Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03207 and ECD_03208 are separated by 301 nucleotides ECD_03208 and ECD_03209 are separated by 38 nucleotides ECD_03209 and ECD_03210 are separated by 66 nucleotides
ECD_03207: ECD_03207 - OsmC family protein, at 3,345,015 to 3,345,419
_03207
ECD_03208: ECD_03208 - cAMP-activated global transcription factor, mediator of catabolite repression, at 3,345,721 to 3,346,353
_03208
ECD_03209: ECD_03209 - putative transporter, FUSC superfamily inner membrane protein, at 3,346,392 to 3,348,494
_03209
ECD_03210: ECD_03210 - bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase, at 3,348,561 to 3,349,781
_03210
Position (kb)
3346
3347
3348
3349 Strain fitness (log2 ratio)
-2
-1
0
1 at 3345.456 kb on + strand at 3345.462 kb on + strand at 3345.462 kb on + strand at 3345.463 kb on - strand at 3345.463 kb on - strand at 3345.542 kb on + strand at 3345.542 kb on + strand at 3345.559 kb on + strand at 3345.559 kb on + strand at 3345.564 kb on + strand at 3345.567 kb on + strand at 3345.567 kb on + strand at 3345.567 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.615 kb on + strand at 3345.702 kb on + strand at 3345.702 kb on + strand at 3345.702 kb on + strand at 3346.374 kb on - strand at 3346.440 kb on + strand at 3346.440 kb on + strand at 3346.440 kb on + strand at 3346.440 kb on + strand at 3346.440 kb on + strand at 3346.440 kb on + strand at 3346.440 kb on + strand at 3346.440 kb on + strand at 3346.441 kb on - strand at 3346.441 kb on - strand at 3346.441 kb on - strand at 3346.441 kb on - strand at 3346.441 kb on - strand at 3346.465 kb on + strand at 3346.466 kb on - strand at 3346.466 kb on - strand at 3346.466 kb on - strand at 3346.548 kb on - strand at 3346.562 kb on + strand at 3346.563 kb on - strand at 3346.563 kb on - strand at 3346.639 kb on + strand, within ECD_03209 at 3346.639 kb on + strand, within ECD_03209 at 3346.639 kb on + strand, within ECD_03209 at 3346.639 kb on + strand, within ECD_03209 at 3346.639 kb on + strand, within ECD_03209 at 3346.639 kb on + strand, within ECD_03209 at 3346.639 kb on + strand, within ECD_03209 at 3346.639 kb on + strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.640 kb on - strand, within ECD_03209 at 3346.642 kb on + strand, within ECD_03209 at 3346.643 kb on - strand, within ECD_03209 at 3346.693 kb on + strand, within ECD_03209 at 3346.785 kb on + strand, within ECD_03209 at 3346.785 kb on + strand, within ECD_03209 at 3346.785 kb on + strand, within ECD_03209 at 3346.815 kb on + strand, within ECD_03209 at 3346.816 kb on - strand, within ECD_03209 at 3346.816 kb on - strand, within ECD_03209 at 3346.816 kb on - strand, within ECD_03209 at 3346.847 kb on + strand, within ECD_03209 at 3346.927 kb on - strand, within ECD_03209 at 3346.942 kb on - strand, within ECD_03209 at 3347.048 kb on + strand, within ECD_03209 at 3347.049 kb on - strand, within ECD_03209 at 3347.077 kb on - strand, within ECD_03209 at 3347.077 kb on - strand, within ECD_03209 at 3347.126 kb on + strand, within ECD_03209 at 3347.126 kb on + strand, within ECD_03209 at 3347.195 kb on + strand, within ECD_03209 at 3347.356 kb on - strand, within ECD_03209 at 3347.406 kb on + strand, within ECD_03209 at 3347.406 kb on + strand, within ECD_03209 at 3347.407 kb on - strand, within ECD_03209 at 3347.407 kb on - strand, within ECD_03209 at 3347.407 kb on - strand, within ECD_03209 at 3347.407 kb on - strand, within ECD_03209 at 3347.419 kb on + strand, within ECD_03209 at 3347.524 kb on + strand, within ECD_03209 at 3347.524 kb on + strand, within ECD_03209 at 3347.590 kb on + strand, within ECD_03209 at 3347.713 kb on - strand, within ECD_03209 at 3347.713 kb on - strand, within ECD_03209 at 3347.799 kb on - strand, within ECD_03209 at 3347.799 kb on - strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.814 kb on - strand, within ECD_03209 at 3347.824 kb on + strand, within ECD_03209 at 3347.825 kb on - strand, within ECD_03209 at 3347.825 kb on - strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.848 kb on - strand, within ECD_03209 at 3347.848 kb on - strand, within ECD_03209 at 3347.848 kb on - strand, within ECD_03209 at 3347.887 kb on + strand, within ECD_03209 at 3347.887 kb on + strand, within ECD_03209 at 3347.974 kb on - strand, within ECD_03209 at 3348.017 kb on + strand, within ECD_03209 at 3348.018 kb on - strand, within ECD_03209 at 3348.059 kb on + strand, within ECD_03209 at 3348.059 kb on + strand, within ECD_03209 at 3348.059 kb on + strand, within ECD_03209 at 3348.060 kb on - strand, within ECD_03209 at 3348.060 kb on - strand, within ECD_03209 at 3348.060 kb on - strand, within ECD_03209 at 3348.069 kb on + strand, within ECD_03209 at 3348.069 kb on + strand, within ECD_03209 at 3348.072 kb on - strand, within ECD_03209 at 3348.072 kb on - strand, within ECD_03209 at 3348.118 kb on - strand, within ECD_03209 at 3348.128 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.171 kb on - strand, within ECD_03209 at 3348.171 kb on - strand, within ECD_03209 at 3348.171 kb on - strand, within ECD_03209 at 3348.173 kb on + strand, within ECD_03209 at 3348.174 kb on - strand, within ECD_03209 at 3348.234 kb on + strand, within ECD_03209 at 3348.234 kb on + strand, within ECD_03209 at 3348.235 kb on - strand, within ECD_03209 at 3348.239 kb on - strand, within ECD_03209 at 3348.362 kb on + strand at 3348.379 kb on + strand at 3348.380 kb on - strand at 3348.493 kb on - strand at 3348.493 kb on - strand at 3348.502 kb on + strand at 3348.558 kb on + strand at 3348.559 kb on - strand at 3348.685 kb on - strand, within ECD_03210 at 3348.706 kb on + strand, within ECD_03210 at 3348.734 kb on - strand, within ECD_03210 at 3348.734 kb on - strand, within ECD_03210 at 3348.786 kb on - strand, within ECD_03210 at 3348.789 kb on + strand, within ECD_03210 at 3348.789 kb on + strand, within ECD_03210 at 3348.790 kb on - strand, within ECD_03210 at 3348.797 kb on - strand, within ECD_03210 at 3348.920 kb on + strand, within ECD_03210 at 3349.060 kb on + strand, within ECD_03210 at 3349.060 kb on + strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.380 kb on - strand, within ECD_03210 at 3349.400 kb on + strand, within ECD_03210 at 3349.400 kb on + strand, within ECD_03210 at 3349.401 kb on - strand, within ECD_03210 at 3349.434 kb on - strand, within ECD_03210 at 3349.449 kb on - strand, within ECD_03210 at 3349.470 kb on - strand, within ECD_03210
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,345,456 + -1.6 3,345,462 + +0.5 3,345,462 + -1.1 3,345,463 - +1.2 3,345,463 - -1.9 3,345,542 + +0.4 3,345,542 + -2.2 3,345,559 + +0.0 3,345,559 + +1.1 3,345,564 + +0.8 3,345,567 + -0.5 3,345,567 + +0.2 3,345,567 + +0.1 3,345,577 + +0.1 3,345,577 + +0.0 3,345,577 + -1.4 3,345,577 + -0.2 3,345,577 + -0.9 3,345,577 + -0.2 3,345,586 + +0.0 3,345,586 + +0.5 3,345,586 + +0.1 3,345,586 + -0.5 3,345,586 + -0.6 3,345,586 + -0.3 3,345,586 + +0.2 3,345,586 + -1.0 3,345,615 + +0.7 3,345,702 + +0.3 3,345,702 + +0.3 3,345,702 + +0.5 3,346,374 - -0.1 3,346,440 + +0.1 3,346,440 + -0.3 3,346,440 + -0.4 3,346,440 + +0.9 3,346,440 + +0.8 3,346,440 + -1.5 3,346,440 + -0.5 3,346,440 + +0.1 3,346,441 - +0.9 3,346,441 - +0.4 3,346,441 - +0.7 3,346,441 - +0.1 3,346,441 - +0.0 3,346,465 + +0.1 3,346,466 - +0.2 3,346,466 - +1.0 3,346,466 - +0.2 3,346,548 - -0.5 3,346,562 + -0.7 3,346,563 - +0.2 3,346,563 - -0.0 3,346,639 + ECD_03209 0.12 -0.3 3,346,639 + ECD_03209 0.12 +0.4 3,346,639 + ECD_03209 0.12 +0.4 3,346,639 + ECD_03209 0.12 +1.2 3,346,639 + ECD_03209 0.12 +0.7 3,346,639 + ECD_03209 0.12 +0.2 3,346,639 + ECD_03209 0.12 -0.6 3,346,639 + ECD_03209 0.12 -0.9 3,346,640 - ECD_03209 0.12 -0.7 3,346,640 - ECD_03209 0.12 -0.3 3,346,640 - ECD_03209 0.12 -0.5 3,346,640 - ECD_03209 0.12 -0.1 3,346,640 - ECD_03209 0.12 +0.3 3,346,640 - ECD_03209 0.12 +1.5 3,346,640 - ECD_03209 0.12 +0.3 3,346,640 - ECD_03209 0.12 +0.8 3,346,640 - ECD_03209 0.12 -1.7 3,346,642 + ECD_03209 0.12 -0.1 3,346,643 - ECD_03209 0.12 -0.6 3,346,693 + ECD_03209 0.14 -0.9 3,346,785 + ECD_03209 0.19 +0.1 3,346,785 + ECD_03209 0.19 +0.9 3,346,785 + ECD_03209 0.19 -0.5 3,346,815 + ECD_03209 0.20 +0.7 3,346,816 - ECD_03209 0.20 -0.6 3,346,816 - ECD_03209 0.20 +0.1 3,346,816 - ECD_03209 0.20 +0.1 3,346,847 + ECD_03209 0.22 -0.6 3,346,927 - ECD_03209 0.25 -0.7 3,346,942 - ECD_03209 0.26 +0.4 3,347,048 + ECD_03209 0.31 -0.0 3,347,049 - ECD_03209 0.31 +0.1 3,347,077 - ECD_03209 0.33 -0.4 3,347,077 - ECD_03209 0.33 +1.2 3,347,126 + ECD_03209 0.35 -2.0 3,347,126 + ECD_03209 0.35 +0.7 3,347,195 + ECD_03209 0.38 -0.4 3,347,356 - ECD_03209 0.46 +0.6 3,347,406 + ECD_03209 0.48 +0.2 3,347,406 + ECD_03209 0.48 -0.8 3,347,407 - ECD_03209 0.48 -0.2 3,347,407 - ECD_03209 0.48 -0.2 3,347,407 - ECD_03209 0.48 -0.7 3,347,407 - ECD_03209 0.48 -0.2 3,347,419 + ECD_03209 0.49 -0.1 3,347,524 + ECD_03209 0.54 -0.0 3,347,524 + ECD_03209 0.54 -0.5 3,347,590 + ECD_03209 0.57 +1.7 3,347,713 - ECD_03209 0.63 -0.6 3,347,713 - ECD_03209 0.63 -0.3 3,347,799 - ECD_03209 0.67 +0.1 3,347,799 - ECD_03209 0.67 -0.3 3,347,811 + ECD_03209 0.67 +0.1 3,347,811 + ECD_03209 0.67 -0.6 3,347,811 + ECD_03209 0.67 +0.5 3,347,811 + ECD_03209 0.67 +0.5 3,347,812 - ECD_03209 0.68 -0.6 3,347,812 - ECD_03209 0.68 -1.0 3,347,812 - ECD_03209 0.68 -0.1 3,347,812 - ECD_03209 0.68 +0.3 3,347,814 - ECD_03209 0.68 -0.1 3,347,824 + ECD_03209 0.68 -0.3 3,347,825 - ECD_03209 0.68 +0.0 3,347,825 - ECD_03209 0.68 +0.4 3,347,847 + ECD_03209 0.69 -0.3 3,347,847 + ECD_03209 0.69 +1.3 3,347,847 + ECD_03209 0.69 +0.4 3,347,847 + ECD_03209 0.69 +0.5 3,347,848 - ECD_03209 0.69 -0.1 3,347,848 - ECD_03209 0.69 -1.1 3,347,848 - ECD_03209 0.69 +0.2 3,347,887 + ECD_03209 0.71 +0.6 3,347,887 + ECD_03209 0.71 +1.3 3,347,974 - ECD_03209 0.75 -1.0 3,348,017 + ECD_03209 0.77 +0.7 3,348,018 - ECD_03209 0.77 -0.4 3,348,059 + ECD_03209 0.79 +0.4 3,348,059 + ECD_03209 0.79 -0.3 3,348,059 + ECD_03209 0.79 +0.8 3,348,060 - ECD_03209 0.79 +0.7 3,348,060 - ECD_03209 0.79 -0.3 3,348,060 - ECD_03209 0.79 -0.8 3,348,069 + ECD_03209 0.80 +0.0 3,348,069 + ECD_03209 0.80 -0.3 3,348,072 - ECD_03209 0.80 +0.2 3,348,072 - ECD_03209 0.80 -1.3 3,348,118 - ECD_03209 0.82 -0.4 3,348,128 + ECD_03209 0.83 -0.5 3,348,170 + ECD_03209 0.85 +0.5 3,348,170 + ECD_03209 0.85 +0.3 3,348,170 + ECD_03209 0.85 +0.1 3,348,170 + ECD_03209 0.85 -0.2 3,348,171 - ECD_03209 0.85 +0.2 3,348,171 - ECD_03209 0.85 +0.4 3,348,171 - ECD_03209 0.85 +1.2 3,348,173 + ECD_03209 0.85 +0.7 3,348,174 - ECD_03209 0.85 +0.5 3,348,234 + ECD_03209 0.88 -0.3 3,348,234 + ECD_03209 0.88 +0.3 3,348,235 - ECD_03209 0.88 -0.4 3,348,239 - ECD_03209 0.88 -0.2 3,348,362 + -0.2 3,348,379 + +0.4 3,348,380 - -0.1 3,348,493 - +0.4 3,348,493 - -0.0 3,348,502 + -0.1 3,348,558 + +1.0 3,348,559 - +0.0 3,348,685 - ECD_03210 0.10 +0.4 3,348,706 + ECD_03210 0.12 -0.4 3,348,734 - ECD_03210 0.14 +0.4 3,348,734 - ECD_03210 0.14 -0.1 3,348,786 - ECD_03210 0.18 -0.3 3,348,789 + ECD_03210 0.19 +0.8 3,348,789 + ECD_03210 0.19 +0.1 3,348,790 - ECD_03210 0.19 +0.8 3,348,797 - ECD_03210 0.19 -1.0 3,348,920 + ECD_03210 0.29 -0.0 3,349,060 + ECD_03210 0.41 +0.7 3,349,060 + ECD_03210 0.41 -0.6 3,349,061 - ECD_03210 0.41 +1.2 3,349,061 - ECD_03210 0.41 -0.0 3,349,061 - ECD_03210 0.41 -0.6 3,349,061 - ECD_03210 0.41 +0.3 3,349,061 - ECD_03210 0.41 -0.6 3,349,380 - ECD_03210 0.67 -0.1 3,349,400 + ECD_03210 0.69 +0.1 3,349,400 + ECD_03210 0.69 +0.0 3,349,401 - ECD_03210 0.69 +0.9 3,349,434 - ECD_03210 0.71 -0.7 3,349,449 - ECD_03210 0.73 +0.8 3,349,470 - ECD_03210 0.74 +0.0
Or see this region's nucleotide sequence