Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03340 and ECD_03341 are separated by 314 nucleotides ECD_03341 and ECD_03342 are separated by 231 nucleotides
ECD_03340: ECD_03340 - acid resistance protein, inner membrane, at 3,497,226 to 3,498,278
_03340
ECD_03341: ECD_03341 - putative oxidoreductase, at 3,498,593 to 3,499,795
_03341
ECD_03342: ECD_03342 - phosphate transporter, low-affinity; tellurite importer, at 3,500,027 to 3,501,526
_03342
Position (kb)
3498
3499
3500 Strain fitness (log2 ratio)
-2
-1
0
1 at 3497.677 kb on - strand, within ECD_03340 at 3497.677 kb on - strand, within ECD_03340 at 3497.747 kb on + strand, within ECD_03340 at 3497.759 kb on - strand, within ECD_03340 at 3497.759 kb on - strand, within ECD_03340 at 3497.759 kb on - strand, within ECD_03340 at 3497.763 kb on - strand, within ECD_03340 at 3497.774 kb on - strand, within ECD_03340 at 3497.784 kb on + strand, within ECD_03340 at 3497.801 kb on - strand, within ECD_03340 at 3497.833 kb on + strand, within ECD_03340 at 3497.870 kb on + strand, within ECD_03340 at 3497.951 kb on - strand, within ECD_03340 at 3497.952 kb on + strand, within ECD_03340 at 3497.952 kb on + strand, within ECD_03340 at 3497.952 kb on + strand, within ECD_03340 at 3497.953 kb on - strand, within ECD_03340 at 3497.999 kb on + strand, within ECD_03340 at 3498.006 kb on - strand, within ECD_03340 at 3498.074 kb on + strand, within ECD_03340 at 3498.075 kb on - strand, within ECD_03340 at 3498.228 kb on - strand at 3498.228 kb on - strand at 3498.349 kb on - strand at 3498.360 kb on - strand at 3498.419 kb on - strand at 3498.473 kb on + strand at 3498.474 kb on - strand at 3498.474 kb on - strand at 3498.474 kb on - strand at 3498.529 kb on - strand at 3498.529 kb on - strand at 3498.569 kb on + strand at 3498.589 kb on + strand at 3498.662 kb on - strand at 3498.664 kb on - strand at 3498.664 kb on - strand at 3498.708 kb on + strand at 3498.708 kb on + strand at 3498.709 kb on - strand at 3498.818 kb on + strand, within ECD_03341 at 3498.819 kb on - strand, within ECD_03341 at 3498.935 kb on + strand, within ECD_03341 at 3499.092 kb on - strand, within ECD_03341 at 3499.112 kb on + strand, within ECD_03341 at 3499.184 kb on + strand, within ECD_03341 at 3499.185 kb on - strand, within ECD_03341 at 3499.273 kb on + strand, within ECD_03341 at 3499.273 kb on + strand, within ECD_03341 at 3499.273 kb on + strand, within ECD_03341 at 3499.274 kb on - strand, within ECD_03341 at 3499.274 kb on - strand, within ECD_03341 at 3499.411 kb on + strand, within ECD_03341 at 3499.565 kb on - strand, within ECD_03341 at 3499.612 kb on - strand, within ECD_03341 at 3499.630 kb on - strand, within ECD_03341 at 3499.630 kb on - strand, within ECD_03341 at 3499.667 kb on - strand, within ECD_03341 at 3499.691 kb on - strand at 3499.770 kb on - strand at 3499.771 kb on + strand at 3499.771 kb on + strand at 3499.772 kb on - strand at 3499.774 kb on + strand at 3499.774 kb on + strand at 3499.775 kb on - strand at 3499.864 kb on - strand at 3499.867 kb on - strand at 3499.870 kb on - strand at 3500.026 kb on + strand at 3500.031 kb on + strand at 3500.031 kb on + strand at 3500.032 kb on - strand at 3500.032 kb on - strand at 3500.156 kb on + strand at 3500.157 kb on - strand at 3500.157 kb on - strand at 3500.157 kb on - strand at 3500.246 kb on + strand, within ECD_03342 at 3500.247 kb on - strand, within ECD_03342 at 3500.260 kb on + strand, within ECD_03342 at 3500.260 kb on + strand, within ECD_03342 at 3500.260 kb on + strand, within ECD_03342 at 3500.287 kb on + strand, within ECD_03342 at 3500.323 kb on + strand, within ECD_03342 at 3500.323 kb on + strand, within ECD_03342 at 3500.323 kb on + strand, within ECD_03342 at 3500.363 kb on + strand, within ECD_03342 at 3500.659 kb on + strand, within ECD_03342 at 3500.737 kb on + strand, within ECD_03342 at 3500.737 kb on + strand, within ECD_03342 at 3500.738 kb on - strand, within ECD_03342 at 3500.738 kb on - strand, within ECD_03342
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,497,677 - ECD_03340 0.43 -0.1 3,497,677 - ECD_03340 0.43 -1.8 3,497,747 + ECD_03340 0.49 +0.3 3,497,759 - ECD_03340 0.51 +0.2 3,497,759 - ECD_03340 0.51 +1.7 3,497,759 - ECD_03340 0.51 +0.4 3,497,763 - ECD_03340 0.51 -1.2 3,497,774 - ECD_03340 0.52 +0.1 3,497,784 + ECD_03340 0.53 +0.6 3,497,801 - ECD_03340 0.55 +1.0 3,497,833 + ECD_03340 0.58 -0.3 3,497,870 + ECD_03340 0.61 +0.7 3,497,951 - ECD_03340 0.69 +0.3 3,497,952 + ECD_03340 0.69 -0.2 3,497,952 + ECD_03340 0.69 +0.7 3,497,952 + ECD_03340 0.69 -1.0 3,497,953 - ECD_03340 0.69 -0.2 3,497,999 + ECD_03340 0.73 +0.3 3,498,006 - ECD_03340 0.74 +0.4 3,498,074 + ECD_03340 0.81 +0.1 3,498,075 - ECD_03340 0.81 +0.0 3,498,228 - -0.1 3,498,228 - +1.1 3,498,349 - -0.4 3,498,360 - -0.3 3,498,419 - -0.2 3,498,473 + -1.5 3,498,474 - -0.7 3,498,474 - +0.3 3,498,474 - +0.1 3,498,529 - +0.4 3,498,529 - +1.1 3,498,569 + +0.2 3,498,589 + -1.4 3,498,662 - +0.4 3,498,664 - +0.8 3,498,664 - -0.6 3,498,708 + +0.0 3,498,708 + +0.0 3,498,709 - -1.1 3,498,818 + ECD_03341 0.19 -0.5 3,498,819 - ECD_03341 0.19 -0.9 3,498,935 + ECD_03341 0.28 +0.3 3,499,092 - ECD_03341 0.41 -1.4 3,499,112 + ECD_03341 0.43 -1.0 3,499,184 + ECD_03341 0.49 +0.9 3,499,185 - ECD_03341 0.49 -1.3 3,499,273 + ECD_03341 0.57 +0.7 3,499,273 + ECD_03341 0.57 -0.1 3,499,273 + ECD_03341 0.57 -0.0 3,499,274 - ECD_03341 0.57 -2.6 3,499,274 - ECD_03341 0.57 -0.3 3,499,411 + ECD_03341 0.68 -0.7 3,499,565 - ECD_03341 0.81 -0.0 3,499,612 - ECD_03341 0.85 -0.5 3,499,630 - ECD_03341 0.86 +0.1 3,499,630 - ECD_03341 0.86 -0.1 3,499,667 - ECD_03341 0.89 -0.0 3,499,691 - +0.9 3,499,770 - +0.9 3,499,771 + -1.1 3,499,771 + -0.6 3,499,772 - +0.1 3,499,774 + -0.1 3,499,774 + +0.7 3,499,775 - -1.3 3,499,864 - +0.5 3,499,867 - +0.6 3,499,870 - +0.6 3,500,026 + +1.5 3,500,031 + +0.4 3,500,031 + +1.7 3,500,032 - -0.7 3,500,032 - +0.7 3,500,156 + +0.7 3,500,157 - +1.3 3,500,157 - +0.9 3,500,157 - +0.7 3,500,246 + ECD_03342 0.15 +0.5 3,500,247 - ECD_03342 0.15 +0.3 3,500,260 + ECD_03342 0.16 +0.7 3,500,260 + ECD_03342 0.16 +1.7 3,500,260 + ECD_03342 0.16 +1.0 3,500,287 + ECD_03342 0.17 -0.6 3,500,323 + ECD_03342 0.20 +1.4 3,500,323 + ECD_03342 0.20 -0.3 3,500,323 + ECD_03342 0.20 -0.3 3,500,363 + ECD_03342 0.22 +0.9 3,500,659 + ECD_03342 0.42 +0.5 3,500,737 + ECD_03342 0.47 -0.1 3,500,737 + ECD_03342 0.47 +1.7 3,500,738 - ECD_03342 0.47 +1.7 3,500,738 - ECD_03342 0.47 +0.3
Or see this region's nucleotide sequence