Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03903 and ECD_03904 are separated by 371 nucleotides ECD_03904 and ECD_03905 are separated by 14 nucleotides
ECD_03903: ECD_03903 - D-xylose transporter, at 4,148,151 to 4,149,626
_03903
ECD_03904: ECD_03904 - maltose transporter subunit, at 4,149,998 to 4,150,888
_03904
ECD_03905: ECD_03905 - maltose transporter subunit, at 4,150,903 to 4,152,447
_03905
Position (kb)
4149
4150
4151 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4149.023 kb on + strand, within ECD_03903 at 4149.179 kb on - strand, within ECD_03903 at 4149.955 kb on + strand at 4149.956 kb on - strand at 4149.956 kb on - strand at 4149.956 kb on - strand at 4149.976 kb on + strand at 4149.977 kb on - strand at 4150.134 kb on + strand, within ECD_03904 at 4150.134 kb on + strand, within ECD_03904 at 4150.135 kb on - strand, within ECD_03904 at 4150.161 kb on + strand, within ECD_03904 at 4150.162 kb on - strand, within ECD_03904 at 4150.162 kb on - strand, within ECD_03904 at 4150.162 kb on - strand, within ECD_03904 at 4150.170 kb on - strand, within ECD_03904 at 4150.235 kb on + strand, within ECD_03904 at 4150.441 kb on - strand, within ECD_03904 at 4150.467 kb on + strand, within ECD_03904 at 4150.467 kb on + strand, within ECD_03904 at 4150.467 kb on + strand, within ECD_03904 at 4150.468 kb on - strand, within ECD_03904 at 4150.468 kb on - strand, within ECD_03904 at 4150.488 kb on - strand, within ECD_03904 at 4150.552 kb on + strand, within ECD_03904 at 4150.647 kb on - strand, within ECD_03904 at 4150.694 kb on - strand, within ECD_03904 at 4150.700 kb on + strand, within ECD_03904 at 4150.700 kb on + strand, within ECD_03904 at 4150.780 kb on + strand, within ECD_03904 at 4150.807 kb on + strand at 4150.844 kb on - strand at 4150.851 kb on - strand at 4151.034 kb on - strand at 4151.039 kb on + strand at 4151.039 kb on + strand at 4151.039 kb on + strand at 4151.039 kb on + strand at 4151.039 kb on + strand at 4151.040 kb on - strand at 4151.040 kb on - strand at 4151.043 kb on + strand at 4151.059 kb on - strand, within ECD_03905 at 4151.139 kb on + strand, within ECD_03905 at 4151.140 kb on - strand, within ECD_03905 at 4151.202 kb on + strand, within ECD_03905 at 4151.249 kb on + strand, within ECD_03905 at 4151.300 kb on + strand, within ECD_03905 at 4151.320 kb on - strand, within ECD_03905 at 4151.333 kb on - strand, within ECD_03905 at 4151.474 kb on + strand, within ECD_03905 at 4151.695 kb on + strand, within ECD_03905 at 4151.738 kb on + strand, within ECD_03905 at 4151.817 kb on - strand, within ECD_03905 at 4151.817 kb on - strand, within ECD_03905
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 4,149,023 + ECD_03903 0.59 -0.2 4,149,179 - ECD_03903 0.70 -1.5 4,149,955 + +0.6 4,149,956 - -0.7 4,149,956 - -0.1 4,149,956 - +0.5 4,149,976 + +0.9 4,149,977 - +0.6 4,150,134 + ECD_03904 0.15 -0.1 4,150,134 + ECD_03904 0.15 +0.7 4,150,135 - ECD_03904 0.15 +1.7 4,150,161 + ECD_03904 0.18 +0.8 4,150,162 - ECD_03904 0.18 +0.1 4,150,162 - ECD_03904 0.18 +0.6 4,150,162 - ECD_03904 0.18 +0.3 4,150,170 - ECD_03904 0.19 +0.5 4,150,235 + ECD_03904 0.27 -0.1 4,150,441 - ECD_03904 0.50 +0.8 4,150,467 + ECD_03904 0.53 +0.5 4,150,467 + ECD_03904 0.53 +0.0 4,150,467 + ECD_03904 0.53 -0.4 4,150,468 - ECD_03904 0.53 +0.7 4,150,468 - ECD_03904 0.53 -0.2 4,150,488 - ECD_03904 0.55 +0.1 4,150,552 + ECD_03904 0.62 +0.2 4,150,647 - ECD_03904 0.73 +0.2 4,150,694 - ECD_03904 0.78 +1.5 4,150,700 + ECD_03904 0.79 +0.7 4,150,700 + ECD_03904 0.79 +0.7 4,150,780 + ECD_03904 0.88 +0.3 4,150,807 + -0.6 4,150,844 - -0.6 4,150,851 - -0.4 4,151,034 - -1.1 4,151,039 + +0.6 4,151,039 + +0.6 4,151,039 + -0.6 4,151,039 + -0.6 4,151,039 + -0.4 4,151,040 - +0.6 4,151,040 - +0.4 4,151,043 + -0.3 4,151,059 - ECD_03905 0.10 -0.1 4,151,139 + ECD_03905 0.15 -0.4 4,151,140 - ECD_03905 0.15 +0.2 4,151,202 + ECD_03905 0.19 +0.8 4,151,249 + ECD_03905 0.22 +0.6 4,151,300 + ECD_03905 0.26 +1.0 4,151,320 - ECD_03905 0.27 +2.9 4,151,333 - ECD_03905 0.28 -0.1 4,151,474 + ECD_03905 0.37 +0.2 4,151,695 + ECD_03905 0.51 -0.2 4,151,738 + ECD_03905 0.54 -0.2 4,151,817 - ECD_03905 0.59 -0.1 4,151,817 - ECD_03905 0.59 +0.8
Or see this region's nucleotide sequence