Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04121 and ECD_04122 are separated by 45 nucleotides ECD_04122 and ECD_04123 are separated by 192 nucleotides ECD_04123 and ECD_04124 are separated by 55 nucleotides
ECD_04121: ECD_04121 - protein inhibitor of RNase E, at 4,389,970 to 4,390,386
_04121
ECD_04122: ECD_04122 - GNAT family putative N-acetyltransferase, at 4,390,432 to 4,390,935
_04122
ECD_04123: ECD_04123 - DUF898 family inner membrane protein, at 4,391,128 to 4,392,324
_04123
ECD_04124: ECD_04124 - valyl-tRNA synthetase, at 4,392,380 to 4,395,235
_04124
Position (kb) 4391
4392
4393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4390.291 kb on + strand, within ECD_04121 at 4390.309 kb on + strand, within ECD_04121 at 4390.309 kb on + strand, within ECD_04121 at 4390.389 kb on - strand at 4390.397 kb on - strand at 4390.490 kb on + strand, within ECD_04122 at 4390.497 kb on + strand, within ECD_04122 at 4390.498 kb on - strand, within ECD_04122 at 4390.696 kb on + strand, within ECD_04122 at 4390.752 kb on - strand, within ECD_04122 at 4390.771 kb on - strand, within ECD_04122 at 4390.772 kb on + strand, within ECD_04122 at 4390.772 kb on + strand, within ECD_04122 at 4390.814 kb on + strand, within ECD_04122 at 4390.907 kb on - strand at 4392.092 kb on + strand, within ECD_04123 at 4392.092 kb on + strand, within ECD_04123 at 4392.211 kb on + strand at 4392.300 kb on + strand at 4392.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 4,390,291 + ECD_04121 0.77 -3.0 4,390,309 + ECD_04121 0.81 -2.2 4,390,309 + ECD_04121 0.81 -0.8 4,390,389 - +0.7 4,390,397 - -0.2 4,390,490 + ECD_04122 0.12 -1.0 4,390,497 + ECD_04122 0.13 +1.0 4,390,498 - ECD_04122 0.13 +0.3 4,390,696 + ECD_04122 0.52 +1.1 4,390,752 - ECD_04122 0.63 -1.8 4,390,771 - ECD_04122 0.67 +0.3 4,390,772 + ECD_04122 0.67 +2.0 4,390,772 + ECD_04122 0.67 -0.4 4,390,814 + ECD_04122 0.76 +1.2 4,390,907 - +0.0 4,392,092 + ECD_04123 0.81 +0.4 4,392,092 + ECD_04123 0.81 -1.0 4,392,211 + +0.2 4,392,300 + -0.1 4,392,300 + +0.6
Or see this region's nucleotide sequence