Strain Fitness in Escherichia coli BL21 around ECD_04120

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04119 and ECD_04120 are separated by 72 nucleotidesECD_04120 and ECD_04121 are separated by 161 nucleotidesECD_04121 and ECD_04122 are separated by 45 nucleotides ECD_04119: ECD_04119 - SopA-central-domain-like hexapeptide repeat protein, at 4,387,079 to 4,388,731 _04119 ECD_04120: ECD_04120 - ornithine carbamoyltransferase 1, at 4,388,804 to 4,389,808 _04120 ECD_04121: ECD_04121 - protein inhibitor of RNase E, at 4,389,970 to 4,390,386 _04121 ECD_04122: ECD_04122 - GNAT family putative N-acetyltransferase, at 4,390,432 to 4,390,935 _04122 Position (kb) 4388 4389 4390Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4388.448 kb on + strand, within ECD_04119at 4388.842 kb on + strandat 4388.842 kb on + strandat 4388.843 kb on - strandat 4388.924 kb on + strand, within ECD_04120at 4388.925 kb on - strand, within ECD_04120at 4388.925 kb on - strand, within ECD_04120at 4388.925 kb on - strand, within ECD_04120at 4389.049 kb on - strand, within ECD_04120at 4389.110 kb on + strand, within ECD_04120at 4389.110 kb on + strand, within ECD_04120at 4389.110 kb on + strand, within ECD_04120at 4389.111 kb on - strand, within ECD_04120at 4389.120 kb on + strand, within ECD_04120at 4389.121 kb on - strand, within ECD_04120at 4389.121 kb on - strand, within ECD_04120at 4389.121 kb on - strand, within ECD_04120at 4389.121 kb on - strand, within ECD_04120at 4389.124 kb on + strand, within ECD_04120at 4389.124 kb on + strand, within ECD_04120at 4389.125 kb on - strand, within ECD_04120at 4389.153 kb on - strand, within ECD_04120at 4389.153 kb on - strand, within ECD_04120at 4389.153 kb on - strand, within ECD_04120at 4389.328 kb on - strand, within ECD_04120at 4389.450 kb on + strand, within ECD_04120at 4389.451 kb on - strand, within ECD_04120at 4389.507 kb on + strand, within ECD_04120at 4389.551 kb on - strand, within ECD_04120at 4389.583 kb on - strand, within ECD_04120at 4389.583 kb on - strand, within ECD_04120at 4389.583 kb on - strand, within ECD_04120at 4389.808 kb on + strandat 4389.808 kb on + strandat 4389.809 kb on - strandat 4389.809 kb on - strandat 4389.809 kb on - strandat 4389.956 kb on - strandat 4389.956 kb on - strandat 4389.956 kb on - strandat 4390.063 kb on + strand, within ECD_04121at 4390.064 kb on - strand, within ECD_04121at 4390.291 kb on + strand, within ECD_04121at 4390.309 kb on + strand, within ECD_04121at 4390.309 kb on + strand, within ECD_04121at 4390.389 kb on - strandat 4390.397 kb on - strandat 4390.490 kb on + strand, within ECD_04122at 4390.497 kb on + strand, within ECD_04122at 4390.498 kb on - strand, within ECD_04122at 4390.696 kb on + strand, within ECD_04122at 4390.752 kb on - strand, within ECD_04122at 4390.771 kb on - strand, within ECD_04122at 4390.772 kb on + strand, within ECD_04122at 4390.772 kb on + strand, within ECD_04122

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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4,388,448 + ECD_04119 0.83 +0.9
4,388,842 + +1.1
4,388,842 + -0.4
4,388,843 - -0.0
4,388,924 + ECD_04120 0.12 -0.1
4,388,925 - ECD_04120 0.12 +0.0
4,388,925 - ECD_04120 0.12 -0.8
4,388,925 - ECD_04120 0.12 +0.6
4,389,049 - ECD_04120 0.24 +0.1
4,389,110 + ECD_04120 0.30 +0.1
4,389,110 + ECD_04120 0.30 +0.7
4,389,110 + ECD_04120 0.30 +2.3
4,389,111 - ECD_04120 0.31 +0.7
4,389,120 + ECD_04120 0.31 +1.1
4,389,121 - ECD_04120 0.32 +0.0
4,389,121 - ECD_04120 0.32 -0.3
4,389,121 - ECD_04120 0.32 +0.1
4,389,121 - ECD_04120 0.32 -0.0
4,389,124 + ECD_04120 0.32 -0.3
4,389,124 + ECD_04120 0.32 -0.3
4,389,125 - ECD_04120 0.32 +0.3
4,389,153 - ECD_04120 0.35 +1.0
4,389,153 - ECD_04120 0.35 +0.7
4,389,153 - ECD_04120 0.35 -0.1
4,389,328 - ECD_04120 0.52 +0.6
4,389,450 + ECD_04120 0.64 +0.1
4,389,451 - ECD_04120 0.64 +0.9
4,389,507 + ECD_04120 0.70 +0.7
4,389,551 - ECD_04120 0.74 +0.5
4,389,583 - ECD_04120 0.78 +0.2
4,389,583 - ECD_04120 0.78 +0.8
4,389,583 - ECD_04120 0.78 +0.4
4,389,808 + -0.1
4,389,808 + -1.1
4,389,809 - +0.1
4,389,809 - +0.9
4,389,809 - -0.8
4,389,956 - +1.6
4,389,956 - -0.6
4,389,956 - -1.9
4,390,063 + ECD_04121 0.22 -1.2
4,390,064 - ECD_04121 0.23 -0.4
4,390,291 + ECD_04121 0.77 -3.0
4,390,309 + ECD_04121 0.81 -2.2
4,390,309 + ECD_04121 0.81 -0.8
4,390,389 - +0.7
4,390,397 - -0.2
4,390,490 + ECD_04122 0.12 -1.0
4,390,497 + ECD_04122 0.13 +1.0
4,390,498 - ECD_04122 0.13 +0.3
4,390,696 + ECD_04122 0.52 +1.1
4,390,752 - ECD_04122 0.63 -1.8
4,390,771 - ECD_04122 0.67 +0.3
4,390,772 + ECD_04122 0.67 +2.0
4,390,772 + ECD_04122 0.67 -0.4

Or see this region's nucleotide sequence