Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03302 and ECD_03303 are separated by 396 nucleotides ECD_03303 and ECD_03304 are separated by 1 nucleotides ECD_03304 and ECD_03305 overlap by 4 nucleotides
ECD_03302: ECD_03302 - sn-glycerol-3-phosphate ABC transporter periplasmic binding protein, at 3,453,381 to 3,454,697
_03302
ECD_03303: ECD_03303 - branched-chain amino acid ABC transporter ATPase, at 3,455,094 to 3,455,807
_03303
ECD_03304: ECD_03304 - branched-chain amino acid ABC transporter ATPase, at 3,455,809 to 3,456,576
_03304
ECD_03305: ECD_03305 - branched-chain amino acid ABC transporter permease, at 3,456,573 to 3,457,850
_03305
Position (kb)
3455
3456 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3454.174 kb on + strand, within ECD_03302 at 3454.175 kb on - strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.249 kb on + strand, within ECD_03302 at 3454.250 kb on - strand, within ECD_03302 at 3454.252 kb on + strand, within ECD_03302 at 3454.253 kb on - strand, within ECD_03302 at 3454.253 kb on - strand, within ECD_03302 at 3454.290 kb on + strand, within ECD_03302 at 3454.291 kb on - strand, within ECD_03302 at 3454.316 kb on - strand, within ECD_03302 at 3454.316 kb on - strand, within ECD_03302 at 3454.318 kb on + strand, within ECD_03302 at 3454.373 kb on + strand, within ECD_03302 at 3454.374 kb on - strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.384 kb on + strand, within ECD_03302 at 3454.386 kb on + strand, within ECD_03302 at 3454.386 kb on + strand, within ECD_03302 at 3454.394 kb on + strand, within ECD_03302 at 3454.436 kb on - strand, within ECD_03302 at 3454.505 kb on - strand, within ECD_03302 at 3454.514 kb on + strand, within ECD_03302 at 3454.514 kb on + strand, within ECD_03302 at 3454.514 kb on + strand, within ECD_03302 at 3454.515 kb on - strand, within ECD_03302 at 3454.516 kb on + strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.517 kb on - strand, within ECD_03302 at 3454.601 kb on + strand at 3454.679 kb on + strand at 3454.680 kb on - strand at 3454.680 kb on - strand at 3454.680 kb on - strand at 3454.681 kb on + strand at 3454.681 kb on + strand at 3454.742 kb on + strand at 3454.809 kb on + strand at 3454.809 kb on + strand at 3454.809 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.812 kb on + strand at 3454.813 kb on - strand at 3454.813 kb on - strand at 3454.813 kb on - strand at 3454.912 kb on + strand at 3454.920 kb on - strand at 3454.988 kb on + strand at 3454.988 kb on + strand at 3455.092 kb on + strand at 3455.093 kb on - strand at 3455.095 kb on + strand at 3455.240 kb on + strand, within ECD_03303 at 3455.240 kb on + strand, within ECD_03303 at 3455.240 kb on + strand, within ECD_03303 at 3455.240 kb on + strand, within ECD_03303 at 3455.241 kb on - strand, within ECD_03303 at 3455.446 kb on + strand, within ECD_03303 at 3455.446 kb on + strand, within ECD_03303 at 3455.446 kb on + strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.447 kb on - strand, within ECD_03303 at 3455.457 kb on + strand, within ECD_03303 at 3455.609 kb on + strand, within ECD_03303 at 3455.655 kb on + strand, within ECD_03303 at 3455.656 kb on - strand, within ECD_03303 at 3455.660 kb on + strand, within ECD_03303 at 3455.810 kb on + strand at 3455.810 kb on + strand at 3455.811 kb on - strand at 3455.811 kb on - strand at 3455.821 kb on + strand at 3455.821 kb on + strand at 3455.821 kb on + strand at 3455.821 kb on + strand at 3455.825 kb on + strand at 3455.847 kb on + strand at 3455.903 kb on + strand, within ECD_03304 at 3455.904 kb on - strand, within ECD_03304 at 3455.938 kb on - strand, within ECD_03304 at 3456.110 kb on + strand, within ECD_03304 at 3456.110 kb on + strand, within ECD_03304 at 3456.120 kb on + strand, within ECD_03304 at 3456.121 kb on - strand, within ECD_03304 at 3456.413 kb on + strand, within ECD_03304 at 3456.491 kb on + strand, within ECD_03304 at 3456.559 kb on + strand at 3456.560 kb on - strand at 3456.560 kb on - strand at 3456.560 kb on - strand at 3456.562 kb on + strand at 3456.563 kb on - strand at 3456.563 kb on - strand at 3456.688 kb on - strand at 3456.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,454,174 + ECD_03302 0.60 -0.4 3,454,175 - ECD_03302 0.60 +0.6 3,454,249 + ECD_03302 0.66 -1.9 3,454,249 + ECD_03302 0.66 +0.5 3,454,249 + ECD_03302 0.66 +0.6 3,454,250 - ECD_03302 0.66 -1.1 3,454,252 + ECD_03302 0.66 -0.1 3,454,253 - ECD_03302 0.66 +0.0 3,454,253 - ECD_03302 0.66 +1.5 3,454,290 + ECD_03302 0.69 +0.3 3,454,291 - ECD_03302 0.69 -0.2 3,454,316 - ECD_03302 0.71 +0.1 3,454,316 - ECD_03302 0.71 +0.6 3,454,318 + ECD_03302 0.71 -0.4 3,454,373 + ECD_03302 0.75 +2.7 3,454,374 - ECD_03302 0.75 +0.5 3,454,384 + ECD_03302 0.76 -0.1 3,454,384 + ECD_03302 0.76 +0.4 3,454,384 + ECD_03302 0.76 +0.4 3,454,384 + ECD_03302 0.76 -0.5 3,454,386 + ECD_03302 0.76 +0.7 3,454,386 + ECD_03302 0.76 -2.2 3,454,394 + ECD_03302 0.77 +0.0 3,454,436 - ECD_03302 0.80 -1.5 3,454,505 - ECD_03302 0.85 -0.6 3,454,514 + ECD_03302 0.86 +0.4 3,454,514 + ECD_03302 0.86 -0.4 3,454,514 + ECD_03302 0.86 +1.6 3,454,515 - ECD_03302 0.86 -0.7 3,454,516 + ECD_03302 0.86 -0.1 3,454,517 - ECD_03302 0.86 +0.6 3,454,517 - ECD_03302 0.86 -0.3 3,454,517 - ECD_03302 0.86 -0.2 3,454,517 - ECD_03302 0.86 +0.1 3,454,601 + +0.3 3,454,679 + +0.5 3,454,680 - -0.1 3,454,680 - +0.0 3,454,680 - +0.5 3,454,681 + -0.2 3,454,681 + +0.5 3,454,742 + -0.1 3,454,809 + -0.0 3,454,809 + +0.7 3,454,809 + -0.5 3,454,812 + +0.4 3,454,812 + -1.2 3,454,812 + +0.2 3,454,812 + +1.1 3,454,812 + -0.6 3,454,813 - -0.8 3,454,813 - -0.1 3,454,813 - -0.4 3,454,912 + +0.2 3,454,920 - -0.2 3,454,988 + -0.2 3,454,988 + -0.4 3,455,092 + -0.2 3,455,093 - -0.0 3,455,095 + +0.1 3,455,240 + ECD_03303 0.20 +0.1 3,455,240 + ECD_03303 0.20 +0.2 3,455,240 + ECD_03303 0.20 -1.6 3,455,240 + ECD_03303 0.20 +2.5 3,455,241 - ECD_03303 0.21 -0.5 3,455,446 + ECD_03303 0.49 -0.1 3,455,446 + ECD_03303 0.49 +0.1 3,455,446 + ECD_03303 0.49 +0.1 3,455,447 - ECD_03303 0.49 +1.6 3,455,447 - ECD_03303 0.49 -0.2 3,455,447 - ECD_03303 0.49 -0.2 3,455,447 - ECD_03303 0.49 +0.5 3,455,447 - ECD_03303 0.49 +0.1 3,455,447 - ECD_03303 0.49 -0.4 3,455,447 - ECD_03303 0.49 +0.5 3,455,457 + ECD_03303 0.51 +0.9 3,455,609 + ECD_03303 0.72 +0.4 3,455,655 + ECD_03303 0.79 +2.0 3,455,656 - ECD_03303 0.79 +0.4 3,455,660 + ECD_03303 0.79 -0.2 3,455,810 + -0.6 3,455,810 + +0.1 3,455,811 - +0.2 3,455,811 - +1.4 3,455,821 + +0.5 3,455,821 + +0.4 3,455,821 + +0.1 3,455,821 + -2.3 3,455,825 + -1.2 3,455,847 + +0.9 3,455,903 + ECD_03304 0.12 -0.1 3,455,904 - ECD_03304 0.12 +0.5 3,455,938 - ECD_03304 0.17 -0.7 3,456,110 + ECD_03304 0.39 -1.3 3,456,110 + ECD_03304 0.39 +0.5 3,456,120 + ECD_03304 0.40 +0.8 3,456,121 - ECD_03304 0.41 -0.5 3,456,413 + ECD_03304 0.79 +0.9 3,456,491 + ECD_03304 0.89 -0.3 3,456,559 + -0.2 3,456,560 - +0.1 3,456,560 - -0.4 3,456,560 - +0.1 3,456,562 + -0.0 3,456,563 - +0.4 3,456,563 - +2.6 3,456,688 - +0.4 3,456,698 - -1.0
Or see this region's nucleotide sequence