Strain Fitness in Escherichia coli BL21 around ECD_03825

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03823 and ECD_03824 are separated by 183 nucleotidesECD_03824 and ECD_03825 are separated by 276 nucleotidesECD_03825 and ECD_03826 are separated by 2 nucleotides ECD_03823: ECD_03823 - putative lipid binding hydrolase, DUF830 family protein, at 4,035,833 to 4,036,441 _03823 ECD_03824: ECD_03824 - transcriptional repressor, S-adenosylmethionine-binding, at 4,036,625 to 4,036,942 _03824 ECD_03825: ECD_03825 - cystathionine gamma-synthase, PLP-dependent, at 4,037,219 to 4,038,379 _03825 ECD_03826: ECD_03826 - Bifunctional aspartokinase/homoserine dehydrogenase 2, at 4,038,382 to 4,040,814 _03826 Position (kb) 4037 4038 4039Strain fitness (log2 ratio) -2 -1 0 1at 4036.231 kb on - strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.301 kb on - strand, within ECD_03823at 4036.301 kb on - strand, within ECD_03823at 4036.333 kb on + strand, within ECD_03823at 4036.333 kb on + strand, within ECD_03823at 4036.400 kb on + strandat 4036.441 kb on + strandat 4036.441 kb on + strandat 4036.442 kb on - strandat 4036.442 kb on - strandat 4036.442 kb on - strandat 4036.445 kb on + strandat 4036.445 kb on + strandat 4036.446 kb on - strandat 4036.457 kb on + strandat 4036.457 kb on + strandat 4036.458 kb on - strandat 4036.458 kb on - strandat 4036.459 kb on + strandat 4036.460 kb on - strandat 4036.569 kb on - strandat 4036.627 kb on - strandat 4036.629 kb on + strandat 4036.629 kb on + strandat 4036.630 kb on - strandat 4037.020 kb on - strandat 4037.020 kb on - strandat 4037.081 kb on - strandat 4037.081 kb on - strandat 4037.083 kb on - strandat 4037.095 kb on + strandat 4037.095 kb on + strandat 4037.096 kb on - strandat 4037.118 kb on - strandat 4037.171 kb on - strandat 4037.227 kb on + strandat 4037.252 kb on - strandat 4037.276 kb on + strandat 4037.276 kb on + strandat 4037.277 kb on - strandat 4037.315 kb on + strandat 4037.316 kb on - strandat 4037.316 kb on - strandat 4037.332 kb on + strandat 4037.332 kb on + strandat 4037.527 kb on + strand, within ECD_03825at 4037.646 kb on + strand, within ECD_03825at 4037.647 kb on - strand, within ECD_03825at 4037.659 kb on + strand, within ECD_03825at 4037.738 kb on - strand, within ECD_03825at 4037.748 kb on + strand, within ECD_03825at 4037.761 kb on - strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.779 kb on - strand, within ECD_03825at 4037.813 kb on + strand, within ECD_03825at 4037.814 kb on - strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.836 kb on - strand, within ECD_03825at 4037.857 kb on + strand, within ECD_03825at 4037.858 kb on - strand, within ECD_03825at 4037.858 kb on - strand, within ECD_03825at 4037.933 kb on + strand, within ECD_03825at 4037.934 kb on - strand, within ECD_03825at 4037.934 kb on - strand, within ECD_03825at 4037.943 kb on + strand, within ECD_03825at 4037.943 kb on + strand, within ECD_03825at 4037.944 kb on - strand, within ECD_03825at 4038.012 kb on - strand, within ECD_03825at 4038.044 kb on + strand, within ECD_03825at 4038.044 kb on + strand, within ECD_03825at 4038.045 kb on - strand, within ECD_03825at 4038.045 kb on - strand, within ECD_03825at 4038.216 kb on + strand, within ECD_03825at 4038.301 kb on + strandat 4038.334 kb on - strandat 4038.494 kb on - strandat 4038.569 kb on + strandat 4038.729 kb on + strand, within ECD_03826at 4038.730 kb on - strand, within ECD_03826at 4038.800 kb on + strand, within ECD_03826at 4038.801 kb on - strand, within ECD_03826at 4038.804 kb on + strand, within ECD_03826at 4038.804 kb on + strand, within ECD_03826at 4038.805 kb on - strand, within ECD_03826at 4038.805 kb on - strand, within ECD_03826at 4038.960 kb on + strand, within ECD_03826at 4038.961 kb on - strand, within ECD_03826at 4038.961 kb on - strand, within ECD_03826at 4038.961 kb on - strand, within ECD_03826at 4039.085 kb on + strand, within ECD_03826at 4039.087 kb on + strand, within ECD_03826at 4039.087 kb on + strand, within ECD_03826at 4039.087 kb on + strand, within ECD_03826at 4039.088 kb on - strand, within ECD_03826at 4039.088 kb on - strand, within ECD_03826at 4039.194 kb on + strand, within ECD_03826at 4039.199 kb on + strand, within ECD_03826at 4039.200 kb on - strand, within ECD_03826at 4039.242 kb on + strand, within ECD_03826at 4039.242 kb on + strand, within ECD_03826at 4039.308 kb on + strand, within ECD_03826at 4039.309 kb on - strand, within ECD_03826at 4039.309 kb on - strand, within ECD_03826

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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4,036,231 - ECD_03823 0.65 +0.3
4,036,277 + ECD_03823 0.73 -0.6
4,036,277 + ECD_03823 0.73 +0.2
4,036,277 + ECD_03823 0.73 +1.1
4,036,301 - ECD_03823 0.77 +0.4
4,036,301 - ECD_03823 0.77 -1.4
4,036,333 + ECD_03823 0.82 -0.7
4,036,333 + ECD_03823 0.82 +0.4
4,036,400 + +0.5
4,036,441 + -1.7
4,036,441 + +0.4
4,036,442 - +0.2
4,036,442 - +0.0
4,036,442 - +0.4
4,036,445 + +0.3
4,036,445 + -1.8
4,036,446 - +0.3
4,036,457 + +0.2
4,036,457 + +0.0
4,036,458 - +1.1
4,036,458 - -0.9
4,036,459 + +0.0
4,036,460 - -0.8
4,036,569 - -1.7
4,036,627 - -0.2
4,036,629 + +0.5
4,036,629 + +0.4
4,036,630 - +0.9
4,037,020 - -0.3
4,037,020 - +0.4
4,037,081 - -1.1
4,037,081 - +0.9
4,037,083 - +0.4
4,037,095 + -0.5
4,037,095 + +1.0
4,037,096 - -0.5
4,037,118 - +0.7
4,037,171 - +0.5
4,037,227 + -0.0
4,037,252 - -1.0
4,037,276 + +0.8
4,037,276 + +0.3
4,037,277 - +0.2
4,037,315 + +0.7
4,037,316 - +1.6
4,037,316 - +0.1
4,037,332 + -0.2
4,037,332 + +0.1
4,037,527 + ECD_03825 0.27 -0.2
4,037,646 + ECD_03825 0.37 -1.5
4,037,647 - ECD_03825 0.37 +0.9
4,037,659 + ECD_03825 0.38 -1.1
4,037,738 - ECD_03825 0.45 +0.4
4,037,748 + ECD_03825 0.46 -2.0
4,037,761 - ECD_03825 0.47 +0.4
4,037,778 + ECD_03825 0.48 -0.1
4,037,778 + ECD_03825 0.48 -0.9
4,037,778 + ECD_03825 0.48 -0.3
4,037,779 - ECD_03825 0.48 -0.6
4,037,813 + ECD_03825 0.51 -1.0
4,037,814 - ECD_03825 0.51 -0.5
4,037,835 + ECD_03825 0.53 -0.3
4,037,835 + ECD_03825 0.53 +1.2
4,037,835 + ECD_03825 0.53 +0.4
4,037,836 - ECD_03825 0.53 -0.4
4,037,857 + ECD_03825 0.55 +0.5
4,037,858 - ECD_03825 0.55 +1.4
4,037,858 - ECD_03825 0.55 -1.0
4,037,933 + ECD_03825 0.61 +0.4
4,037,934 - ECD_03825 0.62 -1.4
4,037,934 - ECD_03825 0.62 -2.2
4,037,943 + ECD_03825 0.62 -0.6
4,037,943 + ECD_03825 0.62 -0.5
4,037,944 - ECD_03825 0.62 -0.4
4,038,012 - ECD_03825 0.68 +0.5
4,038,044 + ECD_03825 0.71 -0.1
4,038,044 + ECD_03825 0.71 -0.0
4,038,045 - ECD_03825 0.71 -0.2
4,038,045 - ECD_03825 0.71 -0.0
4,038,216 + ECD_03825 0.86 +1.3
4,038,301 + +0.1
4,038,334 - -0.1
4,038,494 - -0.6
4,038,569 + +1.0
4,038,729 + ECD_03826 0.14 +1.2
4,038,730 - ECD_03826 0.14 +0.4
4,038,800 + ECD_03826 0.17 +1.2
4,038,801 - ECD_03826 0.17 +0.4
4,038,804 + ECD_03826 0.17 +0.1
4,038,804 + ECD_03826 0.17 -0.4
4,038,805 - ECD_03826 0.17 -0.0
4,038,805 - ECD_03826 0.17 +0.0
4,038,960 + ECD_03826 0.24 -0.1
4,038,961 - ECD_03826 0.24 +0.8
4,038,961 - ECD_03826 0.24 -0.6
4,038,961 - ECD_03826 0.24 +0.6
4,039,085 + ECD_03826 0.29 -0.8
4,039,087 + ECD_03826 0.29 +1.3
4,039,087 + ECD_03826 0.29 +0.6
4,039,087 + ECD_03826 0.29 -0.9
4,039,088 - ECD_03826 0.29 -0.6
4,039,088 - ECD_03826 0.29 +0.3
4,039,194 + ECD_03826 0.33 +0.5
4,039,199 + ECD_03826 0.34 +0.5
4,039,200 - ECD_03826 0.34 +0.2
4,039,242 + ECD_03826 0.35 +0.5
4,039,242 + ECD_03826 0.35 -1.7
4,039,308 + ECD_03826 0.38 -0.0
4,039,309 - ECD_03826 0.38 +0.5
4,039,309 - ECD_03826 0.38 +0.3

Or see this region's nucleotide sequence