Strain Fitness in Escherichia coli BL21 around ECD_03934

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03933 and ECD_03934 are separated by 2 nucleotidesECD_03934 and ECD_03935 are separated by 85 nucleotides ECD_03933: ECD_03933 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 4,182,881 to 4,184,467 _03933 ECD_03934: ECD_03934 - superoxide response regulon transcriptional activator; autoregulator, at 4,184,470 to 4,184,793 _03934 ECD_03935: ECD_03935 - redox-sensitive transcriptional activator of soxS; autorepressor, at 4,184,879 to 4,185,343 _03935 Position (kb) 4184 4185Strain fitness (log2 ratio) -1 0 1at 4183.518 kb on + strand, within ECD_03933at 4183.600 kb on + strand, within ECD_03933at 4183.682 kb on + strand, within ECD_03933at 4183.686 kb on + strand, within ECD_03933at 4183.872 kb on + strand, within ECD_03933at 4183.873 kb on - strand, within ECD_03933at 4183.889 kb on + strand, within ECD_03933at 4183.957 kb on + strand, within ECD_03933at 4183.958 kb on - strand, within ECD_03933at 4184.129 kb on + strand, within ECD_03933at 4184.182 kb on + strand, within ECD_03933at 4184.302 kb on - strand, within ECD_03933at 4184.342 kb on - strandat 4184.370 kb on - strandat 4184.417 kb on - strandat 4184.472 kb on - strandat 4184.549 kb on + strand, within ECD_03934at 4184.550 kb on - strand, within ECD_03934at 4184.550 kb on - strand, within ECD_03934at 4184.614 kb on + strand, within ECD_03934at 4184.794 kb on - strandat 4185.130 kb on + strand, within ECD_03935at 4185.130 kb on + strand, within ECD_03935at 4185.131 kb on - strand, within ECD_03935at 4185.199 kb on + strand, within ECD_03935at 4185.200 kb on - strand, within ECD_03935at 4185.235 kb on + strand, within ECD_03935at 4185.235 kb on + strand, within ECD_03935at 4185.236 kb on - strand, within ECD_03935at 4185.236 kb on - strand, within ECD_03935at 4185.363 kb on - strandat 4185.363 kb on - strandat 4185.393 kb on + strandat 4185.405 kb on - strandat 4185.482 kb on - strandat 4185.487 kb on + strandat 4185.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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4,183,518 + ECD_03933 0.40 -0.6
4,183,600 + ECD_03933 0.45 -0.8
4,183,682 + ECD_03933 0.50 +1.5
4,183,686 + ECD_03933 0.51 +0.8
4,183,872 + ECD_03933 0.62 +1.3
4,183,873 - ECD_03933 0.63 +1.0
4,183,889 + ECD_03933 0.64 +1.4
4,183,957 + ECD_03933 0.68 +0.1
4,183,958 - ECD_03933 0.68 +0.1
4,184,129 + ECD_03933 0.79 +0.0
4,184,182 + ECD_03933 0.82 +1.4
4,184,302 - ECD_03933 0.90 +0.0
4,184,342 - +0.7
4,184,370 - +0.3
4,184,417 - +0.3
4,184,472 - +1.1
4,184,549 + ECD_03934 0.24 +0.1
4,184,550 - ECD_03934 0.25 +0.1
4,184,550 - ECD_03934 0.25 +0.4
4,184,614 + ECD_03934 0.44 +1.0
4,184,794 - -0.2
4,185,130 + ECD_03935 0.54 +0.3
4,185,130 + ECD_03935 0.54 +1.0
4,185,131 - ECD_03935 0.54 +0.1
4,185,199 + ECD_03935 0.69 -0.5
4,185,200 - ECD_03935 0.69 -0.0
4,185,235 + ECD_03935 0.77 +1.4
4,185,235 + ECD_03935 0.77 +1.1
4,185,236 - ECD_03935 0.77 +0.4
4,185,236 - ECD_03935 0.77 -0.1
4,185,363 - +0.5
4,185,363 - +0.5
4,185,393 + +0.5
4,185,405 - +0.6
4,185,482 - +1.3
4,185,487 + -0.2
4,185,750 + -0.4

Or see this region's nucleotide sequence