Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04171 and ECD_04172 are separated by 785 nucleotides ECD_04172 and ECD_04173 are separated by 55 nucleotides ECD_04173 and ECD_04174 are separated by 11 nucleotides
ECD_04171: ECD_04171 - putative endoglucanase with Zn-dependent exopeptidase domain, at 4,439,033 to 4,440,154
_04171
ECD_04172: ECD_04172 - putative methyltransferase, at 4,440,940 to 4,441,686
_04172
ECD_04173: ECD_04173 - GNAT family putative N-acetyltransferase, at 4,441,742 to 4,442,287
_04173
ECD_04174: ECD_04174 - UPF0386 family protein, at 4,442,299 to 4,442,556
_04174
Position (kb) 4440
4441
4442 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4439.954 kb on - strand, within ECD_04171 at 4440.000 kb on + strand, within ECD_04171 at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.154 kb on + strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.155 kb on - strand at 4440.158 kb on + strand at 4440.158 kb on + strand at 4440.159 kb on - strand at 4440.166 kb on + strand at 4440.167 kb on - strand at 4440.167 kb on - strand at 4440.174 kb on - strand at 4440.199 kb on - strand at 4440.219 kb on + strand at 4440.315 kb on + strand at 4440.339 kb on - strand at 4440.362 kb on + strand at 4440.379 kb on + strand at 4440.381 kb on + strand at 4440.381 kb on + strand at 4440.381 kb on + strand at 4440.381 kb on + strand at 4440.381 kb on + strand at 4440.382 kb on - strand at 4440.417 kb on - strand at 4440.461 kb on - strand at 4440.467 kb on + strand at 4440.468 kb on - strand at 4440.468 kb on - strand at 4440.500 kb on + strand at 4440.501 kb on - strand at 4440.506 kb on - strand at 4440.506 kb on - strand at 4440.530 kb on - strand at 4440.530 kb on - strand at 4440.545 kb on - strand at 4440.545 kb on - strand at 4440.546 kb on + strand at 4440.546 kb on + strand at 4440.547 kb on - strand at 4440.547 kb on - strand at 4440.547 kb on - strand at 4440.550 kb on + strand at 4440.551 kb on - strand at 4440.621 kb on + strand at 4440.621 kb on + strand at 4440.622 kb on - strand at 4440.622 kb on - strand at 4440.734 kb on + strand at 4440.735 kb on - strand at 4440.735 kb on - strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.813 kb on + strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.814 kb on - strand at 4440.825 kb on + strand at 4440.825 kb on + strand at 4440.858 kb on + strand at 4440.858 kb on + strand at 4440.859 kb on - strand at 4440.862 kb on + strand at 4440.862 kb on + strand at 4440.862 kb on + strand at 4440.863 kb on - strand at 4440.863 kb on - strand at 4440.863 kb on - strand at 4440.876 kb on + strand at 4440.877 kb on - strand at 4440.877 kb on - strand at 4440.877 kb on - strand at 4440.924 kb on + strand at 4440.999 kb on - strand at 4441.018 kb on + strand, within ECD_04172 at 4441.231 kb on + strand, within ECD_04172 at 4441.276 kb on - strand, within ECD_04172 at 4441.395 kb on - strand, within ECD_04172 at 4441.417 kb on - strand, within ECD_04172 at 4441.671 kb on + strand at 4441.672 kb on - strand at 4441.672 kb on - strand at 4441.739 kb on + strand at 4441.739 kb on + strand at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.917 kb on + strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4441.918 kb on - strand, within ECD_04173 at 4442.016 kb on + strand, within ECD_04173 at 4442.016 kb on + strand, within ECD_04173 at 4442.171 kb on + strand, within ECD_04173 at 4442.172 kb on - strand, within ECD_04173 at 4442.260 kb on + strand at 4442.279 kb on + strand at 4442.280 kb on - strand at 4442.329 kb on - strand, within ECD_04174 at 4442.451 kb on - strand, within ECD_04174 at 4442.499 kb on + strand, within ECD_04174 at 4442.511 kb on + strand, within ECD_04174 at 4442.524 kb on + strand, within ECD_04174 at 4442.524 kb on + strand, within ECD_04174 at 4442.525 kb on - strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.529 kb on + strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.530 kb on - strand, within ECD_04174 at 4442.557 kb on - strand at 4442.568 kb on + strand at 4442.568 kb on + strand at 4442.569 kb on - strand at 4442.569 kb on - strand at 4442.569 kb on - strand at 4442.572 kb on + strand at 4442.681 kb on + strand at 4442.682 kb on - strand at 4442.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 4,439,954 - ECD_04171 0.82 +0.0 4,440,000 + ECD_04171 0.86 +0.0 4,440,154 + +0.3 4,440,154 + +0.6 4,440,154 + +0.3 4,440,154 + +0.9 4,440,154 + +0.8 4,440,154 + +0.1 4,440,154 + -0.1 4,440,154 + -0.2 4,440,154 + +1.1 4,440,154 + +0.4 4,440,154 + +0.2 4,440,154 + +0.2 4,440,154 + -0.2 4,440,154 + +0.0 4,440,155 - +0.2 4,440,155 - -1.5 4,440,155 - +0.7 4,440,155 - -0.6 4,440,155 - +0.2 4,440,155 - -2.4 4,440,155 - -0.0 4,440,155 - -0.3 4,440,155 - +1.0 4,440,155 - +0.2 4,440,155 - -0.3 4,440,155 - +1.0 4,440,158 + +0.1 4,440,158 + +1.1 4,440,159 - -0.2 4,440,166 + +1.1 4,440,167 - +0.2 4,440,167 - +1.1 4,440,174 - +1.5 4,440,199 - +0.6 4,440,219 + -0.3 4,440,315 + -0.8 4,440,339 - +1.6 4,440,362 + -0.5 4,440,379 + -0.6 4,440,381 + +0.5 4,440,381 + +0.5 4,440,381 + -0.2 4,440,381 + +0.5 4,440,381 + +0.5 4,440,382 - +0.9 4,440,417 - +0.9 4,440,461 - +0.8 4,440,467 + +0.2 4,440,468 - -0.1 4,440,468 - -0.4 4,440,500 + +0.2 4,440,501 - -0.1 4,440,506 - -1.3 4,440,506 - +0.3 4,440,530 - +0.1 4,440,530 - +0.1 4,440,545 - -0.6 4,440,545 - +0.0 4,440,546 + +0.2 4,440,546 + +0.5 4,440,547 - +0.1 4,440,547 - +0.8 4,440,547 - -0.6 4,440,550 + -0.1 4,440,551 - +0.8 4,440,621 + +0.5 4,440,621 + -3.1 4,440,622 - -0.2 4,440,622 - +0.6 4,440,734 + +0.8 4,440,735 - +0.8 4,440,735 - +0.3 4,440,813 + -0.6 4,440,813 + -0.4 4,440,813 + -0.2 4,440,813 + +1.2 4,440,813 + -1.4 4,440,813 + +1.2 4,440,813 + +0.2 4,440,813 + -0.3 4,440,814 - -0.3 4,440,814 - +0.4 4,440,814 - -0.5 4,440,814 - -0.2 4,440,814 - -0.2 4,440,814 - -0.6 4,440,814 - +0.1 4,440,814 - +0.1 4,440,814 - +0.8 4,440,814 - +1.0 4,440,814 - -0.1 4,440,814 - +0.1 4,440,814 - +0.1 4,440,825 + +0.0 4,440,825 + +0.5 4,440,858 + -0.6 4,440,858 + +1.0 4,440,859 - -0.2 4,440,862 + -0.8 4,440,862 + -0.6 4,440,862 + +0.6 4,440,863 - +0.6 4,440,863 - +0.5 4,440,863 - -0.7 4,440,876 + -1.9 4,440,877 - -0.2 4,440,877 - +0.0 4,440,877 - -0.4 4,440,924 + +0.9 4,440,999 - +0.2 4,441,018 + ECD_04172 0.10 -0.1 4,441,231 + ECD_04172 0.39 -0.8 4,441,276 - ECD_04172 0.45 -0.7 4,441,395 - ECD_04172 0.61 -0.6 4,441,417 - ECD_04172 0.64 +0.6 4,441,671 + +0.4 4,441,672 - -0.2 4,441,672 - +0.5 4,441,739 + -0.4 4,441,739 + +0.3 4,441,917 + ECD_04173 0.32 -0.3 4,441,917 + ECD_04173 0.32 +0.1 4,441,917 + ECD_04173 0.32 +0.3 4,441,917 + ECD_04173 0.32 -0.8 4,441,917 + ECD_04173 0.32 -0.2 4,441,918 - ECD_04173 0.32 +0.0 4,441,918 - ECD_04173 0.32 +0.4 4,441,918 - ECD_04173 0.32 +0.7 4,441,918 - ECD_04173 0.32 +0.2 4,442,016 + ECD_04173 0.50 +0.3 4,442,016 + ECD_04173 0.50 -0.0 4,442,171 + ECD_04173 0.79 -0.1 4,442,172 - ECD_04173 0.79 +0.1 4,442,260 + -1.0 4,442,279 + +0.0 4,442,280 - -0.4 4,442,329 - ECD_04174 0.12 -0.6 4,442,451 - ECD_04174 0.59 +1.0 4,442,499 + ECD_04174 0.78 +1.0 4,442,511 + ECD_04174 0.82 -0.4 4,442,524 + ECD_04174 0.87 +1.1 4,442,524 + ECD_04174 0.87 +0.2 4,442,525 - ECD_04174 0.88 +0.1 4,442,529 + ECD_04174 0.89 -0.8 4,442,529 + ECD_04174 0.89 -0.3 4,442,529 + ECD_04174 0.89 +0.9 4,442,529 + ECD_04174 0.89 +0.4 4,442,530 - ECD_04174 0.90 -0.7 4,442,530 - ECD_04174 0.90 -0.4 4,442,530 - ECD_04174 0.90 -0.4 4,442,530 - ECD_04174 0.90 -0.6 4,442,530 - ECD_04174 0.90 -0.9 4,442,530 - ECD_04174 0.90 -0.0 4,442,557 - +0.4 4,442,568 + +0.3 4,442,568 + +0.2 4,442,569 - -0.3 4,442,569 - +0.3 4,442,569 - +0.1 4,442,572 + +0.2 4,442,681 + +0.1 4,442,682 - -1.1 4,442,682 - -0.3
Or see this region's nucleotide sequence