Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03846 and ECD_03847 overlap by 18 nucleotides ECD_03847 and ECD_03848 are separated by 276 nucleotides ECD_03848 and ECD_03849 overlap by 1 nucleotides
ECD_03846: ECD_03846 - oxidative and nitrosative stress transcriptional regulator, at 4,066,791 to 4,067,708
_03846
ECD_03847: ECD_03847 - pyridine nucleotide transhydrogenase, soluble, at 4,067,691 to 4,069,091
_03847
ECD_03848: ECD_03848 - transcriptional repressor of fabA and fabB, at 4,069,368 to 4,070,072
_03848
ECD_03849: ECD_03849 - DUF1422 family inner membrane protein, at 4,070,072 to 4,070,431
_03849
Position (kb)
4067
4068
4069
4070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4066.707 kb on - strand at 4066.745 kb on + strand at 4066.751 kb on - strand at 4066.767 kb on + strand at 4066.796 kb on + strand at 4066.997 kb on + strand, within ECD_03846 at 4067.114 kb on + strand, within ECD_03846 at 4067.114 kb on + strand, within ECD_03846 at 4067.114 kb on + strand, within ECD_03846 at 4067.114 kb on + strand, within ECD_03846 at 4067.114 kb on + strand, within ECD_03846 at 4067.114 kb on + strand, within ECD_03846 at 4067.115 kb on - strand, within ECD_03846 at 4067.117 kb on + strand, within ECD_03846 at 4067.117 kb on + strand, within ECD_03846 at 4067.158 kb on - strand, within ECD_03846 at 4067.186 kb on - strand, within ECD_03846 at 4067.294 kb on + strand, within ECD_03846 at 4067.294 kb on + strand, within ECD_03846 at 4067.295 kb on - strand, within ECD_03846 at 4067.298 kb on + strand, within ECD_03846 at 4067.298 kb on + strand, within ECD_03846 at 4067.298 kb on + strand, within ECD_03846 at 4067.299 kb on - strand, within ECD_03846 at 4067.299 kb on - strand, within ECD_03846 at 4067.492 kb on + strand, within ECD_03846 at 4067.556 kb on + strand, within ECD_03846 at 4067.557 kb on - strand, within ECD_03846 at 4067.604 kb on + strand, within ECD_03846 at 4067.635 kb on - strand at 4067.756 kb on + strand at 4067.756 kb on + strand at 4067.756 kb on + strand at 4067.757 kb on - strand at 4067.757 kb on - strand at 4067.757 kb on - strand at 4067.757 kb on - strand at 4068.041 kb on - strand, within ECD_03847 at 4068.056 kb on + strand, within ECD_03847 at 4068.196 kb on + strand, within ECD_03847 at 4068.197 kb on - strand, within ECD_03847 at 4068.197 kb on - strand, within ECD_03847 at 4068.197 kb on - strand, within ECD_03847 at 4068.418 kb on + strand, within ECD_03847 at 4068.547 kb on + strand, within ECD_03847 at 4068.548 kb on - strand, within ECD_03847 at 4068.548 kb on - strand, within ECD_03847 at 4068.551 kb on + strand, within ECD_03847 at 4068.551 kb on + strand, within ECD_03847 at 4068.552 kb on - strand, within ECD_03847 at 4068.556 kb on - strand, within ECD_03847 at 4068.556 kb on - strand, within ECD_03847 at 4068.556 kb on - strand, within ECD_03847 at 4068.556 kb on - strand, within ECD_03847 at 4068.601 kb on + strand, within ECD_03847 at 4068.722 kb on + strand, within ECD_03847 at 4068.722 kb on + strand, within ECD_03847 at 4068.723 kb on - strand, within ECD_03847 at 4068.723 kb on - strand, within ECD_03847 at 4068.723 kb on - strand, within ECD_03847 at 4068.723 kb on - strand, within ECD_03847 at 4068.723 kb on - strand, within ECD_03847 at 4068.756 kb on + strand, within ECD_03847 at 4068.757 kb on - strand, within ECD_03847 at 4068.770 kb on + strand, within ECD_03847 at 4068.778 kb on + strand, within ECD_03847 at 4068.778 kb on + strand, within ECD_03847 at 4068.779 kb on - strand, within ECD_03847 at 4069.057 kb on - strand at 4069.057 kb on - strand at 4069.059 kb on + strand at 4069.060 kb on - strand at 4069.060 kb on - strand at 4069.060 kb on - strand at 4069.060 kb on - strand at 4069.060 kb on - strand at 4069.060 kb on - strand at 4069.073 kb on - strand at 4069.101 kb on + strand at 4069.117 kb on + strand at 4069.118 kb on - strand at 4069.118 kb on - strand at 4069.175 kb on - strand at 4069.183 kb on - strand at 4069.185 kb on - strand at 4069.216 kb on + strand at 4069.290 kb on + strand at 4069.320 kb on + strand at 4069.321 kb on - strand at 4069.321 kb on - strand at 4069.321 kb on - strand at 4069.321 kb on - strand at 4069.321 kb on - strand at 4069.327 kb on + strand at 4069.368 kb on - strand at 4069.384 kb on - strand at 4069.385 kb on + strand at 4069.385 kb on + strand at 4069.385 kb on + strand at 4069.397 kb on + strand at 4069.432 kb on + strand at 4069.432 kb on + strand at 4069.433 kb on - strand at 4069.492 kb on + strand, within ECD_03848 at 4069.492 kb on + strand, within ECD_03848 at 4069.727 kb on + strand, within ECD_03848 at 4069.727 kb on + strand, within ECD_03848 at 4069.728 kb on - strand, within ECD_03848 at 4069.728 kb on - strand, within ECD_03848 at 4069.750 kb on + strand, within ECD_03848 at 4069.751 kb on - strand, within ECD_03848 at 4069.836 kb on + strand, within ECD_03848 at 4069.960 kb on + strand, within ECD_03848 at 4069.961 kb on - strand, within ECD_03848 at 4069.961 kb on - strand, within ECD_03848 at 4070.007 kb on + strand at 4070.007 kb on + strand at 4070.007 kb on + strand at 4070.007 kb on + strand at 4070.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 4,066,707 - +0.0 4,066,745 + +0.4 4,066,751 - -1.5 4,066,767 + +0.5 4,066,796 + +0.2 4,066,997 + ECD_03846 0.22 -0.3 4,067,114 + ECD_03846 0.35 +0.4 4,067,114 + ECD_03846 0.35 -0.3 4,067,114 + ECD_03846 0.35 -0.7 4,067,114 + ECD_03846 0.35 -0.5 4,067,114 + ECD_03846 0.35 +0.5 4,067,114 + ECD_03846 0.35 -0.6 4,067,115 - ECD_03846 0.35 -0.3 4,067,117 + ECD_03846 0.36 -0.7 4,067,117 + ECD_03846 0.36 -0.1 4,067,158 - ECD_03846 0.40 -0.9 4,067,186 - ECD_03846 0.43 -0.4 4,067,294 + ECD_03846 0.55 -0.4 4,067,294 + ECD_03846 0.55 -0.7 4,067,295 - ECD_03846 0.55 -0.6 4,067,298 + ECD_03846 0.55 +0.1 4,067,298 + ECD_03846 0.55 -0.6 4,067,298 + ECD_03846 0.55 +0.4 4,067,299 - ECD_03846 0.55 +0.7 4,067,299 - ECD_03846 0.55 -0.0 4,067,492 + ECD_03846 0.76 -0.2 4,067,556 + ECD_03846 0.83 -0.9 4,067,557 - ECD_03846 0.83 -0.0 4,067,604 + ECD_03846 0.89 +0.2 4,067,635 - +1.4 4,067,756 + -2.1 4,067,756 + -1.1 4,067,756 + -1.4 4,067,757 - -1.2 4,067,757 - -1.0 4,067,757 - -1.6 4,067,757 - -1.1 4,068,041 - ECD_03847 0.25 -2.9 4,068,056 + ECD_03847 0.26 +1.3 4,068,196 + ECD_03847 0.36 +1.2 4,068,197 - ECD_03847 0.36 -0.9 4,068,197 - ECD_03847 0.36 +0.3 4,068,197 - ECD_03847 0.36 -1.7 4,068,418 + ECD_03847 0.52 -1.1 4,068,547 + ECD_03847 0.61 -0.8 4,068,548 - ECD_03847 0.61 +0.8 4,068,548 - ECD_03847 0.61 -0.7 4,068,551 + ECD_03847 0.61 -1.8 4,068,551 + ECD_03847 0.61 +3.2 4,068,552 - ECD_03847 0.61 +0.1 4,068,556 - ECD_03847 0.62 +0.1 4,068,556 - ECD_03847 0.62 -0.5 4,068,556 - ECD_03847 0.62 -1.2 4,068,556 - ECD_03847 0.62 -1.2 4,068,601 + ECD_03847 0.65 +0.3 4,068,722 + ECD_03847 0.74 -0.5 4,068,722 + ECD_03847 0.74 -1.0 4,068,723 - ECD_03847 0.74 -1.2 4,068,723 - ECD_03847 0.74 +0.5 4,068,723 - ECD_03847 0.74 -0.3 4,068,723 - ECD_03847 0.74 +0.0 4,068,723 - ECD_03847 0.74 -0.2 4,068,756 + ECD_03847 0.76 -0.2 4,068,757 - ECD_03847 0.76 -1.2 4,068,770 + ECD_03847 0.77 -1.4 4,068,778 + ECD_03847 0.78 -0.1 4,068,778 + ECD_03847 0.78 -1.9 4,068,779 - ECD_03847 0.78 -0.2 4,069,057 - -0.0 4,069,057 - -1.2 4,069,059 + -1.1 4,069,060 - +0.1 4,069,060 - +1.0 4,069,060 - +0.1 4,069,060 - -0.7 4,069,060 - -0.2 4,069,060 - -2.0 4,069,073 - -2.8 4,069,101 + +0.6 4,069,117 + +0.9 4,069,118 - -0.1 4,069,118 - -0.8 4,069,175 - +0.7 4,069,183 - -0.1 4,069,185 - -0.9 4,069,216 + +1.6 4,069,290 + +0.7 4,069,320 + +0.9 4,069,321 - -0.5 4,069,321 - -0.1 4,069,321 - -0.2 4,069,321 - +0.3 4,069,321 - +0.2 4,069,327 + +0.2 4,069,368 - -1.2 4,069,384 - -1.3 4,069,385 + +0.1 4,069,385 + +0.5 4,069,385 + -0.3 4,069,397 + +0.1 4,069,432 + -1.1 4,069,432 + -1.6 4,069,433 - -1.0 4,069,492 + ECD_03848 0.18 -1.2 4,069,492 + ECD_03848 0.18 -0.2 4,069,727 + ECD_03848 0.51 -1.7 4,069,727 + ECD_03848 0.51 -1.0 4,069,728 - ECD_03848 0.51 -2.0 4,069,728 - ECD_03848 0.51 -0.1 4,069,750 + ECD_03848 0.54 -2.4 4,069,751 - ECD_03848 0.54 -1.2 4,069,836 + ECD_03848 0.66 -1.5 4,069,960 + ECD_03848 0.84 -1.0 4,069,961 - ECD_03848 0.84 -1.5 4,069,961 - ECD_03848 0.84 -1.1 4,070,007 + -3.1 4,070,007 + -0.9 4,070,007 + -1.1 4,070,007 + -2.2 4,070,008 - -0.7
Or see this region's nucleotide sequence