Strain Fitness in Escherichia coli BL21 around ECD_04157

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_04155 and ECD_04156 overlap by 4 nucleotidesECD_04156 and ECD_04157 are separated by 44 nucleotidesECD_04157 and ECD_04158 are separated by 86 nucleotides ECD_04155: ECD_04155 - ferric citrate ABC transporter permease, at 4,425,808 to 4,426,806 _04155 ECD_04156: ECD_04156 - ferric citrate ABC transporter periplasmic binding protein, at 4,426,803 to 4,427,705 _04156 ECD_04157: ECD_04157 - TonB-dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR-interacting protein, at 4,427,750 to 4,430,074 _04157 ECD_04158: ECD_04158 - anti-sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA-bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator, at 4,430,161 to 4,431,114 _04158 Position (kb) 4427 4428 4429 4430 4431Strain fitness (log2 ratio) -2 -1 0 1 2at 4426.752 kb on + strandat 4426.752 kb on + strandat 4426.752 kb on + strandat 4427.226 kb on - strand, within ECD_04156at 4427.226 kb on - strand, within ECD_04156at 4427.226 kb on - strand, within ECD_04156at 4427.327 kb on + strand, within ECD_04156at 4427.365 kb on + strand, within ECD_04156at 4427.365 kb on + strand, within ECD_04156at 4427.526 kb on - strand, within ECD_04156at 4427.613 kb on - strand, within ECD_04156at 4427.705 kb on + strandat 4427.705 kb on + strandat 4427.705 kb on + strandat 4427.706 kb on - strandat 4427.706 kb on - strandat 4427.706 kb on - strandat 4427.721 kb on - strandat 4427.773 kb on + strandat 4427.773 kb on + strandat 4427.775 kb on + strandat 4427.775 kb on + strandat 4427.775 kb on + strandat 4427.776 kb on - strandat 4427.776 kb on - strandat 4427.799 kb on + strandat 4427.799 kb on + strandat 4427.800 kb on - strandat 4427.800 kb on - strandat 4427.800 kb on - strandat 4427.800 kb on - strandat 4427.800 kb on - strandat 4427.907 kb on + strandat 4427.980 kb on + strandat 4428.052 kb on - strand, within ECD_04157at 4428.073 kb on + strand, within ECD_04157at 4428.073 kb on + strand, within ECD_04157at 4428.092 kb on + strand, within ECD_04157at 4428.106 kb on - strand, within ECD_04157at 4428.106 kb on - strand, within ECD_04157at 4428.141 kb on + strand, within ECD_04157at 4428.141 kb on + strand, within ECD_04157at 4428.141 kb on + strand, within ECD_04157at 4428.142 kb on - strand, within ECD_04157at 4428.142 kb on - strand, within ECD_04157at 4428.147 kb on + strand, within ECD_04157at 4428.147 kb on + strand, within ECD_04157at 4428.147 kb on + strand, within ECD_04157at 4428.157 kb on - strand, within ECD_04157at 4428.157 kb on - strand, within ECD_04157at 4428.202 kb on - strand, within ECD_04157at 4428.417 kb on + strand, within ECD_04157at 4428.418 kb on - strand, within ECD_04157at 4428.418 kb on - strand, within ECD_04157at 4428.423 kb on - strand, within ECD_04157at 4428.480 kb on + strand, within ECD_04157at 4428.481 kb on - strand, within ECD_04157at 4428.481 kb on - strand, within ECD_04157at 4428.511 kb on + strand, within ECD_04157at 4428.513 kb on + strand, within ECD_04157at 4428.514 kb on - strand, within ECD_04157at 4428.514 kb on - strand, within ECD_04157at 4428.580 kb on + strand, within ECD_04157at 4428.628 kb on - strand, within ECD_04157at 4428.714 kb on + strand, within ECD_04157at 4428.747 kb on + strand, within ECD_04157at 4428.748 kb on - strand, within ECD_04157at 4428.790 kb on + strand, within ECD_04157at 4428.832 kb on - strand, within ECD_04157at 4428.835 kb on + strand, within ECD_04157at 4428.836 kb on - strand, within ECD_04157at 4428.836 kb on - strand, within ECD_04157at 4428.874 kb on - strand, within ECD_04157at 4428.898 kb on - strand, within ECD_04157at 4428.919 kb on + strand, within ECD_04157at 4428.919 kb on + strand, within ECD_04157at 4428.920 kb on - strand, within ECD_04157at 4428.920 kb on - strand, within ECD_04157at 4429.066 kb on - strand, within ECD_04157at 4429.066 kb on - strand, within ECD_04157at 4429.066 kb on - strand, within ECD_04157at 4429.069 kb on - strand, within ECD_04157at 4429.110 kb on + strand, within ECD_04157at 4429.607 kb on + strand, within ECD_04157at 4429.608 kb on - strand, within ECD_04157at 4429.608 kb on - strand, within ECD_04157at 4429.608 kb on - strand, within ECD_04157at 4429.686 kb on - strand, within ECD_04157at 4429.775 kb on - strand, within ECD_04157at 4429.778 kb on - strand, within ECD_04157at 4429.907 kb on - strandat 4429.964 kb on - strandat 4429.966 kb on + strandat 4430.074 kb on + strandat 4430.075 kb on - strandat 4430.075 kb on - strandat 4430.108 kb on + strandat 4430.108 kb on + strandat 4430.109 kb on - strandat 4430.129 kb on - strandat 4430.397 kb on + strand, within ECD_04158at 4430.397 kb on + strand, within ECD_04158at 4430.397 kb on + strand, within ECD_04158at 4430.644 kb on - strand, within ECD_04158at 4430.644 kb on - strand, within ECD_04158at 4430.644 kb on - strand, within ECD_04158at 4430.644 kb on - strand, within ECD_04158at 4430.857 kb on + strand, within ECD_04158at 4430.857 kb on + strand, within ECD_04158at 4430.996 kb on + strand, within ECD_04158at 4430.997 kb on - strand, within ECD_04158at 4430.997 kb on - strand, within ECD_04158at 4430.997 kb on - strand, within ECD_04158at 4431.047 kb on - strandat 4431.057 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
4,426,752 + +0.3
4,426,752 + -0.0
4,426,752 + +0.8
4,427,226 - ECD_04156 0.47 -0.4
4,427,226 - ECD_04156 0.47 -0.9
4,427,226 - ECD_04156 0.47 -0.2
4,427,327 + ECD_04156 0.58 +0.6
4,427,365 + ECD_04156 0.62 +0.9
4,427,365 + ECD_04156 0.62 -0.1
4,427,526 - ECD_04156 0.80 +1.1
4,427,613 - ECD_04156 0.90 +0.1
4,427,705 + -1.1
4,427,705 + +0.6
4,427,705 + +0.1
4,427,706 - +0.4
4,427,706 - +0.1
4,427,706 - -0.3
4,427,721 - +0.5
4,427,773 + +0.6
4,427,773 + +0.0
4,427,775 + -1.2
4,427,775 + +0.7
4,427,775 + +0.4
4,427,776 - +0.5
4,427,776 - +0.2
4,427,799 + +0.5
4,427,799 + +0.3
4,427,800 - -0.0
4,427,800 - -0.3
4,427,800 - -0.2
4,427,800 - -0.0
4,427,800 - -0.0
4,427,907 + +0.5
4,427,980 + +1.3
4,428,052 - ECD_04157 0.13 +0.0
4,428,073 + ECD_04157 0.14 -0.3
4,428,073 + ECD_04157 0.14 +0.2
4,428,092 + ECD_04157 0.15 -0.1
4,428,106 - ECD_04157 0.15 +0.7
4,428,106 - ECD_04157 0.15 -0.2
4,428,141 + ECD_04157 0.17 +1.1
4,428,141 + ECD_04157 0.17 -0.2
4,428,141 + ECD_04157 0.17 +0.8
4,428,142 - ECD_04157 0.17 +0.0
4,428,142 - ECD_04157 0.17 -0.6
4,428,147 + ECD_04157 0.17 -0.1
4,428,147 + ECD_04157 0.17 +0.1
4,428,147 + ECD_04157 0.17 -0.6
4,428,157 - ECD_04157 0.18 -0.2
4,428,157 - ECD_04157 0.18 +0.8
4,428,202 - ECD_04157 0.19 -1.1
4,428,417 + ECD_04157 0.29 -1.1
4,428,418 - ECD_04157 0.29 +0.2
4,428,418 - ECD_04157 0.29 +0.2
4,428,423 - ECD_04157 0.29 -0.7
4,428,480 + ECD_04157 0.31 +0.5
4,428,481 - ECD_04157 0.31 +0.1
4,428,481 - ECD_04157 0.31 +0.5
4,428,511 + ECD_04157 0.33 -0.5
4,428,513 + ECD_04157 0.33 +0.6
4,428,514 - ECD_04157 0.33 +0.6
4,428,514 - ECD_04157 0.33 +0.6
4,428,580 + ECD_04157 0.36 +0.8
4,428,628 - ECD_04157 0.38 +0.0
4,428,714 + ECD_04157 0.41 -0.0
4,428,747 + ECD_04157 0.43 +0.2
4,428,748 - ECD_04157 0.43 -0.3
4,428,790 + ECD_04157 0.45 +0.7
4,428,832 - ECD_04157 0.47 +0.6
4,428,835 + ECD_04157 0.47 -0.1
4,428,836 - ECD_04157 0.47 +0.6
4,428,836 - ECD_04157 0.47 +0.8
4,428,874 - ECD_04157 0.48 -0.3
4,428,898 - ECD_04157 0.49 -0.2
4,428,919 + ECD_04157 0.50 -0.1
4,428,919 + ECD_04157 0.50 +0.5
4,428,920 - ECD_04157 0.50 +0.3
4,428,920 - ECD_04157 0.50 +0.2
4,429,066 - ECD_04157 0.57 +0.3
4,429,066 - ECD_04157 0.57 +0.4
4,429,066 - ECD_04157 0.57 -1.9
4,429,069 - ECD_04157 0.57 -0.2
4,429,110 + ECD_04157 0.58 +0.3
4,429,607 + ECD_04157 0.80 +2.0
4,429,608 - ECD_04157 0.80 -0.4
4,429,608 - ECD_04157 0.80 -0.3
4,429,608 - ECD_04157 0.80 -0.1
4,429,686 - ECD_04157 0.83 +1.6
4,429,775 - ECD_04157 0.87 -0.6
4,429,778 - ECD_04157 0.87 +0.4
4,429,907 - +1.0
4,429,964 - -0.4
4,429,966 + +0.7
4,430,074 + +0.2
4,430,075 - +1.5
4,430,075 - -0.2
4,430,108 + -0.6
4,430,108 + +0.8
4,430,109 - +0.3
4,430,129 - +0.4
4,430,397 + ECD_04158 0.25 -1.5
4,430,397 + ECD_04158 0.25 -0.3
4,430,397 + ECD_04158 0.25 +0.4
4,430,644 - ECD_04158 0.51 +0.9
4,430,644 - ECD_04158 0.51 +0.2
4,430,644 - ECD_04158 0.51 -0.3
4,430,644 - ECD_04158 0.51 +0.5
4,430,857 + ECD_04158 0.73 -0.0
4,430,857 + ECD_04158 0.73 -1.3
4,430,996 + ECD_04158 0.88 -0.3
4,430,997 - ECD_04158 0.88 +0.1
4,430,997 - ECD_04158 0.88 +0.2
4,430,997 - ECD_04158 0.88 -0.3
4,431,047 - -1.0
4,431,057 - +0.7

Or see this region's nucleotide sequence