECD_04189 0.32 +0.2
4,458,378 + ECD_04189 0.32 +0.0
4,458,380 + ECD_04189 0.32 +0.4
4,458,380 + ECD_04189 0.32 +0.4
4,458,389 + ECD_04189 0.33 +1.4
4,458,390 - ECD_04189 0.34 -0.2
4,458,390 - ECD_04189 0.34 +0.4
4,458,390 - ECD_04189 0.34 +0.0
4,458,390 - ECD_04189 0.34 +0.2
4,458,393 + ECD_04189 0.34 +0.9
4,458,432 + ECD_04189 0.38 +1.1
4,458,432 + ECD_04189 0.38 +0.8
4,458,435 - ECD_04189 0.39 +0.4
4,458,524 - ECD_04189 0.48 +0.8
4,458,537 - ECD_04189 0.50 +0.4

Or see this region's nucleotide sequence