Strain Fitness in Escherichia coli BL21 around ECD_03341

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03340 and ECD_03341 are separated by 314 nucleotidesECD_03341 and ECD_03342 are separated by 231 nucleotides ECD_03340: ECD_03340 - acid resistance protein, inner membrane, at 3,497,226 to 3,498,278 _03340 ECD_03341: ECD_03341 - putative oxidoreductase, at 3,498,593 to 3,499,795 _03341 ECD_03342: ECD_03342 - phosphate transporter, low-affinity; tellurite importer, at 3,500,027 to 3,501,526 _03342 Position (kb) 3498 3499 3500Strain fitness (log2 ratio) -2 -1 0 1at 3497.677 kb on - strand, within ECD_03340at 3497.677 kb on - strand, within ECD_03340at 3497.747 kb on + strand, within ECD_03340at 3497.759 kb on - strand, within ECD_03340at 3497.759 kb on - strand, within ECD_03340at 3497.759 kb on - strand, within ECD_03340at 3497.763 kb on - strand, within ECD_03340at 3497.774 kb on - strand, within ECD_03340at 3497.784 kb on + strand, within ECD_03340at 3497.801 kb on - strand, within ECD_03340at 3497.833 kb on + strand, within ECD_03340at 3497.870 kb on + strand, within ECD_03340at 3497.951 kb on - strand, within ECD_03340at 3497.952 kb on + strand, within ECD_03340at 3497.952 kb on + strand, within ECD_03340at 3497.952 kb on + strand, within ECD_03340at 3497.953 kb on - strand, within ECD_03340at 3497.999 kb on + strand, within ECD_03340at 3498.006 kb on - strand, within ECD_03340at 3498.074 kb on + strand, within ECD_03340at 3498.075 kb on - strand, within ECD_03340at 3498.228 kb on - strandat 3498.228 kb on - strandat 3498.349 kb on - strandat 3498.360 kb on - strandat 3498.419 kb on - strandat 3498.473 kb on + strandat 3498.474 kb on - strandat 3498.474 kb on - strandat 3498.474 kb on - strandat 3498.529 kb on - strandat 3498.529 kb on - strandat 3498.569 kb on + strandat 3498.589 kb on + strandat 3498.662 kb on - strandat 3498.664 kb on - strandat 3498.664 kb on - strandat 3498.708 kb on + strandat 3498.708 kb on + strandat 3498.709 kb on - strandat 3498.818 kb on + strand, within ECD_03341at 3498.819 kb on - strand, within ECD_03341at 3498.935 kb on + strand, within ECD_03341at 3499.092 kb on - strand, within ECD_03341at 3499.112 kb on + strand, within ECD_03341at 3499.184 kb on + strand, within ECD_03341at 3499.185 kb on - strand, within ECD_03341at 3499.273 kb on + strand, within ECD_03341at 3499.273 kb on + strand, within ECD_03341at 3499.273 kb on + strand, within ECD_03341at 3499.274 kb on - strand, within ECD_03341at 3499.274 kb on - strand, within ECD_03341at 3499.411 kb on + strand, within ECD_03341at 3499.565 kb on - strand, within ECD_03341at 3499.612 kb on - strand, within ECD_03341at 3499.630 kb on - strand, within ECD_03341at 3499.630 kb on - strand, within ECD_03341at 3499.667 kb on - strand, within ECD_03341at 3499.691 kb on - strandat 3499.770 kb on - strandat 3499.771 kb on + strandat 3499.771 kb on + strandat 3499.772 kb on - strandat 3499.774 kb on + strandat 3499.774 kb on + strandat 3499.775 kb on - strandat 3499.864 kb on - strandat 3499.867 kb on - strandat 3499.870 kb on - strandat 3500.026 kb on + strandat 3500.031 kb on + strandat 3500.031 kb on + strandat 3500.032 kb on - strandat 3500.032 kb on - strandat 3500.156 kb on + strandat 3500.157 kb on - strandat 3500.157 kb on - strandat 3500.157 kb on - strandat 3500.246 kb on + strand, within ECD_03342at 3500.247 kb on - strand, within ECD_03342at 3500.260 kb on + strand, within ECD_03342at 3500.260 kb on + strand, within ECD_03342at 3500.260 kb on + strand, within ECD_03342at 3500.287 kb on + strand, within ECD_03342at 3500.323 kb on + strand, within ECD_03342at 3500.323 kb on + strand, within ECD_03342at 3500.323 kb on + strand, within ECD_03342at 3500.363 kb on + strand, within ECD_03342at 3500.659 kb on + strand, within ECD_03342at 3500.737 kb on + strand, within ECD_03342at 3500.737 kb on + strand, within ECD_03342at 3500.738 kb on - strand, within ECD_03342at 3500.738 kb on - strand, within ECD_03342

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,497,677 - ECD_03340 0.43 -0.1
3,497,677 - ECD_03340 0.43 -1.8
3,497,747 + ECD_03340 0.49 +0.3
3,497,759 - ECD_03340 0.51 +0.2
3,497,759 - ECD_03340 0.51 +1.7
3,497,759 - ECD_03340 0.51 +0.4
3,497,763 - ECD_03340 0.51 -1.2
3,497,774 - ECD_03340 0.52 +0.1
3,497,784 + ECD_03340 0.53 +0.6
3,497,801 - ECD_03340 0.55 +1.0
3,497,833 + ECD_03340 0.58 -0.3
3,497,870 + ECD_03340 0.61 +0.7
3,497,951 - ECD_03340 0.69 +0.3
3,497,952 + ECD_03340 0.69 -0.2
3,497,952 + ECD_03340 0.69 +0.7
3,497,952 + ECD_03340 0.69 -1.0
3,497,953 - ECD_03340 0.69 -0.2
3,497,999 + ECD_03340 0.73 +0.3
3,498,006 - ECD_03340 0.74 +0.4
3,498,074 + ECD_03340 0.81 +0.1
3,498,075 - ECD_03340 0.81 +0.0
3,498,228 - -0.1
3,498,228 - +1.1
3,498,349 - -0.4
3,498,360 - -0.3
3,498,419 - -0.2
3,498,473 + -1.5
3,498,474 - -0.7
3,498,474 - +0.3
3,498,474 - +0.1
3,498,529 - +0.4
3,498,529 - +1.1
3,498,569 + +0.2
3,498,589 + -1.4
3,498,662 - +0.4
3,498,664 - +0.8
3,498,664 - -0.6
3,498,708 + +0.0
3,498,708 + +0.0
3,498,709 - -1.1
3,498,818 + ECD_03341 0.19 -0.5
3,498,819 - ECD_03341 0.19 -0.9
3,498,935 + ECD_03341 0.28 +0.3
3,499,092 - ECD_03341 0.41 -1.4
3,499,112 + ECD_03341 0.43 -1.0
3,499,184 + ECD_03341 0.49 +0.9
3,499,185 - ECD_03341 0.49 -1.3
3,499,273 + ECD_03341 0.57 +0.7
3,499,273 + ECD_03341 0.57 -0.1
3,499,273 + ECD_03341 0.57 -0.0
3,499,274 - ECD_03341 0.57 -2.6
3,499,274 - ECD_03341 0.57 -0.3
3,499,411 + ECD_03341 0.68 -0.7
3,499,565 - ECD_03341 0.81 -0.0
3,499,612 - ECD_03341 0.85 -0.5
3,499,630 - ECD_03341 0.86 +0.1
3,499,630 - ECD_03341 0.86 -0.1
3,499,667 - ECD_03341 0.89 -0.0
3,499,691 - +0.9
3,499,770 - +0.9
3,499,771 + -1.1
3,499,771 + -0.6
3,499,772 - +0.1
3,499,774 + -0.1
3,499,774 + +0.7
3,499,775 - -1.3
3,499,864 - +0.5
3,499,867 - +0.6
3,499,870 - +0.6
3,500,026 + +1.5
3,500,031 + +0.4
3,500,031 + +1.7
3,500,032 - -0.7
3,500,032 - +0.7
3,500,156 + +0.7
3,500,157 - +1.3
3,500,157 - +0.9
3,500,157 - +0.7
3,500,246 + ECD_03342 0.15 +0.5
3,500,247 - ECD_03342 0.15 +0.3
3,500,260 + ECD_03342 0.16 +0.7
3,500,260 + ECD_03342 0.16 +1.7
3,500,260 + ECD_03342 0.16 +1.0
3,500,287 + ECD_03342 0.17 -0.6
3,500,323 + ECD_03342 0.20 +1.4
3,500,323 + ECD_03342 0.20 -0.3
3,500,323 + ECD_03342 0.20 -0.3
3,500,363 + ECD_03342 0.22 +0.9
3,500,659 + ECD_03342 0.42 +0.5
3,500,737 + ECD_03342 0.47 -0.1
3,500,737 + ECD_03342 0.47 +1.7
3,500,738 - ECD_03342 0.47 +1.7
3,500,738 - ECD_03342 0.47 +0.3

Or see this region's nucleotide sequence