Strain Fitness in Escherichia coli BL21 around ECD_03209

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03207 and ECD_03208 are separated by 301 nucleotidesECD_03208 and ECD_03209 are separated by 38 nucleotidesECD_03209 and ECD_03210 are separated by 66 nucleotides ECD_03207: ECD_03207 - OsmC family protein, at 3,345,015 to 3,345,419 _03207 ECD_03208: ECD_03208 - cAMP-activated global transcription factor, mediator of catabolite repression, at 3,345,721 to 3,346,353 _03208 ECD_03209: ECD_03209 - putative transporter, FUSC superfamily inner membrane protein, at 3,346,392 to 3,348,494 _03209 ECD_03210: ECD_03210 - bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase, at 3,348,561 to 3,349,781 _03210 Position (kb) 3346 3347 3348 3349Strain fitness (log2 ratio) -2 -1 0 1at 3345.456 kb on + strandat 3345.462 kb on + strandat 3345.462 kb on + strandat 3345.463 kb on - strandat 3345.463 kb on - strandat 3345.542 kb on + strandat 3345.542 kb on + strandat 3345.559 kb on + strandat 3345.559 kb on + strandat 3345.564 kb on + strandat 3345.567 kb on + strandat 3345.567 kb on + strandat 3345.567 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.615 kb on + strandat 3345.702 kb on + strandat 3345.702 kb on + strandat 3345.702 kb on + strandat 3346.374 kb on - strandat 3346.440 kb on + strandat 3346.440 kb on + strandat 3346.440 kb on + strandat 3346.440 kb on + strandat 3346.440 kb on + strandat 3346.440 kb on + strandat 3346.440 kb on + strandat 3346.440 kb on + strandat 3346.441 kb on - strandat 3346.441 kb on - strandat 3346.441 kb on - strandat 3346.441 kb on - strandat 3346.441 kb on - strandat 3346.465 kb on + strandat 3346.466 kb on - strandat 3346.466 kb on - strandat 3346.466 kb on - strandat 3346.548 kb on - strandat 3346.562 kb on + strandat 3346.563 kb on - strandat 3346.563 kb on - strandat 3346.639 kb on + strand, within ECD_03209at 3346.639 kb on + strand, within ECD_03209at 3346.639 kb on + strand, within ECD_03209at 3346.639 kb on + strand, within ECD_03209at 3346.639 kb on + strand, within ECD_03209at 3346.639 kb on + strand, within ECD_03209at 3346.639 kb on + strand, within ECD_03209at 3346.639 kb on + strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.640 kb on - strand, within ECD_03209at 3346.642 kb on + strand, within ECD_03209at 3346.643 kb on - strand, within ECD_03209at 3346.693 kb on + strand, within ECD_03209at 3346.785 kb on + strand, within ECD_03209at 3346.785 kb on + strand, within ECD_03209at 3346.785 kb on + strand, within ECD_03209at 3346.815 kb on + strand, within ECD_03209at 3346.816 kb on - strand, within ECD_03209at 3346.816 kb on - strand, within ECD_03209at 3346.816 kb on - strand, within ECD_03209at 3346.847 kb on + strand, within ECD_03209at 3346.927 kb on - strand, within ECD_03209at 3346.942 kb on - strand, within ECD_03209at 3347.048 kb on + strand, within ECD_03209at 3347.049 kb on - strand, within ECD_03209at 3347.077 kb on - strand, within ECD_03209at 3347.077 kb on - strand, within ECD_03209at 3347.126 kb on + strand, within ECD_03209at 3347.126 kb on + strand, within ECD_03209at 3347.195 kb on + strand, within ECD_03209at 3347.356 kb on - strand, within ECD_03209at 3347.406 kb on + strand, within ECD_03209at 3347.406 kb on + strand, within ECD_03209at 3347.407 kb on - strand, within ECD_03209at 3347.407 kb on - strand, within ECD_03209at 3347.407 kb on - strand, within ECD_03209at 3347.407 kb on - strand, within ECD_03209at 3347.419 kb on + strand, within ECD_03209at 3347.524 kb on + strand, within ECD_03209at 3347.524 kb on + strand, within ECD_03209at 3347.590 kb on + strand, within ECD_03209at 3347.713 kb on - strand, within ECD_03209at 3347.713 kb on - strand, within ECD_03209at 3347.799 kb on - strand, within ECD_03209at 3347.799 kb on - strand, within ECD_03209at 3347.811 kb on + strand, within ECD_03209at 3347.811 kb on + strand, within ECD_03209at 3347.811 kb on + strand, within ECD_03209at 3347.811 kb on + strand, within ECD_03209at 3347.812 kb on - strand, within ECD_03209at 3347.812 kb on - strand, within ECD_03209at 3347.812 kb on - strand, within ECD_03209at 3347.812 kb on - strand, within ECD_03209at 3347.814 kb on - strand, within ECD_03209at 3347.824 kb on + strand, within ECD_03209at 3347.825 kb on - strand, within ECD_03209at 3347.825 kb on - strand, within ECD_03209at 3347.847 kb on + strand, within ECD_03209at 3347.847 kb on + strand, within ECD_03209at 3347.847 kb on + strand, within ECD_03209at 3347.847 kb on + strand, within ECD_03209at 3347.848 kb on - strand, within ECD_03209at 3347.848 kb on - strand, within ECD_03209at 3347.848 kb on - strand, within ECD_03209at 3347.887 kb on + strand, within ECD_03209at 3347.887 kb on + strand, within ECD_03209at 3347.974 kb on - strand, within ECD_03209at 3348.017 kb on + strand, within ECD_03209at 3348.018 kb on - strand, within ECD_03209at 3348.059 kb on + strand, within ECD_03209at 3348.059 kb on + strand, within ECD_03209at 3348.059 kb on + strand, within ECD_03209at 3348.060 kb on - strand, within ECD_03209at 3348.060 kb on - strand, within ECD_03209at 3348.060 kb on - strand, within ECD_03209at 3348.069 kb on + strand, within ECD_03209at 3348.069 kb on + strand, within ECD_03209at 3348.072 kb on - strand, within ECD_03209at 3348.072 kb on - strand, within ECD_03209at 3348.118 kb on - strand, within ECD_03209at 3348.128 kb on + strand, within ECD_03209at 3348.170 kb on + strand, within ECD_03209at 3348.170 kb on + strand, within ECD_03209at 3348.170 kb on + strand, within ECD_03209at 3348.170 kb on + strand, within ECD_03209at 3348.171 kb on - strand, within ECD_03209at 3348.171 kb on - strand, within ECD_03209at 3348.171 kb on - strand, within ECD_03209at 3348.173 kb on + strand, within ECD_03209at 3348.174 kb on - strand, within ECD_03209at 3348.234 kb on + strand, within ECD_03209at 3348.234 kb on + strand, within ECD_03209at 3348.235 kb on - strand, within ECD_03209at 3348.239 kb on - strand, within ECD_03209at 3348.362 kb on + strandat 3348.379 kb on + strandat 3348.380 kb on - strandat 3348.493 kb on - strandat 3348.493 kb on - strandat 3348.502 kb on + strandat 3348.558 kb on + strandat 3348.559 kb on - strandat 3348.685 kb on - strand, within ECD_03210at 3348.706 kb on + strand, within ECD_03210at 3348.734 kb on - strand, within ECD_03210at 3348.734 kb on - strand, within ECD_03210at 3348.786 kb on - strand, within ECD_03210at 3348.789 kb on + strand, within ECD_03210at 3348.789 kb on + strand, within ECD_03210at 3348.790 kb on - strand, within ECD_03210at 3348.797 kb on - strand, within ECD_03210at 3348.920 kb on + strand, within ECD_03210at 3349.060 kb on + strand, within ECD_03210at 3349.060 kb on + strand, within ECD_03210at 3349.061 kb on - strand, within ECD_03210at 3349.061 kb on - strand, within ECD_03210at 3349.061 kb on - strand, within ECD_03210at 3349.061 kb on - strand, within ECD_03210at 3349.061 kb on - strand, within ECD_03210at 3349.380 kb on - strand, within ECD_03210at 3349.400 kb on + strand, within ECD_03210at 3349.400 kb on + strand, within ECD_03210at 3349.401 kb on - strand, within ECD_03210at 3349.434 kb on - strand, within ECD_03210at 3349.449 kb on - strand, within ECD_03210at 3349.470 kb on - strand, within ECD_03210

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,345,456 + -1.6
3,345,462 + +0.5
3,345,462 + -1.1
3,345,463 - +1.2
3,345,463 - -1.9
3,345,542 + +0.4
3,345,542 + -2.2
3,345,559 + +0.0
3,345,559 + +1.1
3,345,564 + +0.8
3,345,567 + -0.5
3,345,567 + +0.2
3,345,567 + +0.1
3,345,577 + +0.1
3,345,577 + +0.0
3,345,577 + -1.4
3,345,577 + -0.2
3,345,577 + -0.9
3,345,577 + -0.2
3,345,586 + +0.0
3,345,586 + +0.5
3,345,586 + +0.1
3,345,586 + -0.5
3,345,586 + -0.6
3,345,586 + -0.3
3,345,586 + +0.2
3,345,586 + -1.0
3,345,615 + +0.7
3,345,702 + +0.3
3,345,702 + +0.3
3,345,702 + +0.5
3,346,374 - -0.1
3,346,440 + +0.1
3,346,440 + -0.3
3,346,440 + -0.4
3,346,440 + +0.9
3,346,440 + +0.8
3,346,440 + -1.5
3,346,440 + -0.5
3,346,440 + +0.1
3,346,441 - +0.9
3,346,441 - +0.4
3,346,441 - +0.7
3,346,441 - +0.1
3,346,441 - +0.0
3,346,465 + +0.1
3,346,466 - +0.2
3,346,466 - +1.0
3,346,466 - +0.2
3,346,548 - -0.5
3,346,562 + -0.7
3,346,563 - +0.2
3,346,563 - -0.0
3,346,639 + ECD_03209 0.12 -0.3
3,346,639 + ECD_03209 0.12 +0.4
3,346,639 + ECD_03209 0.12 +0.4
3,346,639 + ECD_03209 0.12 +1.2
3,346,639 + ECD_03209 0.12 +0.7
3,346,639 + ECD_03209 0.12 +0.2
3,346,639 + ECD_03209 0.12 -0.6
3,346,639 + ECD_03209 0.12 -0.9
3,346,640 - ECD_03209 0.12 -0.7
3,346,640 - ECD_03209 0.12 -0.3
3,346,640 - ECD_03209 0.12 -0.5
3,346,640 - ECD_03209 0.12 -0.1
3,346,640 - ECD_03209 0.12 +0.3
3,346,640 - ECD_03209 0.12 +1.5
3,346,640 - ECD_03209 0.12 +0.3
3,346,640 - ECD_03209 0.12 +0.8
3,346,640 - ECD_03209 0.12 -1.7
3,346,642 + ECD_03209 0.12 -0.1
3,346,643 - ECD_03209 0.12 -0.6
3,346,693 + ECD_03209 0.14 -0.9
3,346,785 + ECD_03209 0.19 +0.1
3,346,785 + ECD_03209 0.19 +0.9
3,346,785 + ECD_03209 0.19 -0.5
3,346,815 + ECD_03209 0.20 +0.7
3,346,816 - ECD_03209 0.20 -0.6
3,346,816 - ECD_03209 0.20 +0.1
3,346,816 - ECD_03209 0.20 +0.1
3,346,847 + ECD_03209 0.22 -0.6
3,346,927 - ECD_03209 0.25 -0.7
3,346,942 - ECD_03209 0.26 +0.4
3,347,048 + ECD_03209 0.31 -0.0
3,347,049 - ECD_03209 0.31 +0.1
3,347,077 - ECD_03209 0.33 -0.4
3,347,077 - ECD_03209 0.33 +1.2
3,347,126 + ECD_03209 0.35 -2.0
3,347,126 + ECD_03209 0.35 +0.7
3,347,195 + ECD_03209 0.38 -0.4
3,347,356 - ECD_03209 0.46 +0.6
3,347,406 + ECD_03209 0.48 +0.2
3,347,406 + ECD_03209 0.48 -0.8
3,347,407 - ECD_03209 0.48 -0.2
3,347,407 - ECD_03209 0.48 -0.2
3,347,407 - ECD_03209 0.48 -0.7
3,347,407 - ECD_03209 0.48 -0.2
3,347,419 + ECD_03209 0.49 -0.1
3,347,524 + ECD_03209 0.54 -0.0
3,347,524 + ECD_03209 0.54 -0.5
3,347,590 + ECD_03209 0.57 +1.7
3,347,713 - ECD_03209 0.63 -0.6
3,347,713 - ECD_03209 0.63 -0.3
3,347,799 - ECD_03209 0.67 +0.1
3,347,799 - ECD_03209 0.67 -0.3
3,347,811 + ECD_03209 0.67 +0.1
3,347,811 + ECD_03209 0.67 -0.6
3,347,811 + ECD_03209 0.67 +0.5
3,347,811 + ECD_03209 0.67 +0.5
3,347,812 - ECD_03209 0.68 -0.6
3,347,812 - ECD_03209 0.68 -1.0
3,347,812 - ECD_03209 0.68 -0.1
3,347,812 - ECD_03209 0.68 +0.3
3,347,814 - ECD_03209 0.68 -0.1
3,347,824 + ECD_03209 0.68 -0.3
3,347,825 - ECD_03209 0.68 +0.0
3,347,825 - ECD_03209 0.68 +0.4
3,347,847 + ECD_03209 0.69 -0.3
3,347,847 + ECD_03209 0.69 +1.3
3,347,847 + ECD_03209 0.69 +0.4
3,347,847 + ECD_03209 0.69 +0.5
3,347,848 - ECD_03209 0.69 -0.1
3,347,848 - ECD_03209 0.69 -1.1
3,347,848 - ECD_03209 0.69 +0.2
3,347,887 + ECD_03209 0.71 +0.6
3,347,887 + ECD_03209 0.71 +1.3
3,347,974 - ECD_03209 0.75 -1.0
3,348,017 + ECD_03209 0.77 +0.7
3,348,018 - ECD_03209 0.77 -0.4
3,348,059 + ECD_03209 0.79 +0.4
3,348,059 + ECD_03209 0.79 -0.3
3,348,059 + ECD_03209 0.79 +0.8
3,348,060 - ECD_03209 0.79 +0.7
3,348,060 - ECD_03209 0.79 -0.3
3,348,060 - ECD_03209 0.79 -0.8
3,348,069 + ECD_03209 0.80 +0.0
3,348,069 + ECD_03209 0.80 -0.3
3,348,072 - ECD_03209 0.80 +0.2
3,348,072 - ECD_03209 0.80 -1.3
3,348,118 - ECD_03209 0.82 -0.4
3,348,128 + ECD_03209 0.83 -0.5
3,348,170 + ECD_03209 0.85 +0.5
3,348,170 + ECD_03209 0.85 +0.3
3,348,170 + ECD_03209 0.85 +0.1
3,348,170 + ECD_03209 0.85 -0.2
3,348,171 - ECD_03209 0.85 +0.2
3,348,171 - ECD_03209 0.85 +0.4
3,348,171 - ECD_03209 0.85 +1.2
3,348,173 + ECD_03209 0.85 +0.7
3,348,174 - ECD_03209 0.85 +0.5
3,348,234 + ECD_03209 0.88 -0.3
3,348,234 + ECD_03209 0.88 +0.3
3,348,235 - ECD_03209 0.88 -0.4
3,348,239 - ECD_03209 0.88 -0.2
3,348,362 + -0.2
3,348,379 + +0.4
3,348,380 - -0.1
3,348,493 - +0.4
3,348,493 - -0.0
3,348,502 + -0.1
3,348,558 + +1.0
3,348,559 - +0.0
3,348,685 - ECD_03210 0.10 +0.4
3,348,706 + ECD_03210 0.12 -0.4
3,348,734 - ECD_03210 0.14 +0.4
3,348,734 - ECD_03210 0.14 -0.1
3,348,786 - ECD_03210 0.18 -0.3
3,348,789 + ECD_03210 0.19 +0.8
3,348,789 + ECD_03210 0.19 +0.1
3,348,790 - ECD_03210 0.19 +0.8
3,348,797 - ECD_03210 0.19 -1.0
3,348,920 + ECD_03210 0.29 -0.0
3,349,060 + ECD_03210 0.41 +0.7
3,349,060 + ECD_03210 0.41 -0.6
3,349,061 - ECD_03210 0.41 +1.2
3,349,061 - ECD_03210 0.41 -0.0
3,349,061 - ECD_03210 0.41 -0.6
3,349,061 - ECD_03210 0.41 +0.3
3,349,061 - ECD_03210 0.41 -0.6
3,349,380 - ECD_03210 0.67 -0.1
3,349,400 + ECD_03210 0.69 +0.1
3,349,400 + ECD_03210 0.69 +0.0
3,349,401 - ECD_03210 0.69 +0.9
3,349,434 - ECD_03210 0.71 -0.7
3,349,449 - ECD_03210 0.73 +0.8
3,349,470 - ECD_03210 0.74 +0.0

Or see this region's nucleotide sequence