Strain Fitness in Escherichia coli BL21 around ECD_03904

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03903 and ECD_03904 are separated by 371 nucleotidesECD_03904 and ECD_03905 are separated by 14 nucleotides ECD_03903: ECD_03903 - D-xylose transporter, at 4,148,151 to 4,149,626 _03903 ECD_03904: ECD_03904 - maltose transporter subunit, at 4,149,998 to 4,150,888 _03904 ECD_03905: ECD_03905 - maltose transporter subunit, at 4,150,903 to 4,152,447 _03905 Position (kb) 4149 4150 4151Strain fitness (log2 ratio) -1 0 1 2 3at 4149.023 kb on + strand, within ECD_03903at 4149.179 kb on - strand, within ECD_03903at 4149.955 kb on + strandat 4149.956 kb on - strandat 4149.956 kb on - strandat 4149.956 kb on - strandat 4149.976 kb on + strandat 4149.977 kb on - strandat 4150.134 kb on + strand, within ECD_03904at 4150.134 kb on + strand, within ECD_03904at 4150.135 kb on - strand, within ECD_03904at 4150.161 kb on + strand, within ECD_03904at 4150.162 kb on - strand, within ECD_03904at 4150.162 kb on - strand, within ECD_03904at 4150.162 kb on - strand, within ECD_03904at 4150.170 kb on - strand, within ECD_03904at 4150.235 kb on + strand, within ECD_03904at 4150.441 kb on - strand, within ECD_03904at 4150.467 kb on + strand, within ECD_03904at 4150.467 kb on + strand, within ECD_03904at 4150.467 kb on + strand, within ECD_03904at 4150.468 kb on - strand, within ECD_03904at 4150.468 kb on - strand, within ECD_03904at 4150.488 kb on - strand, within ECD_03904at 4150.552 kb on + strand, within ECD_03904at 4150.647 kb on - strand, within ECD_03904at 4150.694 kb on - strand, within ECD_03904at 4150.700 kb on + strand, within ECD_03904at 4150.700 kb on + strand, within ECD_03904at 4150.780 kb on + strand, within ECD_03904at 4150.807 kb on + strandat 4150.844 kb on - strandat 4150.851 kb on - strandat 4151.034 kb on - strandat 4151.039 kb on + strandat 4151.039 kb on + strandat 4151.039 kb on + strandat 4151.039 kb on + strandat 4151.039 kb on + strandat 4151.040 kb on - strandat 4151.040 kb on - strandat 4151.043 kb on + strandat 4151.059 kb on - strand, within ECD_03905at 4151.139 kb on + strand, within ECD_03905at 4151.140 kb on - strand, within ECD_03905at 4151.202 kb on + strand, within ECD_03905at 4151.249 kb on + strand, within ECD_03905at 4151.300 kb on + strand, within ECD_03905at 4151.320 kb on - strand, within ECD_03905at 4151.333 kb on - strand, within ECD_03905at 4151.474 kb on + strand, within ECD_03905at 4151.695 kb on + strand, within ECD_03905at 4151.738 kb on + strand, within ECD_03905at 4151.817 kb on - strand, within ECD_03905at 4151.817 kb on - strand, within ECD_03905

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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4,149,023 + ECD_03903 0.59 -0.2
4,149,179 - ECD_03903 0.70 -1.5
4,149,955 + +0.6
4,149,956 - -0.7
4,149,956 - -0.1
4,149,956 - +0.5
4,149,976 + +0.9
4,149,977 - +0.6
4,150,134 + ECD_03904 0.15 -0.1
4,150,134 + ECD_03904 0.15 +0.7
4,150,135 - ECD_03904 0.15 +1.7
4,150,161 + ECD_03904 0.18 +0.8
4,150,162 - ECD_03904 0.18 +0.1
4,150,162 - ECD_03904 0.18 +0.6
4,150,162 - ECD_03904 0.18 +0.3
4,150,170 - ECD_03904 0.19 +0.5
4,150,235 + ECD_03904 0.27 -0.1
4,150,441 - ECD_03904 0.50 +0.8
4,150,467 + ECD_03904 0.53 +0.5
4,150,467 + ECD_03904 0.53 +0.0
4,150,467 + ECD_03904 0.53 -0.4
4,150,468 - ECD_03904 0.53 +0.7
4,150,468 - ECD_03904 0.53 -0.2
4,150,488 - ECD_03904 0.55 +0.1
4,150,552 + ECD_03904 0.62 +0.2
4,150,647 - ECD_03904 0.73 +0.2
4,150,694 - ECD_03904 0.78 +1.5
4,150,700 + ECD_03904 0.79 +0.7
4,150,700 + ECD_03904 0.79 +0.7
4,150,780 + ECD_03904 0.88 +0.3
4,150,807 + -0.6
4,150,844 - -0.6
4,150,851 - -0.4
4,151,034 - -1.1
4,151,039 + +0.6
4,151,039 + +0.6
4,151,039 + -0.6
4,151,039 + -0.6
4,151,039 + -0.4
4,151,040 - +0.6
4,151,040 - +0.4
4,151,043 + -0.3
4,151,059 - ECD_03905 0.10 -0.1
4,151,139 + ECD_03905 0.15 -0.4
4,151,140 - ECD_03905 0.15 +0.2
4,151,202 + ECD_03905 0.19 +0.8
4,151,249 + ECD_03905 0.22 +0.6
4,151,300 + ECD_03905 0.26 +1.0
4,151,320 - ECD_03905 0.27 +2.9
4,151,333 - ECD_03905 0.28 -0.1
4,151,474 + ECD_03905 0.37 +0.2
4,151,695 + ECD_03905 0.51 -0.2
4,151,738 + ECD_03905 0.54 -0.2
4,151,817 - ECD_03905 0.59 -0.1
4,151,817 - ECD_03905 0.59 +0.8

Or see this region's nucleotide sequence