Strain Fitness in Escherichia coli BL21 around ECD_03612

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03611 and ECD_03612 are separated by 85 nucleotidesECD_03612 and ECD_03613 are separated by 313 nucleotides ECD_03611: ECD_03611 - phosphate ABC transporter permease, at 3,798,241 to 3,799,200 _03611 ECD_03612: ECD_03612 - phosphate ABC transporter periplasmic binding protein, at 3,799,286 to 3,800,326 _03612 ECD_03613: ECD_03613 - L-glutamine:D-fructose-6-phosphate aminotransferase, at 3,800,640 to 3,802,469 _03613 Position (kb) 3799 3800 3801Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3798.310 kb on - strandat 3798.403 kb on - strand, within ECD_03611at 3798.403 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.444 kb on - strand, within ECD_03611at 3798.444 kb on - strand, within ECD_03611at 3798.444 kb on - strand, within ECD_03611at 3798.559 kb on - strand, within ECD_03611at 3798.754 kb on - strand, within ECD_03611at 3799.227 kb on - strandat 3799.316 kb on - strandat 3799.490 kb on - strand, within ECD_03612at 3799.490 kb on - strand, within ECD_03612at 3799.499 kb on - strand, within ECD_03612at 3799.499 kb on - strand, within ECD_03612at 3799.610 kb on - strand, within ECD_03612at 3799.655 kb on - strand, within ECD_03612at 3799.660 kb on - strand, within ECD_03612at 3799.666 kb on - strand, within ECD_03612at 3799.666 kb on - strand, within ECD_03612at 3799.666 kb on - strand, within ECD_03612at 3799.666 kb on - strand, within ECD_03612at 3799.760 kb on - strand, within ECD_03612at 3799.769 kb on - strand, within ECD_03612at 3799.769 kb on - strand, within ECD_03612at 3799.810 kb on - strand, within ECD_03612at 3799.810 kb on - strand, within ECD_03612at 3799.857 kb on - strand, within ECD_03612at 3799.857 kb on - strand, within ECD_03612at 3799.857 kb on - strand, within ECD_03612at 3799.857 kb on - strand, within ECD_03612at 3799.942 kb on - strand, within ECD_03612at 3799.942 kb on - strand, within ECD_03612at 3799.942 kb on - strand, within ECD_03612at 3799.961 kb on - strand, within ECD_03612at 3800.108 kb on - strand, within ECD_03612at 3800.145 kb on - strand, within ECD_03612at 3800.145 kb on - strand, within ECD_03612at 3800.145 kb on - strand, within ECD_03612at 3800.145 kb on - strand, within ECD_03612at 3800.145 kb on - strand, within ECD_03612at 3800.155 kb on - strand, within ECD_03612at 3800.159 kb on - strand, within ECD_03612at 3800.159 kb on - strand, within ECD_03612at 3800.159 kb on - strand, within ECD_03612at 3800.185 kb on - strand, within ECD_03612at 3800.206 kb on - strand, within ECD_03612at 3800.318 kb on - strandat 3800.327 kb on - strandat 3800.349 kb on - strandat 3800.402 kb on - strandat 3800.404 kb on - strandat 3800.404 kb on - strandat 3800.404 kb on - strandat 3800.404 kb on - strandat 3800.404 kb on - strandat 3800.404 kb on - strandat 3800.404 kb on - strandat 3800.404 kb on - strandat 3800.407 kb on + strandat 3800.408 kb on - strandat 3800.426 kb on - strandat 3800.597 kb on + strandat 3800.638 kb on + strandat 3800.638 kb on + strandat 3800.638 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,798,310 - +0.1
3,798,403 - ECD_03611 0.17 -0.5
3,798,403 - ECD_03611 0.17 +1.4
3,798,420 - ECD_03611 0.19 -1.0
3,798,420 - ECD_03611 0.19 +0.1
3,798,420 - ECD_03611 0.19 +0.1
3,798,420 - ECD_03611 0.19 +0.3
3,798,444 - ECD_03611 0.21 +0.6
3,798,444 - ECD_03611 0.21 +0.8
3,798,444 - ECD_03611 0.21 +0.5
3,798,559 - ECD_03611 0.33 +0.3
3,798,754 - ECD_03611 0.53 +0.9
3,799,227 - -0.6
3,799,316 - -0.2
3,799,490 - ECD_03612 0.20 -1.7
3,799,490 - ECD_03612 0.20 +0.7
3,799,499 - ECD_03612 0.20 -1.1
3,799,499 - ECD_03612 0.20 +0.1
3,799,610 - ECD_03612 0.31 -1.9
3,799,655 - ECD_03612 0.35 -0.1
3,799,660 - ECD_03612 0.36 -0.3
3,799,666 - ECD_03612 0.37 -0.8
3,799,666 - ECD_03612 0.37 +0.2
3,799,666 - ECD_03612 0.37 -2.0
3,799,666 - ECD_03612 0.37 -1.5
3,799,760 - ECD_03612 0.46 -0.1
3,799,769 - ECD_03612 0.46 +0.2
3,799,769 - ECD_03612 0.46 -0.2
3,799,810 - ECD_03612 0.50 -1.5
3,799,810 - ECD_03612 0.50 -1.3
3,799,857 - ECD_03612 0.55 -1.1
3,799,857 - ECD_03612 0.55 +0.2
3,799,857 - ECD_03612 0.55 +0.3
3,799,857 - ECD_03612 0.55 -0.2
3,799,942 - ECD_03612 0.63 -1.3
3,799,942 - ECD_03612 0.63 +0.4
3,799,942 - ECD_03612 0.63 +0.2
3,799,961 - ECD_03612 0.65 -1.7
3,800,108 - ECD_03612 0.79 -1.5
3,800,145 - ECD_03612 0.83 -0.1
3,800,145 - ECD_03612 0.83 -0.5
3,800,145 - ECD_03612 0.83 -1.7
3,800,145 - ECD_03612 0.83 -0.5
3,800,145 - ECD_03612 0.83 -1.9
3,800,155 - ECD_03612 0.83 -0.6
3,800,159 - ECD_03612 0.84 -0.5
3,800,159 - ECD_03612 0.84 -0.4
3,800,159 - ECD_03612 0.84 -0.3
3,800,185 - ECD_03612 0.86 -1.0
3,800,206 - ECD_03612 0.88 -2.0
3,800,318 - -0.7
3,800,327 - +0.6
3,800,349 - -0.5
3,800,402 - -0.1
3,800,404 - -0.0
3,800,404 - +0.1
3,800,404 - -0.3
3,800,404 - +0.0
3,800,404 - -1.0
3,800,404 - +0.0
3,800,404 - -0.6
3,800,404 - +0.1
3,800,407 + -0.3
3,800,408 - +0.2
3,800,426 - +0.9
3,800,597 + +0.3
3,800,638 + +0.0
3,800,638 + -0.3
3,800,638 + +2.8

Or see this region's nucleotide sequence