Strain Fitness in Escherichia coli BL21 around ECD_03368

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03367 and ECD_03368 are separated by 50 nucleotidesECD_03368 and ECD_03369 are separated by 447 nucleotides ECD_03367: ECD_03367 - cytoplasmic trehalase, at 3,530,780 to 3,532,429 _03367 ECD_03368: ECD_03368 - putative DNA-binding transcriptional response regulator, at 3,532,480 to 3,533,082 _03368 ECD_03369: ECD_03369 - LysR family putative transcriptional regulator, at 3,533,530 to 3,534,501 _03369 Position (kb) 3532 3533 3534Strain fitness (log2 ratio) -1 0 1at 3531.526 kb on + strand, within ECD_03367at 3531.527 kb on - strand, within ECD_03367at 3531.536 kb on + strand, within ECD_03367at 3531.537 kb on - strand, within ECD_03367at 3531.537 kb on - strand, within ECD_03367at 3531.574 kb on + strand, within ECD_03367at 3531.584 kb on + strand, within ECD_03367at 3531.719 kb on + strand, within ECD_03367at 3531.758 kb on + strand, within ECD_03367at 3531.759 kb on - strand, within ECD_03367at 3531.759 kb on - strand, within ECD_03367at 3531.782 kb on - strand, within ECD_03367at 3531.805 kb on + strand, within ECD_03367at 3531.980 kb on + strand, within ECD_03367at 3532.047 kb on - strand, within ECD_03367at 3532.095 kb on + strand, within ECD_03367at 3532.163 kb on - strand, within ECD_03367at 3532.185 kb on + strand, within ECD_03367at 3532.185 kb on + strand, within ECD_03367at 3532.186 kb on - strand, within ECD_03367at 3532.211 kb on - strand, within ECD_03367at 3532.217 kb on + strand, within ECD_03367at 3532.218 kb on - strand, within ECD_03367at 3532.310 kb on + strandat 3532.427 kb on + strandat 3532.431 kb on - strandat 3532.491 kb on + strandat 3532.491 kb on + strandat 3532.491 kb on + strandat 3532.492 kb on - strandat 3532.492 kb on - strandat 3532.495 kb on + strandat 3532.496 kb on - strandat 3532.564 kb on + strand, within ECD_03368at 3532.674 kb on + strand, within ECD_03368at 3532.674 kb on + strand, within ECD_03368at 3532.675 kb on - strand, within ECD_03368at 3532.738 kb on - strand, within ECD_03368at 3532.738 kb on - strand, within ECD_03368at 3532.797 kb on + strand, within ECD_03368at 3532.807 kb on - strand, within ECD_03368at 3532.816 kb on + strand, within ECD_03368at 3532.898 kb on + strand, within ECD_03368at 3532.932 kb on + strand, within ECD_03368at 3532.932 kb on + strand, within ECD_03368at 3532.933 kb on - strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.936 kb on + strand, within ECD_03368at 3532.937 kb on - strand, within ECD_03368at 3532.937 kb on - strand, within ECD_03368at 3532.970 kb on - strand, within ECD_03368at 3533.013 kb on + strand, within ECD_03368at 3533.046 kb on + strandat 3533.050 kb on + strandat 3533.075 kb on - strandat 3533.075 kb on - strandat 3533.219 kb on + strandat 3533.220 kb on - strandat 3533.220 kb on - strandat 3533.289 kb on - strandat 3533.289 kb on - strandat 3533.462 kb on + strandat 3533.568 kb on - strandat 3533.711 kb on + strand, within ECD_03369at 3533.711 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.794 kb on + strand, within ECD_03369at 3533.795 kb on - strand, within ECD_03369at 3533.795 kb on - strand, within ECD_03369at 3533.798 kb on - strand, within ECD_03369at 3533.869 kb on - strand, within ECD_03369at 3533.869 kb on - strand, within ECD_03369at 3533.883 kb on - strand, within ECD_03369at 3533.921 kb on + strand, within ECD_03369at 3533.997 kb on - strand, within ECD_03369at 3534.000 kb on + strand, within ECD_03369

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
3,531,526 + ECD_03367 0.45 +0.4
3,531,527 - ECD_03367 0.45 +0.4
3,531,536 + ECD_03367 0.46 -0.2
3,531,537 - ECD_03367 0.46 -0.7
3,531,537 - ECD_03367 0.46 +0.2
3,531,574 + ECD_03367 0.48 +0.6
3,531,584 + ECD_03367 0.49 +1.2
3,531,719 + ECD_03367 0.57 -0.3
3,531,758 + ECD_03367 0.59 +1.2
3,531,759 - ECD_03367 0.59 -0.5
3,531,759 - ECD_03367 0.59 -0.7
3,531,782 - ECD_03367 0.61 -0.1
3,531,805 + ECD_03367 0.62 -0.2
3,531,980 + ECD_03367 0.73 -0.1
3,532,047 - ECD_03367 0.77 -0.1
3,532,095 + ECD_03367 0.80 -0.1
3,532,163 - ECD_03367 0.84 +0.1
3,532,185 + ECD_03367 0.85 -0.0
3,532,185 + ECD_03367 0.85 +0.6
3,532,186 - ECD_03367 0.85 +0.7
3,532,211 - ECD_03367 0.87 -0.7
3,532,217 + ECD_03367 0.87 +0.6
3,532,218 - ECD_03367 0.87 +0.2
3,532,310 + +0.1
3,532,427 + +0.3
3,532,431 - -0.8
3,532,491 + -0.3
3,532,491 + -0.3
3,532,491 + +0.7
3,532,492 - +0.2
3,532,492 - -0.3
3,532,495 + +0.3
3,532,496 - +1.0
3,532,564 + ECD_03368 0.14 +0.3
3,532,674 + ECD_03368 0.32 +1.3
3,532,674 + ECD_03368 0.32 -0.3
3,532,675 - ECD_03368 0.32 +1.4
3,532,738 - ECD_03368 0.43 -0.3
3,532,738 - ECD_03368 0.43 -0.1
3,532,797 + ECD_03368 0.53 +0.7
3,532,807 - ECD_03368 0.54 +0.2
3,532,816 + ECD_03368 0.56 -0.5
3,532,898 + ECD_03368 0.69 +1.7
3,532,932 + ECD_03368 0.75 +0.5
3,532,932 + ECD_03368 0.75 +0.4
3,532,933 - ECD_03368 0.75 +0.4
3,532,936 + ECD_03368 0.76 +0.1
3,532,936 + ECD_03368 0.76 -1.1
3,532,936 + ECD_03368 0.76 +0.2
3,532,936 + ECD_03368 0.76 -0.2
3,532,936 + ECD_03368 0.76 +0.2
3,532,937 - ECD_03368 0.76 -0.2
3,532,937 - ECD_03368 0.76 +0.4
3,532,970 - ECD_03368 0.81 +0.6
3,533,013 + ECD_03368 0.88 +0.1
3,533,046 + +0.5
3,533,050 + +0.2
3,533,075 - -1.7
3,533,075 - +0.7
3,533,219 + +0.0
3,533,220 - +0.6
3,533,220 - +0.2
3,533,289 - -0.0
3,533,289 - -0.4
3,533,462 + +0.7
3,533,568 - +0.6
3,533,711 + ECD_03369 0.19 -0.0
3,533,711 + ECD_03369 0.19 +0.4
3,533,794 + ECD_03369 0.27 +0.6
3,533,794 + ECD_03369 0.27 +0.6
3,533,794 + ECD_03369 0.27 -0.8
3,533,794 + ECD_03369 0.27 +1.3
3,533,795 - ECD_03369 0.27 +0.5
3,533,795 - ECD_03369 0.27 +1.2
3,533,798 - ECD_03369 0.28 +0.6
3,533,869 - ECD_03369 0.35 -0.6
3,533,869 - ECD_03369 0.35 -0.3
3,533,883 - ECD_03369 0.36 -0.7
3,533,921 + ECD_03369 0.40 +1.0
3,533,997 - ECD_03369 0.48 +0.6
3,534,000 + ECD_03369 0.48 +0.4

Or see this region's nucleotide sequence