Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04155 and ECD_04156 overlap by 4 nucleotides ECD_04156 and ECD_04157 are separated by 44 nucleotides ECD_04157 and ECD_04158 are separated by 86 nucleotides
ECD_04155: ECD_04155 - ferric citrate ABC transporter permease, at 4,425,808 to 4,426,806
_04155
ECD_04156: ECD_04156 - ferric citrate ABC transporter periplasmic binding protein, at 4,426,803 to 4,427,705
_04156
ECD_04157: ECD_04157 - TonB-dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR-interacting protein, at 4,427,750 to 4,430,074
_04157
ECD_04158: ECD_04158 - anti-sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA-bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator, at 4,430,161 to 4,431,114
_04158
Position (kb)
4427
4428
4429
4430
4431 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4426.752 kb on + strand at 4426.752 kb on + strand at 4426.752 kb on + strand at 4427.226 kb on - strand, within ECD_04156 at 4427.226 kb on - strand, within ECD_04156 at 4427.226 kb on - strand, within ECD_04156 at 4427.327 kb on + strand, within ECD_04156 at 4427.365 kb on + strand, within ECD_04156 at 4427.365 kb on + strand, within ECD_04156 at 4427.526 kb on - strand, within ECD_04156 at 4427.613 kb on - strand, within ECD_04156 at 4427.705 kb on + strand at 4427.705 kb on + strand at 4427.705 kb on + strand at 4427.706 kb on - strand at 4427.706 kb on - strand at 4427.706 kb on - strand at 4427.721 kb on - strand at 4427.773 kb on + strand at 4427.773 kb on + strand at 4427.775 kb on + strand at 4427.775 kb on + strand at 4427.775 kb on + strand at 4427.776 kb on - strand at 4427.776 kb on - strand at 4427.799 kb on + strand at 4427.799 kb on + strand at 4427.800 kb on - strand at 4427.800 kb on - strand at 4427.800 kb on - strand at 4427.800 kb on - strand at 4427.800 kb on - strand at 4427.907 kb on + strand at 4427.980 kb on + strand at 4428.052 kb on - strand, within ECD_04157 at 4428.073 kb on + strand, within ECD_04157 at 4428.073 kb on + strand, within ECD_04157 at 4428.092 kb on + strand, within ECD_04157 at 4428.106 kb on - strand, within ECD_04157 at 4428.106 kb on - strand, within ECD_04157 at 4428.141 kb on + strand, within ECD_04157 at 4428.141 kb on + strand, within ECD_04157 at 4428.141 kb on + strand, within ECD_04157 at 4428.142 kb on - strand, within ECD_04157 at 4428.142 kb on - strand, within ECD_04157 at 4428.147 kb on + strand, within ECD_04157 at 4428.147 kb on + strand, within ECD_04157 at 4428.147 kb on + strand, within ECD_04157 at 4428.157 kb on - strand, within ECD_04157 at 4428.157 kb on - strand, within ECD_04157 at 4428.202 kb on - strand, within ECD_04157 at 4428.417 kb on + strand, within ECD_04157 at 4428.418 kb on - strand, within ECD_04157 at 4428.418 kb on - strand, within ECD_04157 at 4428.423 kb on - strand, within ECD_04157 at 4428.480 kb on + strand, within ECD_04157 at 4428.481 kb on - strand, within ECD_04157 at 4428.481 kb on - strand, within ECD_04157 at 4428.511 kb on + strand, within ECD_04157 at 4428.513 kb on + strand, within ECD_04157 at 4428.514 kb on - strand, within ECD_04157 at 4428.514 kb on - strand, within ECD_04157 at 4428.580 kb on + strand, within ECD_04157 at 4428.628 kb on - strand, within ECD_04157 at 4428.714 kb on + strand, within ECD_04157 at 4428.747 kb on + strand, within ECD_04157 at 4428.748 kb on - strand, within ECD_04157 at 4428.790 kb on + strand, within ECD_04157 at 4428.832 kb on - strand, within ECD_04157 at 4428.835 kb on + strand, within ECD_04157 at 4428.836 kb on - strand, within ECD_04157 at 4428.836 kb on - strand, within ECD_04157 at 4428.874 kb on - strand, within ECD_04157 at 4428.898 kb on - strand, within ECD_04157 at 4428.919 kb on + strand, within ECD_04157 at 4428.919 kb on + strand, within ECD_04157 at 4428.920 kb on - strand, within ECD_04157 at 4428.920 kb on - strand, within ECD_04157 at 4429.066 kb on - strand, within ECD_04157 at 4429.066 kb on - strand, within ECD_04157 at 4429.066 kb on - strand, within ECD_04157 at 4429.069 kb on - strand, within ECD_04157 at 4429.110 kb on + strand, within ECD_04157 at 4429.607 kb on + strand, within ECD_04157 at 4429.608 kb on - strand, within ECD_04157 at 4429.608 kb on - strand, within ECD_04157 at 4429.608 kb on - strand, within ECD_04157 at 4429.686 kb on - strand, within ECD_04157 at 4429.775 kb on - strand, within ECD_04157 at 4429.778 kb on - strand, within ECD_04157 at 4429.907 kb on - strand at 4429.964 kb on - strand at 4429.966 kb on + strand at 4430.074 kb on + strand at 4430.075 kb on - strand at 4430.075 kb on - strand at 4430.108 kb on + strand at 4430.108 kb on + strand at 4430.109 kb on - strand at 4430.129 kb on - strand at 4430.397 kb on + strand, within ECD_04158 at 4430.397 kb on + strand, within ECD_04158 at 4430.397 kb on + strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.857 kb on + strand, within ECD_04158 at 4430.857 kb on + strand, within ECD_04158 at 4430.996 kb on + strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4431.047 kb on - strand at 4431.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 4,426,752 + +0.3 4,426,752 + -0.0 4,426,752 + +0.8 4,427,226 - ECD_04156 0.47 -0.4 4,427,226 - ECD_04156 0.47 -0.9 4,427,226 - ECD_04156 0.47 -0.2 4,427,327 + ECD_04156 0.58 +0.6 4,427,365 + ECD_04156 0.62 +0.9 4,427,365 + ECD_04156 0.62 -0.1 4,427,526 - ECD_04156 0.80 +1.1 4,427,613 - ECD_04156 0.90 +0.1 4,427,705 + -1.1 4,427,705 + +0.6 4,427,705 + +0.1 4,427,706 - +0.4 4,427,706 - +0.1 4,427,706 - -0.3 4,427,721 - +0.5 4,427,773 + +0.6 4,427,773 + +0.0 4,427,775 + -1.2 4,427,775 + +0.7 4,427,775 + +0.4 4,427,776 - +0.5 4,427,776 - +0.2 4,427,799 + +0.5 4,427,799 + +0.3 4,427,800 - -0.0 4,427,800 - -0.3 4,427,800 - -0.2 4,427,800 - -0.0 4,427,800 - -0.0 4,427,907 + +0.5 4,427,980 + +1.3 4,428,052 - ECD_04157 0.13 +0.0 4,428,073 + ECD_04157 0.14 -0.3 4,428,073 + ECD_04157 0.14 +0.2 4,428,092 + ECD_04157 0.15 -0.1 4,428,106 - ECD_04157 0.15 +0.7 4,428,106 - ECD_04157 0.15 -0.2 4,428,141 + ECD_04157 0.17 +1.1 4,428,141 + ECD_04157 0.17 -0.2 4,428,141 + ECD_04157 0.17 +0.8 4,428,142 - ECD_04157 0.17 +0.0 4,428,142 - ECD_04157 0.17 -0.6 4,428,147 + ECD_04157 0.17 -0.1 4,428,147 + ECD_04157 0.17 +0.1 4,428,147 + ECD_04157 0.17 -0.6 4,428,157 - ECD_04157 0.18 -0.2 4,428,157 - ECD_04157 0.18 +0.8 4,428,202 - ECD_04157 0.19 -1.1 4,428,417 + ECD_04157 0.29 -1.1 4,428,418 - ECD_04157 0.29 +0.2 4,428,418 - ECD_04157 0.29 +0.2 4,428,423 - ECD_04157 0.29 -0.7 4,428,480 + ECD_04157 0.31 +0.5 4,428,481 - ECD_04157 0.31 +0.1 4,428,481 - ECD_04157 0.31 +0.5 4,428,511 + ECD_04157 0.33 -0.5 4,428,513 + ECD_04157 0.33 +0.6 4,428,514 - ECD_04157 0.33 +0.6 4,428,514 - ECD_04157 0.33 +0.6 4,428,580 + ECD_04157 0.36 +0.8 4,428,628 - ECD_04157 0.38 +0.0 4,428,714 + ECD_04157 0.41 -0.0 4,428,747 + ECD_04157 0.43 +0.2 4,428,748 - ECD_04157 0.43 -0.3 4,428,790 + ECD_04157 0.45 +0.7 4,428,832 - ECD_04157 0.47 +0.6 4,428,835 + ECD_04157 0.47 -0.1 4,428,836 - ECD_04157 0.47 +0.6 4,428,836 - ECD_04157 0.47 +0.8 4,428,874 - ECD_04157 0.48 -0.3 4,428,898 - ECD_04157 0.49 -0.2 4,428,919 + ECD_04157 0.50 -0.1 4,428,919 + ECD_04157 0.50 +0.5 4,428,920 - ECD_04157 0.50 +0.3 4,428,920 - ECD_04157 0.50 +0.2 4,429,066 - ECD_04157 0.57 +0.3 4,429,066 - ECD_04157 0.57 +0.4 4,429,066 - ECD_04157 0.57 -1.9 4,429,069 - ECD_04157 0.57 -0.2 4,429,110 + ECD_04157 0.58 +0.3 4,429,607 + ECD_04157 0.80 +2.0 4,429,608 - ECD_04157 0.80 -0.4 4,429,608 - ECD_04157 0.80 -0.3 4,429,608 - ECD_04157 0.80 -0.1 4,429,686 - ECD_04157 0.83 +1.6 4,429,775 - ECD_04157 0.87 -0.6 4,429,778 - ECD_04157 0.87 +0.4 4,429,907 - +1.0 4,429,964 - -0.4 4,429,966 + +0.7 4,430,074 + +0.2 4,430,075 - +1.5 4,430,075 - -0.2 4,430,108 + -0.6 4,430,108 + +0.8 4,430,109 - +0.3 4,430,129 - +0.4 4,430,397 + ECD_04158 0.25 -1.5 4,430,397 + ECD_04158 0.25 -0.3 4,430,397 + ECD_04158 0.25 +0.4 4,430,644 - ECD_04158 0.51 +0.9 4,430,644 - ECD_04158 0.51 +0.2 4,430,644 - ECD_04158 0.51 -0.3 4,430,644 - ECD_04158 0.51 +0.5 4,430,857 + ECD_04158 0.73 -0.0 4,430,857 + ECD_04158 0.73 -1.3 4,430,996 + ECD_04158 0.88 -0.3 4,430,997 - ECD_04158 0.88 +0.1 4,430,997 - ECD_04158 0.88 +0.2 4,430,997 - ECD_04158 0.88 -0.3 4,431,047 - -1.0 4,431,057 - +0.7
Or see this region's nucleotide sequence