Strain Fitness in Escherichia coli BL21 around ECD_03673

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03672 and ECD_03673 are separated by 2 nucleotidesECD_03673 and ECD_03674 are separated by 190 nucleotides ECD_03672: ECD_03672 - putative ECA polysaccharide chain elongation protein, at 3,868,841 to 3,870,193 _03672 ECD_03673: ECD_03673 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 3,870,196 to 3,870,936 _03673 ECD_03674: ECD_03674 - putative APC family amino acid transporter, at 3,871,127 to 3,872,512 _03674 Position (kb) 3870 3871Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3870.120 kb on - strandat 3870.120 kb on - strandat 3870.151 kb on + strandat 3870.151 kb on + strandat 3870.151 kb on + strandat 3870.201 kb on + strandat 3870.223 kb on + strandat 3870.224 kb on - strandat 3870.224 kb on - strandat 3870.226 kb on - strandat 3870.239 kb on + strandat 3870.281 kb on - strand, within ECD_03673at 3870.281 kb on - strand, within ECD_03673at 3870.281 kb on - strand, within ECD_03673at 3870.303 kb on + strand, within ECD_03673at 3870.377 kb on + strand, within ECD_03673at 3870.382 kb on - strand, within ECD_03673at 3870.397 kb on - strand, within ECD_03673at 3870.400 kb on + strand, within ECD_03673at 3870.401 kb on - strand, within ECD_03673at 3870.423 kb on - strand, within ECD_03673at 3870.435 kb on + strand, within ECD_03673at 3870.573 kb on + strand, within ECD_03673at 3870.600 kb on + strand, within ECD_03673at 3870.622 kb on + strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.781 kb on + strand, within ECD_03673at 3870.782 kb on - strand, within ECD_03673at 3870.782 kb on - strand, within ECD_03673at 3870.850 kb on + strand, within ECD_03673at 3870.995 kb on + strandat 3871.016 kb on + strandat 3871.024 kb on + strandat 3871.024 kb on + strandat 3871.072 kb on - strandat 3871.072 kb on - strandat 3871.072 kb on - strandat 3871.136 kb on - strandat 3871.150 kb on - strandat 3871.174 kb on + strandat 3871.174 kb on + strandat 3871.220 kb on - strandat 3871.220 kb on - strandat 3871.260 kb on + strandat 3871.272 kb on - strand, within ECD_03674at 3871.272 kb on - strand, within ECD_03674at 3871.274 kb on - strand, within ECD_03674at 3871.274 kb on - strand, within ECD_03674at 3871.274 kb on - strand, within ECD_03674at 3871.287 kb on + strand, within ECD_03674at 3871.374 kb on - strand, within ECD_03674at 3871.375 kb on + strand, within ECD_03674at 3871.375 kb on + strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.413 kb on - strand, within ECD_03674at 3871.420 kb on + strand, within ECD_03674at 3871.420 kb on + strand, within ECD_03674at 3871.467 kb on - strand, within ECD_03674at 3871.563 kb on - strand, within ECD_03674at 3871.682 kb on - strand, within ECD_03674at 3871.747 kb on + strand, within ECD_03674at 3871.747 kb on + strand, within ECD_03674at 3871.748 kb on - strand, within ECD_03674at 3871.748 kb on - strand, within ECD_03674at 3871.763 kb on + strand, within ECD_03674at 3871.789 kb on + strand, within ECD_03674at 3871.837 kb on - strand, within ECD_03674at 3871.869 kb on - strand, within ECD_03674at 3871.872 kb on + strand, within ECD_03674at 3871.872 kb on + strand, within ECD_03674at 3871.873 kb on - strand, within ECD_03674at 3871.873 kb on - strand, within ECD_03674at 3871.917 kb on + strand, within ECD_03674at 3871.918 kb on - strand, within ECD_03674at 3871.918 kb on - strand, within ECD_03674

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,870,120 - +0.5
3,870,120 - +1.5
3,870,151 + +1.3
3,870,151 + -0.3
3,870,151 + -0.4
3,870,201 + +0.3
3,870,223 + +1.2
3,870,224 - +0.6
3,870,224 - +0.4
3,870,226 - -0.1
3,870,239 + +0.7
3,870,281 - ECD_03673 0.11 +2.0
3,870,281 - ECD_03673 0.11 +1.8
3,870,281 - ECD_03673 0.11 +0.6
3,870,303 + ECD_03673 0.14 -0.4
3,870,377 + ECD_03673 0.24 -1.1
3,870,382 - ECD_03673 0.25 +0.9
3,870,397 - ECD_03673 0.27 +0.4
3,870,400 + ECD_03673 0.28 +1.2
3,870,401 - ECD_03673 0.28 +1.6
3,870,423 - ECD_03673 0.31 +0.7
3,870,435 + ECD_03673 0.32 +0.5
3,870,573 + ECD_03673 0.51 +2.5
3,870,600 + ECD_03673 0.55 +0.9
3,870,622 + ECD_03673 0.57 +1.2
3,870,628 - ECD_03673 0.58 +0.6
3,870,628 - ECD_03673 0.58 +0.8
3,870,628 - ECD_03673 0.58 +1.3
3,870,760 + ECD_03673 0.76 +0.7
3,870,760 + ECD_03673 0.76 +0.2
3,870,760 + ECD_03673 0.76 +0.7
3,870,761 - ECD_03673 0.76 +0.6
3,870,761 - ECD_03673 0.76 +0.9
3,870,761 - ECD_03673 0.76 +0.9
3,870,761 - ECD_03673 0.76 +1.5
3,870,781 + ECD_03673 0.79 +0.5
3,870,782 - ECD_03673 0.79 +0.9
3,870,782 - ECD_03673 0.79 +0.1
3,870,850 + ECD_03673 0.88 -3.0
3,870,995 + +0.4
3,871,016 + +1.7
3,871,024 + +0.5
3,871,024 + +0.7
3,871,072 - +0.3
3,871,072 - -1.3
3,871,072 - -0.2
3,871,136 - +0.7
3,871,150 - -0.7
3,871,174 + +1.1
3,871,174 + -0.1
3,871,220 - +0.0
3,871,220 - +0.2
3,871,260 + +0.6
3,871,272 - ECD_03674 0.10 -0.3
3,871,272 - ECD_03674 0.10 +0.1
3,871,274 - ECD_03674 0.11 -0.2
3,871,274 - ECD_03674 0.11 -0.3
3,871,274 - ECD_03674 0.11 -0.1
3,871,287 + ECD_03674 0.12 +0.9
3,871,374 - ECD_03674 0.18 -0.5
3,871,375 + ECD_03674 0.18 +0.2
3,871,375 + ECD_03674 0.18 +0.1
3,871,376 - ECD_03674 0.18 +0.2
3,871,376 - ECD_03674 0.18 +0.3
3,871,376 - ECD_03674 0.18 +0.4
3,871,376 - ECD_03674 0.18 +0.2
3,871,376 - ECD_03674 0.18 +0.3
3,871,413 - ECD_03674 0.21 -0.1
3,871,420 + ECD_03674 0.21 -0.2
3,871,420 + ECD_03674 0.21 +0.4
3,871,467 - ECD_03674 0.25 -0.3
3,871,563 - ECD_03674 0.31 +0.9
3,871,682 - ECD_03674 0.40 -0.5
3,871,747 + ECD_03674 0.45 -0.6
3,871,747 + ECD_03674 0.45 -0.3
3,871,748 - ECD_03674 0.45 -2.1
3,871,748 - ECD_03674 0.45 +1.0
3,871,763 + ECD_03674 0.46 -0.1
3,871,789 + ECD_03674 0.48 -0.1
3,871,837 - ECD_03674 0.51 -0.8
3,871,869 - ECD_03674 0.54 -0.6
3,871,872 + ECD_03674 0.54 -0.1
3,871,872 + ECD_03674 0.54 -0.4
3,871,873 - ECD_03674 0.54 -0.4
3,871,873 - ECD_03674 0.54 +2.1
3,871,917 + ECD_03674 0.57 +0.3
3,871,918 - ECD_03674 0.57 +0.6
3,871,918 - ECD_03674 0.57 -0.9

Or see this region's nucleotide sequence