Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03437 and ECD_03438 are separated by 10 nucleotides ECD_03438 and ECD_03439 are separated by 120 nucleotides ECD_03439 and ECD_03440 are separated by 123 nucleotides
ECD_03437: ECD_03437 - putative permease, at 3,614,006 to 3,615,406
_03437
ECD_03438: ECD_03438 - hypothetical protein, at 3,615,417 to 3,617,396
_03438
ECD_03439: ECD_03439 - putative outer membrane protein, at 3,617,517 to 3,618,257
_03439
ECD_03440: ECD_03440 - putative DNA-binding transcriptional regulator, at 3,618,381 to 3,619,355
_03440
Position (kb)
3615
3616
3617
3618 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3614.544 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.556 kb on + strand, within ECD_03437 at 3614.557 kb on - strand, within ECD_03437 at 3614.756 kb on - strand, within ECD_03437 at 3614.801 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.803 kb on + strand, within ECD_03437 at 3614.804 kb on - strand, within ECD_03437 at 3614.804 kb on - strand, within ECD_03437 at 3614.804 kb on - strand, within ECD_03437 at 3614.804 kb on - strand, within ECD_03437 at 3614.804 kb on - strand, within ECD_03437 at 3614.804 kb on - strand, within ECD_03437 at 3614.808 kb on - strand, within ECD_03437 at 3614.808 kb on - strand, within ECD_03437 at 3614.808 kb on - strand, within ECD_03437 at 3614.808 kb on - strand, within ECD_03437 at 3614.808 kb on - strand, within ECD_03437 at 3614.815 kb on + strand, within ECD_03437 at 3614.820 kb on - strand, within ECD_03437 at 3614.826 kb on + strand, within ECD_03437 at 3614.826 kb on + strand, within ECD_03437 at 3614.827 kb on - strand, within ECD_03437 at 3614.827 kb on - strand, within ECD_03437 at 3614.827 kb on - strand, within ECD_03437 at 3614.836 kb on + strand, within ECD_03437 at 3614.843 kb on + strand, within ECD_03437 at 3614.939 kb on + strand, within ECD_03437 at 3614.942 kb on + strand, within ECD_03437 at 3614.943 kb on - strand, within ECD_03437 at 3614.945 kb on + strand, within ECD_03437 at 3614.945 kb on + strand, within ECD_03437 at 3614.946 kb on - strand, within ECD_03437 at 3614.946 kb on - strand, within ECD_03437 at 3615.104 kb on + strand, within ECD_03437 at 3615.105 kb on - strand, within ECD_03437 at 3615.105 kb on - strand, within ECD_03437 at 3615.126 kb on + strand, within ECD_03437 at 3615.291 kb on + strand at 3615.369 kb on + strand at 3615.369 kb on + strand at 3615.370 kb on - strand at 3615.370 kb on - strand at 3615.370 kb on - strand at 3615.370 kb on - strand at 3615.396 kb on + strand at 3615.397 kb on - strand at 3615.397 kb on - strand at 3615.443 kb on + strand at 3615.716 kb on - strand, within ECD_03438 at 3615.753 kb on + strand, within ECD_03438 at 3615.762 kb on - strand, within ECD_03438 at 3615.765 kb on + strand, within ECD_03438 at 3615.766 kb on - strand, within ECD_03438 at 3615.766 kb on - strand, within ECD_03438 at 3615.766 kb on - strand, within ECD_03438 at 3615.920 kb on + strand, within ECD_03438 at 3615.921 kb on - strand, within ECD_03438 at 3615.932 kb on - strand, within ECD_03438 at 3615.950 kb on + strand, within ECD_03438 at 3615.951 kb on - strand, within ECD_03438 at 3615.951 kb on - strand, within ECD_03438 at 3615.951 kb on - strand, within ECD_03438 at 3615.995 kb on - strand, within ECD_03438 at 3616.080 kb on + strand, within ECD_03438 at 3616.081 kb on - strand, within ECD_03438 at 3616.081 kb on - strand, within ECD_03438 at 3616.131 kb on + strand, within ECD_03438 at 3616.131 kb on + strand, within ECD_03438 at 3616.132 kb on - strand, within ECD_03438 at 3616.220 kb on - strand, within ECD_03438 at 3616.264 kb on + strand, within ECD_03438 at 3616.313 kb on + strand, within ECD_03438 at 3616.314 kb on - strand, within ECD_03438 at 3616.330 kb on + strand, within ECD_03438 at 3616.330 kb on + strand, within ECD_03438 at 3616.331 kb on - strand, within ECD_03438 at 3616.331 kb on - strand, within ECD_03438 at 3616.332 kb on + strand, within ECD_03438 at 3616.332 kb on + strand, within ECD_03438 at 3616.332 kb on + strand, within ECD_03438 at 3616.332 kb on + strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.333 kb on - strand, within ECD_03438 at 3616.334 kb on + strand, within ECD_03438 at 3616.334 kb on + strand, within ECD_03438 at 3616.334 kb on + strand, within ECD_03438 at 3616.334 kb on + strand, within ECD_03438 at 3616.335 kb on - strand, within ECD_03438 at 3616.335 kb on - strand, within ECD_03438 at 3616.337 kb on + strand, within ECD_03438 at 3616.386 kb on + strand, within ECD_03438 at 3616.411 kb on - strand, within ECD_03438 at 3616.411 kb on - strand, within ECD_03438 at 3616.485 kb on + strand, within ECD_03438 at 3616.486 kb on - strand, within ECD_03438 at 3616.512 kb on + strand, within ECD_03438 at 3616.579 kb on + strand, within ECD_03438 at 3616.580 kb on - strand, within ECD_03438 at 3616.701 kb on + strand, within ECD_03438 at 3616.702 kb on - strand, within ECD_03438 at 3616.707 kb on + strand, within ECD_03438 at 3616.708 kb on - strand, within ECD_03438 at 3616.731 kb on + strand, within ECD_03438 at 3616.731 kb on + strand, within ECD_03438 at 3616.732 kb on - strand, within ECD_03438 at 3616.734 kb on - strand, within ECD_03438 at 3616.741 kb on + strand, within ECD_03438 at 3616.741 kb on + strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.742 kb on - strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.743 kb on + strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.744 kb on - strand, within ECD_03438 at 3616.809 kb on + strand, within ECD_03438 at 3616.858 kb on + strand, within ECD_03438 at 3616.858 kb on + strand, within ECD_03438 at 3616.865 kb on + strand, within ECD_03438 at 3616.866 kb on - strand, within ECD_03438 at 3616.866 kb on - strand, within ECD_03438 at 3616.876 kb on + strand, within ECD_03438 at 3616.876 kb on + strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.877 kb on - strand, within ECD_03438 at 3616.912 kb on + strand, within ECD_03438 at 3616.912 kb on + strand, within ECD_03438 at 3616.912 kb on + strand, within ECD_03438 at 3616.940 kb on + strand, within ECD_03438 at 3617.092 kb on - strand, within ECD_03438 at 3617.263 kb on - strand at 3617.327 kb on + strand at 3617.458 kb on - strand at 3617.458 kb on - strand at 3617.466 kb on + strand at 3617.466 kb on + strand at 3617.467 kb on - strand at 3617.467 kb on - strand at 3617.549 kb on + strand at 3617.561 kb on + strand at 3617.585 kb on + strand at 3617.629 kb on - strand, within ECD_03439 at 3617.629 kb on - strand, within ECD_03439 at 3617.640 kb on + strand, within ECD_03439 at 3617.641 kb on - strand, within ECD_03439 at 3617.641 kb on - strand, within ECD_03439 at 3617.671 kb on + strand, within ECD_03439 at 3617.672 kb on - strand, within ECD_03439 at 3617.672 kb on - strand, within ECD_03439 at 3617.744 kb on - strand, within ECD_03439 at 3617.744 kb on - strand, within ECD_03439 at 3617.744 kb on - strand, within ECD_03439 at 3617.746 kb on + strand, within ECD_03439 at 3617.746 kb on + strand, within ECD_03439 at 3617.747 kb on - strand, within ECD_03439 at 3617.747 kb on - strand, within ECD_03439 at 3617.749 kb on + strand, within ECD_03439 at 3617.749 kb on + strand, within ECD_03439 at 3617.750 kb on - strand, within ECD_03439 at 3617.770 kb on + strand, within ECD_03439 at 3617.770 kb on + strand, within ECD_03439 at 3617.771 kb on - strand, within ECD_03439 at 3617.771 kb on - strand, within ECD_03439 at 3617.811 kb on + strand, within ECD_03439 at 3617.812 kb on - strand, within ECD_03439 at 3617.836 kb on - strand, within ECD_03439 at 3617.942 kb on + strand, within ECD_03439 at 3617.945 kb on + strand, within ECD_03439 at 3617.954 kb on + strand, within ECD_03439 at 3617.955 kb on - strand, within ECD_03439 at 3617.975 kb on - strand, within ECD_03439 at 3618.030 kb on - strand, within ECD_03439 at 3618.107 kb on + strand, within ECD_03439
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,614,544 + ECD_03437 0.38 +0.6 3,614,556 + ECD_03437 0.39 +0.4 3,614,556 + ECD_03437 0.39 +1.2 3,614,556 + ECD_03437 0.39 +2.0 3,614,556 + ECD_03437 0.39 +0.8 3,614,556 + ECD_03437 0.39 -0.5 3,614,556 + ECD_03437 0.39 -0.0 3,614,556 + ECD_03437 0.39 -0.7 3,614,557 - ECD_03437 0.39 +0.3 3,614,756 - ECD_03437 0.54 -0.6 3,614,801 + ECD_03437 0.57 -0.1 3,614,803 + ECD_03437 0.57 -0.0 3,614,803 + ECD_03437 0.57 +0.2 3,614,803 + ECD_03437 0.57 +0.4 3,614,803 + ECD_03437 0.57 +0.2 3,614,803 + ECD_03437 0.57 -0.5 3,614,803 + ECD_03437 0.57 +0.7 3,614,803 + ECD_03437 0.57 -0.7 3,614,803 + ECD_03437 0.57 +0.5 3,614,803 + ECD_03437 0.57 +0.6 3,614,803 + ECD_03437 0.57 +0.5 3,614,803 + ECD_03437 0.57 +0.2 3,614,803 + ECD_03437 0.57 +0.5 3,614,803 + ECD_03437 0.57 -0.4 3,614,803 + ECD_03437 0.57 +0.9 3,614,804 - ECD_03437 0.57 +0.4 3,614,804 - ECD_03437 0.57 -0.3 3,614,804 - ECD_03437 0.57 +0.1 3,614,804 - ECD_03437 0.57 +0.1 3,614,804 - ECD_03437 0.57 -0.5 3,614,804 - ECD_03437 0.57 -0.3 3,614,808 - ECD_03437 0.57 +0.6 3,614,808 - ECD_03437 0.57 +0.7 3,614,808 - ECD_03437 0.57 +0.3 3,614,808 - ECD_03437 0.57 +0.0 3,614,808 - ECD_03437 0.57 +0.1 3,614,815 + ECD_03437 0.58 +0.4 3,614,820 - ECD_03437 0.58 +0.1 3,614,826 + ECD_03437 0.59 -0.0 3,614,826 + ECD_03437 0.59 +0.4 3,614,827 - ECD_03437 0.59 +0.6 3,614,827 - ECD_03437 0.59 -0.7 3,614,827 - ECD_03437 0.59 +0.2 3,614,836 + ECD_03437 0.59 +0.5 3,614,843 + ECD_03437 0.60 +1.0 3,614,939 + ECD_03437 0.67 +0.5 3,614,942 + ECD_03437 0.67 -0.7 3,614,943 - ECD_03437 0.67 -0.3 3,614,945 + ECD_03437 0.67 -0.3 3,614,945 + ECD_03437 0.67 +0.3 3,614,946 - ECD_03437 0.67 +2.9 3,614,946 - ECD_03437 0.67 +0.4 3,615,104 + ECD_03437 0.78 -2.4 3,615,105 - ECD_03437 0.78 +0.3 3,615,105 - ECD_03437 0.78 +0.3 3,615,126 + ECD_03437 0.80 +0.1 3,615,291 + -1.7 3,615,369 + -0.3 3,615,369 + +0.1 3,615,370 - -0.2 3,615,370 - -0.3 3,615,370 - +0.2 3,615,370 - +0.2 3,615,396 + +0.3 3,615,397 - +0.4 3,615,397 - +0.5 3,615,443 + -0.1 3,615,716 - ECD_03438 0.15 +0.6 3,615,753 + ECD_03438 0.17 -1.0 3,615,762 - ECD_03438 0.17 -0.7 3,615,765 + ECD_03438 0.18 -0.2 3,615,766 - ECD_03438 0.18 -0.4 3,615,766 - ECD_03438 0.18 -0.1 3,615,766 - ECD_03438 0.18 -0.1 3,615,920 + ECD_03438 0.25 +0.3 3,615,921 - ECD_03438 0.25 +1.0 3,615,932 - ECD_03438 0.26 +0.8 3,615,950 + ECD_03438 0.27 +0.6 3,615,951 - ECD_03438 0.27 +0.2 3,615,951 - ECD_03438 0.27 +0.0 3,615,951 - ECD_03438 0.27 -0.3 3,615,995 - ECD_03438 0.29 +0.7 3,616,080 + ECD_03438 0.33 +0.5 3,616,081 - ECD_03438 0.34 +1.0 3,616,081 - ECD_03438 0.34 +0.3 3,616,131 + ECD_03438 0.36 -0.2 3,616,131 + ECD_03438 0.36 -0.5 3,616,132 - ECD_03438 0.36 +0.9 3,616,220 - ECD_03438 0.41 -0.3 3,616,264 + ECD_03438 0.43 -0.2 3,616,313 + ECD_03438 0.45 -0.5 3,616,314 - ECD_03438 0.45 +0.8 3,616,330 + ECD_03438 0.46 -0.4 3,616,330 + ECD_03438 0.46 +0.7 3,616,331 - ECD_03438 0.46 -1.3 3,616,331 - ECD_03438 0.46 -0.0 3,616,332 + ECD_03438 0.46 +0.4 3,616,332 + ECD_03438 0.46 +0.1 3,616,332 + ECD_03438 0.46 +0.2 3,616,332 + ECD_03438 0.46 +0.6 3,616,333 - ECD_03438 0.46 +0.2 3,616,333 - ECD_03438 0.46 -0.1 3,616,333 - ECD_03438 0.46 +0.4 3,616,333 - ECD_03438 0.46 +1.0 3,616,333 - ECD_03438 0.46 +0.6 3,616,333 - ECD_03438 0.46 +0.5 3,616,333 - ECD_03438 0.46 -0.8 3,616,333 - ECD_03438 0.46 +1.6 3,616,333 - ECD_03438 0.46 -0.3 3,616,333 - ECD_03438 0.46 -0.5 3,616,334 + ECD_03438 0.46 +0.9 3,616,334 + ECD_03438 0.46 +0.8 3,616,334 + ECD_03438 0.46 -1.1 3,616,334 + ECD_03438 0.46 +0.6 3,616,335 - ECD_03438 0.46 -0.1 3,616,335 - ECD_03438 0.46 +0.6 3,616,337 + ECD_03438 0.46 +1.1 3,616,386 + ECD_03438 0.49 +0.4 3,616,411 - ECD_03438 0.50 +0.3 3,616,411 - ECD_03438 0.50 +0.8 3,616,485 + ECD_03438 0.54 -0.1 3,616,486 - ECD_03438 0.54 -0.2 3,616,512 + ECD_03438 0.55 +0.3 3,616,579 + ECD_03438 0.59 +0.4 3,616,580 - ECD_03438 0.59 -0.2 3,616,701 + ECD_03438 0.65 +1.0 3,616,702 - ECD_03438 0.65 -0.1 3,616,707 + ECD_03438 0.65 +2.9 3,616,708 - ECD_03438 0.65 -1.5 3,616,731 + ECD_03438 0.66 +0.3 3,616,731 + ECD_03438 0.66 -0.5 3,616,732 - ECD_03438 0.66 -0.5 3,616,734 - ECD_03438 0.67 -1.2 3,616,741 + ECD_03438 0.67 +1.1 3,616,741 + ECD_03438 0.67 +0.2 3,616,742 - ECD_03438 0.67 +0.1 3,616,742 - ECD_03438 0.67 -2.4 3,616,742 - ECD_03438 0.67 -0.0 3,616,742 - ECD_03438 0.67 +0.8 3,616,742 - ECD_03438 0.67 -0.2 3,616,742 - ECD_03438 0.67 +0.4 3,616,742 - ECD_03438 0.67 -0.5 3,616,743 + ECD_03438 0.67 -0.4 3,616,743 + ECD_03438 0.67 -0.4 3,616,743 + ECD_03438 0.67 -0.3 3,616,743 + ECD_03438 0.67 +0.6 3,616,743 + ECD_03438 0.67 +0.2 3,616,744 - ECD_03438 0.67 -1.3 3,616,744 - ECD_03438 0.67 +0.4 3,616,744 - ECD_03438 0.67 +0.1 3,616,744 - ECD_03438 0.67 +0.4 3,616,809 + ECD_03438 0.70 +1.0 3,616,858 + ECD_03438 0.73 +1.0 3,616,858 + ECD_03438 0.73 -0.0 3,616,865 + ECD_03438 0.73 +0.4 3,616,866 - ECD_03438 0.73 +0.3 3,616,866 - ECD_03438 0.73 +0.3 3,616,876 + ECD_03438 0.74 -0.2 3,616,876 + ECD_03438 0.74 -0.3 3,616,877 - ECD_03438 0.74 +0.5 3,616,877 - ECD_03438 0.74 +0.4 3,616,877 - ECD_03438 0.74 -0.7 3,616,877 - ECD_03438 0.74 +0.3 3,616,912 + ECD_03438 0.76 -0.1 3,616,912 + ECD_03438 0.76 +0.7 3,616,912 + ECD_03438 0.76 +0.3 3,616,940 + ECD_03438 0.77 -0.2 3,617,092 - ECD_03438 0.85 -0.2 3,617,263 - +0.3 3,617,327 + +0.4 3,617,458 - +1.5 3,617,458 - +0.6 3,617,466 + -0.2 3,617,466 + -0.0 3,617,467 - -0.1 3,617,467 - -0.3 3,617,549 + -0.2 3,617,561 + +0.5 3,617,585 + +0.0 3,617,629 - ECD_03439 0.15 +0.4 3,617,629 - ECD_03439 0.15 +0.2 3,617,640 + ECD_03439 0.17 +1.3 3,617,641 - ECD_03439 0.17 -0.2 3,617,641 - ECD_03439 0.17 +1.2 3,617,671 + ECD_03439 0.21 +0.3 3,617,672 - ECD_03439 0.21 +0.0 3,617,672 - ECD_03439 0.21 +0.0 3,617,744 - ECD_03439 0.31 +0.2 3,617,744 - ECD_03439 0.31 +0.3 3,617,744 - ECD_03439 0.31 +1.8 3,617,746 + ECD_03439 0.31 -0.1 3,617,746 + ECD_03439 0.31 -0.5 3,617,747 - ECD_03439 0.31 -0.3 3,617,747 - ECD_03439 0.31 +2.1 3,617,749 + ECD_03439 0.31 +0.2 3,617,749 + ECD_03439 0.31 +0.3 3,617,750 - ECD_03439 0.31 -0.2 3,617,770 + ECD_03439 0.34 +0.2 3,617,770 + ECD_03439 0.34 +1.0 3,617,771 - ECD_03439 0.34 +0.0 3,617,771 - ECD_03439 0.34 +0.3 3,617,811 + ECD_03439 0.40 -0.1 3,617,812 - ECD_03439 0.40 -0.0 3,617,836 - ECD_03439 0.43 -0.8 3,617,942 + ECD_03439 0.57 -0.1 3,617,945 + ECD_03439 0.58 +1.0 3,617,954 + ECD_03439 0.59 +0.1 3,617,955 - ECD_03439 0.59 -0.7 3,617,975 - ECD_03439 0.62 -0.2 3,618,030 - ECD_03439 0.69 +0.8 3,618,107 + ECD_03439 0.80 +0.2
Or see this region's nucleotide sequence