Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04038 and ECD_04039 are separated by 85 nucleotides ECD_04039 and ECD_04040 are separated by 75 nucleotides ECD_04040 and ECD_04041 are separated by 85 nucleotides
ECD_04038: ECD_04038 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase, at 4,305,772 to 4,306,722
_04038
ECD_04039: ECD_04039 - global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication, at 4,306,808 to 4,307,116
_04039
ECD_04040: ECD_04040 - GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator, at 4,307,192 to 4,308,472
_04040
ECD_04041: ECD_04041 - modulator for HflB protease specific for phage lambda cII repressor, at 4,308,558 to 4,309,817
_04041
Position (kb) 4307
4308
4309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4306.710 kb on + strand at 4306.741 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.785 kb on + strand at 4306.791 kb on + strand at 4306.791 kb on + strand at 4306.987 kb on + strand, within ECD_04039 at 4307.023 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.050 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.054 kb on + strand, within ECD_04039 at 4307.065 kb on + strand, within ECD_04039 at 4307.080 kb on + strand, within ECD_04039 at 4307.173 kb on + strand at 4307.177 kb on + strand at 4307.185 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.187 kb on + strand at 4307.240 kb on + strand at 4307.551 kb on + strand, within ECD_04040 at 4307.551 kb on + strand, within ECD_04040 at 4307.806 kb on + strand, within ECD_04040 at 4307.905 kb on + strand, within ECD_04040 at 4307.934 kb on + strand, within ECD_04040 at 4307.949 kb on + strand, within ECD_04040 at 4307.949 kb on + strand, within ECD_04040 at 4307.992 kb on + strand, within ECD_04040 at 4307.992 kb on + strand, within ECD_04040 at 4308.027 kb on + strand, within ECD_04040 at 4308.063 kb on + strand, within ECD_04040 at 4308.295 kb on + strand, within ECD_04040 at 4308.295 kb on + strand, within ECD_04040 at 4308.295 kb on + strand, within ECD_04040 at 4308.295 kb on + strand, within ECD_04040 at 4308.390 kb on + strand at 4308.544 kb on + strand at 4308.544 kb on + strand at 4308.544 kb on + strand at 4309.152 kb on + strand, within ECD_04041 at 4309.368 kb on + strand, within ECD_04041 at 4309.412 kb on + strand, within ECD_04041
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 4,306,710 + -0.7 4,306,741 + -0.1 4,306,785 + -3.2 4,306,785 + -1.8 4,306,785 + -1.0 4,306,785 + -0.8 4,306,791 + -1.8 4,306,791 + -2.2 4,306,987 + ECD_04039 0.58 -0.6 4,307,023 + ECD_04039 0.70 -1.9 4,307,050 + ECD_04039 0.78 -2.8 4,307,050 + ECD_04039 0.78 -1.3 4,307,050 + ECD_04039 0.78 -2.9 4,307,050 + ECD_04039 0.78 -0.2 4,307,054 + ECD_04039 0.80 -2.6 4,307,054 + ECD_04039 0.80 -2.3 4,307,054 + ECD_04039 0.80 -1.3 4,307,054 + ECD_04039 0.80 -1.4 4,307,054 + ECD_04039 0.80 -3.1 4,307,054 + ECD_04039 0.80 +2.1 4,307,065 + ECD_04039 0.83 -0.1 4,307,080 + ECD_04039 0.88 -1.3 4,307,173 + -0.2 4,307,177 + +0.2 4,307,185 + -0.2 4,307,187 + +1.7 4,307,187 + +0.7 4,307,187 + +0.0 4,307,187 + -0.8 4,307,187 + -1.2 4,307,240 + +0.7 4,307,551 + ECD_04040 0.28 +0.1 4,307,551 + ECD_04040 0.28 +2.0 4,307,806 + ECD_04040 0.48 +1.1 4,307,905 + ECD_04040 0.56 +1.3 4,307,934 + ECD_04040 0.58 +1.1 4,307,949 + ECD_04040 0.59 +2.2 4,307,949 + ECD_04040 0.59 -0.5 4,307,992 + ECD_04040 0.62 -0.4 4,307,992 + ECD_04040 0.62 +1.4 4,308,027 + ECD_04040 0.65 +0.4 4,308,063 + ECD_04040 0.68 +0.5 4,308,295 + ECD_04040 0.86 -1.2 4,308,295 + ECD_04040 0.86 +0.4 4,308,295 + ECD_04040 0.86 -0.9 4,308,295 + ECD_04040 0.86 +0.7 4,308,390 + -1.8 4,308,544 + -2.8 4,308,544 + +1.8 4,308,544 + -0.8 4,309,152 + ECD_04041 0.47 +1.0 4,309,368 + ECD_04041 0.64 -0.7 4,309,412 + ECD_04041 0.68 -0.7
Or see this region's nucleotide sequence