Strain Fitness in Escherichia coli BL21 around ECD_03809

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03806 and ECD_03807 are separated by 211 nucleotidesECD_03807 and ECD_03808 are separated by 26 nucleotidesECD_03808 and ECD_03809 are separated by 4 nucleotidesECD_03809 and ECD_03810 are separated by 96 nucleotides ECD_03806: ECD_03806 - DUF805 family putative inner membrane protein, at 4,020,237 to 4,020,677 _03806 ECD_03807: ECD_03807 - UPF0381 family protein, at 4,020,889 to 4,021,188 _03807 ECD_03808: ECD_03808 - stress-induced protein, at 4,021,215 to 4,021,643 _03808 ECD_03809: ECD_03809 - ferredoxin-NADP reductase; flavodoxin reductase, at 4,021,648 to 4,022,394 _03809 ECD_03810: ECD_03810 - fructose 1,6-bisphosphatase II, at 4,022,491 to 4,023,501 _03810 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4020.694 kb on + strandat 4020.719 kb on + strandat 4020.811 kb on + strandat 4020.812 kb on - strandat 4020.875 kb on + strandat 4020.875 kb on + strandat 4020.875 kb on + strandat 4020.876 kb on - strandat 4020.888 kb on + strandat 4020.902 kb on + strandat 4020.915 kb on + strandat 4020.919 kb on - strand, within ECD_03807at 4020.966 kb on + strand, within ECD_03807at 4020.966 kb on + strand, within ECD_03807at 4020.967 kb on - strand, within ECD_03807at 4021.081 kb on + strand, within ECD_03807at 4021.082 kb on - strand, within ECD_03807at 4021.084 kb on - strand, within ECD_03807at 4021.156 kb on - strand, within ECD_03807at 4021.156 kb on - strand, within ECD_03807at 4021.166 kb on + strandat 4021.210 kb on + strandat 4021.210 kb on + strandat 4021.210 kb on + strandat 4021.211 kb on - strandat 4021.221 kb on + strandat 4021.221 kb on + strandat 4021.222 kb on - strandat 4021.222 kb on - strandat 4021.223 kb on + strandat 4021.277 kb on + strand, within ECD_03808at 4021.322 kb on - strand, within ECD_03808at 4021.329 kb on - strand, within ECD_03808at 4021.342 kb on + strand, within ECD_03808at 4021.385 kb on + strand, within ECD_03808at 4021.386 kb on - strand, within ECD_03808at 4021.425 kb on + strand, within ECD_03808at 4021.426 kb on - strand, within ECD_03808at 4021.428 kb on - strand, within ECD_03808at 4021.428 kb on - strand, within ECD_03808at 4021.560 kb on - strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.637 kb on + strandat 4021.642 kb on - strandat 4021.656 kb on - strandat 4021.691 kb on - strandat 4021.734 kb on + strand, within ECD_03809at 4021.734 kb on + strand, within ECD_03809at 4021.785 kb on + strand, within ECD_03809at 4021.943 kb on + strand, within ECD_03809at 4021.948 kb on + strand, within ECD_03809at 4021.948 kb on + strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.962 kb on - strand, within ECD_03809at 4022.002 kb on + strand, within ECD_03809at 4022.014 kb on + strand, within ECD_03809at 4022.015 kb on - strand, within ECD_03809at 4022.033 kb on + strand, within ECD_03809at 4022.034 kb on - strand, within ECD_03809at 4022.034 kb on - strand, within ECD_03809at 4022.050 kb on - strand, within ECD_03809at 4022.069 kb on - strand, within ECD_03809at 4022.069 kb on - strand, within ECD_03809at 4022.087 kb on - strand, within ECD_03809at 4022.122 kb on - strand, within ECD_03809at 4022.171 kb on - strand, within ECD_03809at 4022.171 kb on - strand, within ECD_03809at 4022.230 kb on - strand, within ECD_03809at 4022.230 kb on - strand, within ECD_03809at 4022.230 kb on - strand, within ECD_03809at 4022.234 kb on + strand, within ECD_03809at 4022.234 kb on + strand, within ECD_03809at 4022.235 kb on - strand, within ECD_03809at 4022.235 kb on - strand, within ECD_03809at 4022.235 kb on - strand, within ECD_03809at 4022.240 kb on + strand, within ECD_03809at 4022.240 kb on + strand, within ECD_03809at 4022.335 kb on - strandat 4022.364 kb on + strandat 4022.424 kb on + strandat 4022.425 kb on - strandat 4022.534 kb on + strandat 4022.534 kb on + strandat 4022.534 kb on + strandat 4022.534 kb on + strandat 4022.646 kb on + strand, within ECD_03810at 4022.704 kb on + strand, within ECD_03810at 4022.705 kb on - strand, within ECD_03810at 4022.705 kb on - strand, within ECD_03810at 4022.705 kb on - strand, within ECD_03810at 4022.770 kb on - strand, within ECD_03810at 4022.830 kb on + strand, within ECD_03810at 4022.830 kb on + strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.886 kb on - strand, within ECD_03810at 4022.913 kb on + strand, within ECD_03810at 4022.953 kb on - strand, within ECD_03810at 4022.959 kb on + strand, within ECD_03810at 4022.960 kb on - strand, within ECD_03810at 4022.965 kb on + strand, within ECD_03810at 4023.012 kb on + strand, within ECD_03810at 4023.144 kb on + strand, within ECD_03810at 4023.145 kb on - strand, within ECD_03810at 4023.145 kb on - strand, within ECD_03810at 4023.145 kb on - strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.150 kb on + strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.258 kb on + strand, within ECD_03810at 4023.258 kb on + strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.263 kb on - strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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4,020,694 + +0.1
4,020,719 + -0.4
4,020,811 + -0.0
4,020,812 - +0.8
4,020,875 + +0.7
4,020,875 + -0.4
4,020,875 + -0.7
4,020,876 - -0.5
4,020,888 + -1.0
4,020,902 + -0.3
4,020,915 + +0.3
4,020,919 - ECD_03807 0.10 +0.5
4,020,966 + ECD_03807 0.26 +0.2
4,020,966 + ECD_03807 0.26 -1.4
4,020,967 - ECD_03807 0.26 +0.8
4,021,081 + ECD_03807 0.64 +0.1
4,021,082 - ECD_03807 0.64 -0.7
4,021,084 - ECD_03807 0.65 +1.3
4,021,156 - ECD_03807 0.89 +0.2
4,021,156 - ECD_03807 0.89 +0.2
4,021,166 + +0.8
4,021,210 + -1.0
4,021,210 + +0.3
4,021,210 + +0.4
4,021,211 - +0.6
4,021,221 + +0.0
4,021,221 + -0.0
4,021,222 - +0.1
4,021,222 - +0.4
4,021,223 + -0.4
4,021,277 + ECD_03808 0.14 +0.4
4,021,322 - ECD_03808 0.25 -0.3
4,021,329 - ECD_03808 0.27 +0.4
4,021,342 + ECD_03808 0.30 -0.7
4,021,385 + ECD_03808 0.40 +0.4
4,021,386 - ECD_03808 0.40 -0.2
4,021,425 + ECD_03808 0.49 -0.2
4,021,426 - ECD_03808 0.49 +1.1
4,021,428 - ECD_03808 0.50 +0.2
4,021,428 - ECD_03808 0.50 +0.2
4,021,560 - ECD_03808 0.80 -1.2
4,021,598 + ECD_03808 0.89 -0.7
4,021,598 + ECD_03808 0.89 +0.8
4,021,598 + ECD_03808 0.89 +0.1
4,021,637 + -0.7
4,021,642 - +0.5
4,021,656 - +0.3
4,021,691 - +0.5
4,021,734 + ECD_03809 0.12 +0.2
4,021,734 + ECD_03809 0.12 +0.8
4,021,785 + ECD_03809 0.18 +3.7
4,021,943 + ECD_03809 0.39 +0.6
4,021,948 + ECD_03809 0.40 -0.2
4,021,948 + ECD_03809 0.40 -0.4
4,021,949 - ECD_03809 0.40 -0.2
4,021,949 - ECD_03809 0.40 +0.1
4,021,949 - ECD_03809 0.40 -0.7
4,021,962 - ECD_03809 0.42 -0.1
4,022,002 + ECD_03809 0.47 +0.8
4,022,014 + ECD_03809 0.49 +0.4
4,022,015 - ECD_03809 0.49 +0.4
4,022,033 + ECD_03809 0.52 +0.7
4,022,034 - ECD_03809 0.52 -0.5
4,022,034 - ECD_03809 0.52 +0.3
4,022,050 - ECD_03809 0.54 +0.3
4,022,069 - ECD_03809 0.56 +1.7
4,022,069 - ECD_03809 0.56 +0.4
4,022,087 - ECD_03809 0.59 +0.2
4,022,122 - ECD_03809 0.63 +0.8
4,022,171 - ECD_03809 0.70 +1.0
4,022,171 - ECD_03809 0.70 +1.4
4,022,230 - ECD_03809 0.78 -1.0
4,022,230 - ECD_03809 0.78 +1.7
4,022,230 - ECD_03809 0.78 -0.3
4,022,234 + ECD_03809 0.78 -0.9
4,022,234 + ECD_03809 0.78 +0.2
4,022,235 - ECD_03809 0.79 +0.2
4,022,235 - ECD_03809 0.79 +1.0
4,022,235 - ECD_03809 0.79 -1.0
4,022,240 + ECD_03809 0.79 -0.9
4,022,240 + ECD_03809 0.79 -0.2
4,022,335 - +1.3
4,022,364 + +0.3
4,022,424 + -0.2
4,022,425 - -0.8
4,022,534 + +0.1
4,022,534 + +0.7
4,022,534 + +1.6
4,022,534 + -0.1
4,022,646 + ECD_03810 0.15 +0.5
4,022,704 + ECD_03810 0.21 -0.3
4,022,705 - ECD_03810 0.21 +1.0
4,022,705 - ECD_03810 0.21 -0.0
4,022,705 - ECD_03810 0.21 +0.0
4,022,770 - ECD_03810 0.28 -0.2
4,022,830 + ECD_03810 0.34 -0.1
4,022,830 + ECD_03810 0.34 +0.8
4,022,831 - ECD_03810 0.34 +0.4
4,022,831 - ECD_03810 0.34 -0.4
4,022,831 - ECD_03810 0.34 +0.1
4,022,831 - ECD_03810 0.34 +0.3
4,022,831 - ECD_03810 0.34 -0.1
4,022,886 - ECD_03810 0.39 -1.1
4,022,913 + ECD_03810 0.42 -0.1
4,022,953 - ECD_03810 0.46 -1.6
4,022,959 + ECD_03810 0.46 +1.2
4,022,960 - ECD_03810 0.46 -3.2
4,022,965 + ECD_03810 0.47 +0.5
4,023,012 + ECD_03810 0.52 -0.4
4,023,144 + ECD_03810 0.65 -0.2
4,023,145 - ECD_03810 0.65 +0.5
4,023,145 - ECD_03810 0.65 -2.4
4,023,145 - ECD_03810 0.65 +0.7
4,023,146 + ECD_03810 0.65 +0.1
4,023,146 + ECD_03810 0.65 -0.2
4,023,146 + ECD_03810 0.65 -0.4
4,023,146 + ECD_03810 0.65 +0.9
4,023,146 + ECD_03810 0.65 +0.4
4,023,146 + ECD_03810 0.65 +1.5
4,023,146 + ECD_03810 0.65 +0.6
4,023,146 + ECD_03810 0.65 -1.2
4,023,146 + ECD_03810 0.65 +0.2
4,023,146 + ECD_03810 0.65 +0.9
4,023,146 + ECD_03810 0.65 +0.1
4,023,146 + ECD_03810 0.65 -0.9
4,023,146 + ECD_03810 0.65 +1.3
4,023,146 + ECD_03810 0.65 -0.4
4,023,146 + ECD_03810 0.65 -0.7
4,023,146 + ECD_03810 0.65 +1.0
4,023,146 + ECD_03810 0.65 -0.2
4,023,146 + ECD_03810 0.65 +0.7
4,023,147 - ECD_03810 0.65 +0.5
4,023,147 - ECD_03810 0.65 +0.1
4,023,147 - ECD_03810 0.65 -0.0
4,023,147 - ECD_03810 0.65 +0.3
4,023,147 - ECD_03810 0.65 +0.4
4,023,147 - ECD_03810 0.65 +0.2
4,023,147 - ECD_03810 0.65 +0.4
4,023,147 - ECD_03810 0.65 -1.0
4,023,147 - ECD_03810 0.65 +0.2
4,023,147 - ECD_03810 0.65 +0.6
4,023,147 - ECD_03810 0.65 -0.4
4,023,147 - ECD_03810 0.65 -0.4
4,023,147 - ECD_03810 0.65 -0.2
4,023,147 - ECD_03810 0.65 -0.1
4,023,147 - ECD_03810 0.65 -0.3
4,023,147 - ECD_03810 0.65 +0.1
4,023,147 - ECD_03810 0.65 +1.0
4,023,147 - ECD_03810 0.65 +0.6
4,023,147 - ECD_03810 0.65 +1.1
4,023,147 - ECD_03810 0.65 +0.4
4,023,147 - ECD_03810 0.65 +0.4
4,023,150 + ECD_03810 0.65 +0.5
4,023,151 - ECD_03810 0.65 -0.5
4,023,151 - ECD_03810 0.65 -0.1
4,023,151 - ECD_03810 0.65 -0.0
4,023,151 - ECD_03810 0.65 +0.6
4,023,258 + ECD_03810 0.76 +0.0
4,023,258 + ECD_03810 0.76 +1.7
4,023,259 - ECD_03810 0.76 +0.8
4,023,259 - ECD_03810 0.76 +1.1
4,023,259 - ECD_03810 0.76 -0.9
4,023,259 - ECD_03810 0.76 +0.9
4,023,263 - ECD_03810 0.76 +0.3
4,023,302 + ECD_03810 0.80 +1.0
4,023,302 + ECD_03810 0.80 +0.4
4,023,302 + ECD_03810 0.80 -0.0
4,023,302 + ECD_03810 0.80 -0.0
4,023,302 + ECD_03810 0.80 +0.3
4,023,303 - ECD_03810 0.80 -0.4
4,023,303 - ECD_03810 0.80 +0.2
4,023,303 - ECD_03810 0.80 -0.3
4,023,303 - ECD_03810 0.80 -1.5
4,023,303 - ECD_03810 0.80 +0.1
4,023,378 + ECD_03810 0.88 +0.0
4,023,378 + ECD_03810 0.88 -0.1
4,023,378 + ECD_03810 0.88 +0.6
4,023,378 + ECD_03810 0.88 -0.1
4,023,378 + ECD_03810 0.88 +1.2
4,023,378 + ECD_03810 0.88 +0.0
4,023,378 + ECD_03810 0.88 +0.6
4,023,379 - ECD_03810 0.88 -2.4
4,023,379 - ECD_03810 0.88 -0.7
4,023,379 - ECD_03810 0.88 +0.5
4,023,379 - ECD_03810 0.88 +0.8

Or see this region's nucleotide sequence