Strain Fitness in Escherichia coli BL21 around ECD_03438

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03437 and ECD_03438 are separated by 10 nucleotidesECD_03438 and ECD_03439 are separated by 120 nucleotidesECD_03439 and ECD_03440 are separated by 123 nucleotides ECD_03437: ECD_03437 - putative permease, at 3,614,006 to 3,615,406 _03437 ECD_03438: ECD_03438 - hypothetical protein, at 3,615,417 to 3,617,396 _03438 ECD_03439: ECD_03439 - putative outer membrane protein, at 3,617,517 to 3,618,257 _03439 ECD_03440: ECD_03440 - putative DNA-binding transcriptional regulator, at 3,618,381 to 3,619,355 _03440 Position (kb) 3615 3616 3617 3618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3614.544 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.556 kb on + strand, within ECD_03437at 3614.557 kb on - strand, within ECD_03437at 3614.756 kb on - strand, within ECD_03437at 3614.801 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.803 kb on + strand, within ECD_03437at 3614.804 kb on - strand, within ECD_03437at 3614.804 kb on - strand, within ECD_03437at 3614.804 kb on - strand, within ECD_03437at 3614.804 kb on - strand, within ECD_03437at 3614.804 kb on - strand, within ECD_03437at 3614.804 kb on - strand, within ECD_03437at 3614.808 kb on - strand, within ECD_03437at 3614.808 kb on - strand, within ECD_03437at 3614.808 kb on - strand, within ECD_03437at 3614.808 kb on - strand, within ECD_03437at 3614.808 kb on - strand, within ECD_03437at 3614.815 kb on + strand, within ECD_03437at 3614.820 kb on - strand, within ECD_03437at 3614.826 kb on + strand, within ECD_03437at 3614.826 kb on + strand, within ECD_03437at 3614.827 kb on - strand, within ECD_03437at 3614.827 kb on - strand, within ECD_03437at 3614.827 kb on - strand, within ECD_03437at 3614.836 kb on + strand, within ECD_03437at 3614.843 kb on + strand, within ECD_03437at 3614.939 kb on + strand, within ECD_03437at 3614.942 kb on + strand, within ECD_03437at 3614.943 kb on - strand, within ECD_03437at 3614.945 kb on + strand, within ECD_03437at 3614.945 kb on + strand, within ECD_03437at 3614.946 kb on - strand, within ECD_03437at 3614.946 kb on - strand, within ECD_03437at 3615.104 kb on + strand, within ECD_03437at 3615.105 kb on - strand, within ECD_03437at 3615.105 kb on - strand, within ECD_03437at 3615.126 kb on + strand, within ECD_03437at 3615.291 kb on + strandat 3615.369 kb on + strandat 3615.369 kb on + strandat 3615.370 kb on - strandat 3615.370 kb on - strandat 3615.370 kb on - strandat 3615.370 kb on - strandat 3615.396 kb on + strandat 3615.397 kb on - strandat 3615.397 kb on - strandat 3615.443 kb on + strandat 3615.716 kb on - strand, within ECD_03438at 3615.753 kb on + strand, within ECD_03438at 3615.762 kb on - strand, within ECD_03438at 3615.765 kb on + strand, within ECD_03438at 3615.766 kb on - strand, within ECD_03438at 3615.766 kb on - strand, within ECD_03438at 3615.766 kb on - strand, within ECD_03438at 3615.920 kb on + strand, within ECD_03438at 3615.921 kb on - strand, within ECD_03438at 3615.932 kb on - strand, within ECD_03438at 3615.950 kb on + strand, within ECD_03438at 3615.951 kb on - strand, within ECD_03438at 3615.951 kb on - strand, within ECD_03438at 3615.951 kb on - strand, within ECD_03438at 3615.995 kb on - strand, within ECD_03438at 3616.080 kb on + strand, within ECD_03438at 3616.081 kb on - strand, within ECD_03438at 3616.081 kb on - strand, within ECD_03438at 3616.131 kb on + strand, within ECD_03438at 3616.131 kb on + strand, within ECD_03438at 3616.132 kb on - strand, within ECD_03438at 3616.220 kb on - strand, within ECD_03438at 3616.264 kb on + strand, within ECD_03438at 3616.313 kb on + strand, within ECD_03438at 3616.314 kb on - strand, within ECD_03438at 3616.330 kb on + strand, within ECD_03438at 3616.330 kb on + strand, within ECD_03438at 3616.331 kb on - strand, within ECD_03438at 3616.331 kb on - strand, within ECD_03438at 3616.332 kb on + strand, within ECD_03438at 3616.332 kb on + strand, within ECD_03438at 3616.332 kb on + strand, within ECD_03438at 3616.332 kb on + strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.333 kb on - strand, within ECD_03438at 3616.334 kb on + strand, within ECD_03438at 3616.334 kb on + strand, within ECD_03438at 3616.334 kb on + strand, within ECD_03438at 3616.334 kb on + strand, within ECD_03438at 3616.335 kb on - strand, within ECD_03438at 3616.335 kb on - strand, within ECD_03438at 3616.337 kb on + strand, within ECD_03438at 3616.386 kb on + strand, within ECD_03438at 3616.411 kb on - strand, within ECD_03438at 3616.411 kb on - strand, within ECD_03438at 3616.485 kb on + strand, within ECD_03438at 3616.486 kb on - strand, within ECD_03438at 3616.512 kb on + strand, within ECD_03438at 3616.579 kb on + strand, within ECD_03438at 3616.580 kb on - strand, within ECD_03438at 3616.701 kb on + strand, within ECD_03438at 3616.702 kb on - strand, within ECD_03438at 3616.707 kb on + strand, within ECD_03438at 3616.708 kb on - strand, within ECD_03438at 3616.731 kb on + strand, within ECD_03438at 3616.731 kb on + strand, within ECD_03438at 3616.732 kb on - strand, within ECD_03438at 3616.734 kb on - strand, within ECD_03438at 3616.741 kb on + strand, within ECD_03438at 3616.741 kb on + strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.742 kb on - strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.743 kb on + strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.744 kb on - strand, within ECD_03438at 3616.809 kb on + strand, within ECD_03438at 3616.858 kb on + strand, within ECD_03438at 3616.858 kb on + strand, within ECD_03438at 3616.865 kb on + strand, within ECD_03438at 3616.866 kb on - strand, within ECD_03438at 3616.866 kb on - strand, within ECD_03438at 3616.876 kb on + strand, within ECD_03438at 3616.876 kb on + strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.877 kb on - strand, within ECD_03438at 3616.912 kb on + strand, within ECD_03438at 3616.912 kb on + strand, within ECD_03438at 3616.912 kb on + strand, within ECD_03438at 3616.940 kb on + strand, within ECD_03438at 3617.092 kb on - strand, within ECD_03438at 3617.263 kb on - strandat 3617.327 kb on + strandat 3617.458 kb on - strandat 3617.458 kb on - strandat 3617.466 kb on + strandat 3617.466 kb on + strandat 3617.467 kb on - strandat 3617.467 kb on - strandat 3617.549 kb on + strandat 3617.561 kb on + strandat 3617.585 kb on + strandat 3617.629 kb on - strand, within ECD_03439at 3617.629 kb on - strand, within ECD_03439at 3617.640 kb on + strand, within ECD_03439at 3617.641 kb on - strand, within ECD_03439at 3617.641 kb on - strand, within ECD_03439at 3617.671 kb on + strand, within ECD_03439at 3617.672 kb on - strand, within ECD_03439at 3617.672 kb on - strand, within ECD_03439at 3617.744 kb on - strand, within ECD_03439at 3617.744 kb on - strand, within ECD_03439at 3617.744 kb on - strand, within ECD_03439at 3617.746 kb on + strand, within ECD_03439at 3617.746 kb on + strand, within ECD_03439at 3617.747 kb on - strand, within ECD_03439at 3617.747 kb on - strand, within ECD_03439at 3617.749 kb on + strand, within ECD_03439at 3617.749 kb on + strand, within ECD_03439at 3617.750 kb on - strand, within ECD_03439at 3617.770 kb on + strand, within ECD_03439at 3617.770 kb on + strand, within ECD_03439at 3617.771 kb on - strand, within ECD_03439at 3617.771 kb on - strand, within ECD_03439at 3617.811 kb on + strand, within ECD_03439at 3617.812 kb on - strand, within ECD_03439at 3617.836 kb on - strand, within ECD_03439at 3617.942 kb on + strand, within ECD_03439at 3617.945 kb on + strand, within ECD_03439at 3617.954 kb on + strand, within ECD_03439at 3617.955 kb on - strand, within ECD_03439at 3617.975 kb on - strand, within ECD_03439at 3618.030 kb on - strand, within ECD_03439at 3618.107 kb on + strand, within ECD_03439

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,614,544 + ECD_03437 0.38 +0.6
3,614,556 + ECD_03437 0.39 +0.4
3,614,556 + ECD_03437 0.39 +1.2
3,614,556 + ECD_03437 0.39 +2.0
3,614,556 + ECD_03437 0.39 +0.8
3,614,556 + ECD_03437 0.39 -0.5
3,614,556 + ECD_03437 0.39 -0.0
3,614,556 + ECD_03437 0.39 -0.7
3,614,557 - ECD_03437 0.39 +0.3
3,614,756 - ECD_03437 0.54 -0.6
3,614,801 + ECD_03437 0.57 -0.1
3,614,803 + ECD_03437 0.57 -0.0
3,614,803 + ECD_03437 0.57 +0.2
3,614,803 + ECD_03437 0.57 +0.4
3,614,803 + ECD_03437 0.57 +0.2
3,614,803 + ECD_03437 0.57 -0.5
3,614,803 + ECD_03437 0.57 +0.7
3,614,803 + ECD_03437 0.57 -0.7
3,614,803 + ECD_03437 0.57 +0.5
3,614,803 + ECD_03437 0.57 +0.6
3,614,803 + ECD_03437 0.57 +0.5
3,614,803 + ECD_03437 0.57 +0.2
3,614,803 + ECD_03437 0.57 +0.5
3,614,803 + ECD_03437 0.57 -0.4
3,614,803 + ECD_03437 0.57 +0.9
3,614,804 - ECD_03437 0.57 +0.4
3,614,804 - ECD_03437 0.57 -0.3
3,614,804 - ECD_03437 0.57 +0.1
3,614,804 - ECD_03437 0.57 +0.1
3,614,804 - ECD_03437 0.57 -0.5
3,614,804 - ECD_03437 0.57 -0.3
3,614,808 - ECD_03437 0.57 +0.6
3,614,808 - ECD_03437 0.57 +0.7
3,614,808 - ECD_03437 0.57 +0.3
3,614,808 - ECD_03437 0.57 +0.0
3,614,808 - ECD_03437 0.57 +0.1
3,614,815 + ECD_03437 0.58 +0.4
3,614,820 - ECD_03437 0.58 +0.1
3,614,826 + ECD_03437 0.59 -0.0
3,614,826 + ECD_03437 0.59 +0.4
3,614,827 - ECD_03437 0.59 +0.6
3,614,827 - ECD_03437 0.59 -0.7
3,614,827 - ECD_03437 0.59 +0.2
3,614,836 + ECD_03437 0.59 +0.5
3,614,843 + ECD_03437 0.60 +1.0
3,614,939 + ECD_03437 0.67 +0.5
3,614,942 + ECD_03437 0.67 -0.7
3,614,943 - ECD_03437 0.67 -0.3
3,614,945 + ECD_03437 0.67 -0.3
3,614,945 + ECD_03437 0.67 +0.3
3,614,946 - ECD_03437 0.67 +2.9
3,614,946 - ECD_03437 0.67 +0.4
3,615,104 + ECD_03437 0.78 -2.4
3,615,105 - ECD_03437 0.78 +0.3
3,615,105 - ECD_03437 0.78 +0.3
3,615,126 + ECD_03437 0.80 +0.1
3,615,291 + -1.7
3,615,369 + -0.3
3,615,369 + +0.1
3,615,370 - -0.2
3,615,370 - -0.3
3,615,370 - +0.2
3,615,370 - +0.2
3,615,396 + +0.3
3,615,397 - +0.4
3,615,397 - +0.5
3,615,443 + -0.1
3,615,716 - ECD_03438 0.15 +0.6
3,615,753 + ECD_03438 0.17 -1.0
3,615,762 - ECD_03438 0.17 -0.7
3,615,765 + ECD_03438 0.18 -0.2
3,615,766 - ECD_03438 0.18 -0.4
3,615,766 - ECD_03438 0.18 -0.1
3,615,766 - ECD_03438 0.18 -0.1
3,615,920 + ECD_03438 0.25 +0.3
3,615,921 - ECD_03438 0.25 +1.0
3,615,932 - ECD_03438 0.26 +0.8
3,615,950 + ECD_03438 0.27 +0.6
3,615,951 - ECD_03438 0.27 +0.2
3,615,951 - ECD_03438 0.27 +0.0
3,615,951 - ECD_03438 0.27 -0.3
3,615,995 - ECD_03438 0.29 +0.7
3,616,080 + ECD_03438 0.33 +0.5
3,616,081 - ECD_03438 0.34 +1.0
3,616,081 - ECD_03438 0.34 +0.3
3,616,131 + ECD_03438 0.36 -0.2
3,616,131 + ECD_03438 0.36 -0.5
3,616,132 - ECD_03438 0.36 +0.9
3,616,220 - ECD_03438 0.41 -0.3
3,616,264 + ECD_03438 0.43 -0.2
3,616,313 + ECD_03438 0.45 -0.5
3,616,314 - ECD_03438 0.45 +0.8
3,616,330 + ECD_03438 0.46 -0.4
3,616,330 + ECD_03438 0.46 +0.7
3,616,331 - ECD_03438 0.46 -1.3
3,616,331 - ECD_03438 0.46 -0.0
3,616,332 + ECD_03438 0.46 +0.4
3,616,332 + ECD_03438 0.46 +0.1
3,616,332 + ECD_03438 0.46 +0.2
3,616,332 + ECD_03438 0.46 +0.6
3,616,333 - ECD_03438 0.46 +0.2
3,616,333 - ECD_03438 0.46 -0.1
3,616,333 - ECD_03438 0.46 +0.4
3,616,333 - ECD_03438 0.46 +1.0
3,616,333 - ECD_03438 0.46 +0.6
3,616,333 - ECD_03438 0.46 +0.5
3,616,333 - ECD_03438 0.46 -0.8
3,616,333 - ECD_03438 0.46 +1.6
3,616,333 - ECD_03438 0.46 -0.3
3,616,333 - ECD_03438 0.46 -0.5
3,616,334 + ECD_03438 0.46 +0.9
3,616,334 + ECD_03438 0.46 +0.8
3,616,334 + ECD_03438 0.46 -1.1
3,616,334 + ECD_03438 0.46 +0.6
3,616,335 - ECD_03438 0.46 -0.1
3,616,335 - ECD_03438 0.46 +0.6
3,616,337 + ECD_03438 0.46 +1.1
3,616,386 + ECD_03438 0.49 +0.4
3,616,411 - ECD_03438 0.50 +0.3
3,616,411 - ECD_03438 0.50 +0.8
3,616,485 + ECD_03438 0.54 -0.1
3,616,486 - ECD_03438 0.54 -0.2
3,616,512 + ECD_03438 0.55 +0.3
3,616,579 + ECD_03438 0.59 +0.4
3,616,580 - ECD_03438 0.59 -0.2
3,616,701 + ECD_03438 0.65 +1.0
3,616,702 - ECD_03438 0.65 -0.1
3,616,707 + ECD_03438 0.65 +2.9
3,616,708 - ECD_03438 0.65 -1.5
3,616,731 + ECD_03438 0.66 +0.3
3,616,731 + ECD_03438 0.66 -0.5
3,616,732 - ECD_03438 0.66 -0.5
3,616,734 - ECD_03438 0.67 -1.2
3,616,741 + ECD_03438 0.67 +1.1
3,616,741 + ECD_03438 0.67 +0.2
3,616,742 - ECD_03438 0.67 +0.1
3,616,742 - ECD_03438 0.67 -2.4
3,616,742 - ECD_03438 0.67 -0.0
3,616,742 - ECD_03438 0.67 +0.8
3,616,742 - ECD_03438 0.67 -0.2
3,616,742 - ECD_03438 0.67 +0.4
3,616,742 - ECD_03438 0.67 -0.5
3,616,743 + ECD_03438 0.67 -0.4
3,616,743 + ECD_03438 0.67 -0.4
3,616,743 + ECD_03438 0.67 -0.3
3,616,743 + ECD_03438 0.67 +0.6
3,616,743 + ECD_03438 0.67 +0.2
3,616,744 - ECD_03438 0.67 -1.3
3,616,744 - ECD_03438 0.67 +0.4
3,616,744 - ECD_03438 0.67 +0.1
3,616,744 - ECD_03438 0.67 +0.4
3,616,809 + ECD_03438 0.70 +1.0
3,616,858 + ECD_03438 0.73 +1.0
3,616,858 + ECD_03438 0.73 -0.0
3,616,865 + ECD_03438 0.73 +0.4
3,616,866 - ECD_03438 0.73 +0.3
3,616,866 - ECD_03438 0.73 +0.3
3,616,876 + ECD_03438 0.74 -0.2
3,616,876 + ECD_03438 0.74 -0.3
3,616,877 - ECD_03438 0.74 +0.5
3,616,877 - ECD_03438 0.74 +0.4
3,616,877 - ECD_03438 0.74 -0.7
3,616,877 - ECD_03438 0.74 +0.3
3,616,912 + ECD_03438 0.76 -0.1
3,616,912 + ECD_03438 0.76 +0.7
3,616,912 + ECD_03438 0.76 +0.3
3,616,940 + ECD_03438 0.77 -0.2
3,617,092 - ECD_03438 0.85 -0.2
3,617,263 - +0.3
3,617,327 + +0.4
3,617,458 - +1.5
3,617,458 - +0.6
3,617,466 + -0.2
3,617,466 + -0.0
3,617,467 - -0.1
3,617,467 - -0.3
3,617,549 + -0.2
3,617,561 + +0.5
3,617,585 + +0.0
3,617,629 - ECD_03439 0.15 +0.4
3,617,629 - ECD_03439 0.15 +0.2
3,617,640 + ECD_03439 0.17 +1.3
3,617,641 - ECD_03439 0.17 -0.2
3,617,641 - ECD_03439 0.17 +1.2
3,617,671 + ECD_03439 0.21 +0.3
3,617,672 - ECD_03439 0.21 +0.0
3,617,672 - ECD_03439 0.21 +0.0
3,617,744 - ECD_03439 0.31 +0.2
3,617,744 - ECD_03439 0.31 +0.3
3,617,744 - ECD_03439 0.31 +1.8
3,617,746 + ECD_03439 0.31 -0.1
3,617,746 + ECD_03439 0.31 -0.5
3,617,747 - ECD_03439 0.31 -0.3
3,617,747 - ECD_03439 0.31 +2.1
3,617,749 + ECD_03439 0.31 +0.2
3,617,749 + ECD_03439 0.31 +0.3
3,617,750 - ECD_03439 0.31 -0.2
3,617,770 + ECD_03439 0.34 +0.2
3,617,770 + ECD_03439 0.34 +1.0
3,617,771 - ECD_03439 0.34 +0.0
3,617,771 - ECD_03439 0.34 +0.3
3,617,811 + ECD_03439 0.40 -0.1
3,617,812 - ECD_03439 0.40 -0.0
3,617,836 - ECD_03439 0.43 -0.8
3,617,942 + ECD_03439 0.57 -0.1
3,617,945 + ECD_03439 0.58 +1.0
3,617,954 + ECD_03439 0.59 +0.1
3,617,955 - ECD_03439 0.59 -0.7
3,617,975 - ECD_03439 0.62 -0.2
3,618,030 - ECD_03439 0.69 +0.8
3,618,107 + ECD_03439 0.80 +0.2

Or see this region's nucleotide sequence