Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03198 and ECD_03199 are separated by 220 nucleotides ECD_03199 and ECD_03200 are separated by 48 nucleotides ECD_03200 and ECD_04371 are separated by 94 nucleotides ECD_04371 and ECD_03201 are separated by 9 nucleotides
ECD_03198: ECD_03198 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase), at 3,336,208 to 3,337,020
_03198
ECD_03199: ECD_03199 - phi X174 lysis protein, at 3,337,241 to 3,337,459
_03199
ECD_03200: ECD_03200 - FKBP-type peptidyl prolyl cis-trans isomerase (rotamase), at 3,337,508 to 3,338,098
_03200
ECD_04371: ECD_04371 - DUF2387 family putative metal-binding protein, at 3,338,193 to 3,338,393
_04371
ECD_03201: ECD_03201 - potassium:proton antiporter, at 3,338,403 to 3,340,208
_03201
Position (kb)
3337
3338 Strain fitness (log2 ratio)
-1
0
1
2 at 3336.292 kb on + strand, within ECD_03198 at 3336.367 kb on - strand, within ECD_03198 at 3336.427 kb on - strand, within ECD_03198 at 3336.467 kb on + strand, within ECD_03198 at 3336.468 kb on - strand, within ECD_03198 at 3336.468 kb on - strand, within ECD_03198 at 3336.487 kb on - strand, within ECD_03198 at 3336.509 kb on + strand, within ECD_03198 at 3336.510 kb on - strand, within ECD_03198 at 3336.510 kb on - strand, within ECD_03198 at 3336.510 kb on - strand, within ECD_03198 at 3336.517 kb on + strand, within ECD_03198 at 3336.518 kb on - strand, within ECD_03198 at 3336.563 kb on - strand, within ECD_03198 at 3336.563 kb on - strand, within ECD_03198 at 3336.566 kb on - strand, within ECD_03198 at 3336.630 kb on - strand, within ECD_03198 at 3336.846 kb on - strand, within ECD_03198 at 3336.846 kb on - strand, within ECD_03198 at 3336.846 kb on - strand, within ECD_03198 at 3336.872 kb on + strand, within ECD_03198 at 3336.873 kb on - strand, within ECD_03198 at 3336.924 kb on + strand, within ECD_03198 at 3337.005 kb on + strand at 3337.006 kb on - strand at 3337.024 kb on + strand at 3337.025 kb on - strand at 3337.058 kb on - strand at 3337.058 kb on - strand at 3337.061 kb on + strand at 3337.061 kb on + strand at 3337.062 kb on - strand at 3337.062 kb on - strand at 3337.062 kb on - strand at 3337.062 kb on - strand at 3337.062 kb on - strand at 3337.062 kb on - strand at 3337.075 kb on + strand at 3337.075 kb on + strand at 3337.076 kb on - strand at 3337.076 kb on - strand at 3337.078 kb on + strand at 3337.078 kb on + strand at 3337.079 kb on - strand at 3337.079 kb on - strand at 3337.079 kb on - strand at 3337.081 kb on - strand at 3337.101 kb on + strand at 3337.121 kb on + strand at 3337.121 kb on + strand at 3337.121 kb on + strand at 3337.122 kb on - strand at 3337.154 kb on + strand at 3337.252 kb on - strand at 3337.395 kb on + strand, within ECD_03199 at 3337.396 kb on - strand, within ECD_03199 at 3337.454 kb on + strand at 3337.455 kb on - strand at 3337.736 kb on - strand, within ECD_03200 at 3337.819 kb on + strand, within ECD_03200 at 3337.823 kb on + strand, within ECD_03200 at 3337.824 kb on - strand, within ECD_03200 at 3337.824 kb on - strand, within ECD_03200 at 3337.824 kb on - strand, within ECD_03200 at 3337.847 kb on - strand, within ECD_03200 at 3337.850 kb on + strand, within ECD_03200 at 3337.850 kb on + strand, within ECD_03200 at 3337.851 kb on - strand, within ECD_03200 at 3337.858 kb on + strand, within ECD_03200 at 3337.859 kb on - strand, within ECD_03200 at 3337.887 kb on + strand, within ECD_03200 at 3337.888 kb on - strand, within ECD_03200 at 3337.999 kb on - strand, within ECD_03200 at 3338.051 kb on - strand at 3338.051 kb on - strand at 3338.051 kb on - strand at 3338.051 kb on - strand at 3338.051 kb on - strand at 3338.055 kb on - strand at 3338.055 kb on - strand at 3338.061 kb on + strand at 3338.102 kb on - strand at 3338.124 kb on - strand at 3338.166 kb on + strand at 3338.166 kb on + strand at 3338.166 kb on + strand at 3338.166 kb on + strand at 3338.167 kb on - strand at 3338.167 kb on - strand at 3338.286 kb on - strand, within ECD_04371 at 3338.301 kb on - strand, within ECD_04371 at 3338.397 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,336,292 + ECD_03198 0.10 +1.7 3,336,367 - ECD_03198 0.20 -0.6 3,336,427 - ECD_03198 0.27 -0.7 3,336,467 + ECD_03198 0.32 +0.5 3,336,468 - ECD_03198 0.32 -0.0 3,336,468 - ECD_03198 0.32 +0.1 3,336,487 - ECD_03198 0.34 -0.7 3,336,509 + ECD_03198 0.37 -0.1 3,336,510 - ECD_03198 0.37 -1.1 3,336,510 - ECD_03198 0.37 -0.0 3,336,510 - ECD_03198 0.37 +0.1 3,336,517 + ECD_03198 0.38 -0.7 3,336,518 - ECD_03198 0.38 -0.9 3,336,563 - ECD_03198 0.44 -0.1 3,336,563 - ECD_03198 0.44 -0.5 3,336,566 - ECD_03198 0.44 +0.7 3,336,630 - ECD_03198 0.52 -0.6 3,336,846 - ECD_03198 0.78 -0.4 3,336,846 - ECD_03198 0.78 -0.6 3,336,846 - ECD_03198 0.78 +0.2 3,336,872 + ECD_03198 0.82 -0.6 3,336,873 - ECD_03198 0.82 -0.6 3,336,924 + ECD_03198 0.88 -1.1 3,337,005 + -0.8 3,337,006 - -0.3 3,337,024 + -0.6 3,337,025 - +0.2 3,337,058 - +0.2 3,337,058 - +0.1 3,337,061 + -0.5 3,337,061 + +0.0 3,337,062 - -0.1 3,337,062 - -0.4 3,337,062 - +0.7 3,337,062 - -0.6 3,337,062 - +1.2 3,337,062 - +0.8 3,337,075 + +0.1 3,337,075 + +0.7 3,337,076 - -0.0 3,337,076 - +0.8 3,337,078 + -0.9 3,337,078 + -0.3 3,337,079 - -0.2 3,337,079 - +0.0 3,337,079 - +0.0 3,337,081 - +0.9 3,337,101 + -0.5 3,337,121 + +0.4 3,337,121 + -1.0 3,337,121 + +0.4 3,337,122 - +1.7 3,337,154 + +0.7 3,337,252 - +0.2 3,337,395 + ECD_03199 0.70 -1.1 3,337,396 - ECD_03199 0.71 -0.2 3,337,454 + -0.2 3,337,455 - -0.3 3,337,736 - ECD_03200 0.39 -1.1 3,337,819 + ECD_03200 0.53 -0.1 3,337,823 + ECD_03200 0.53 +0.5 3,337,824 - ECD_03200 0.53 +0.5 3,337,824 - ECD_03200 0.53 +0.1 3,337,824 - ECD_03200 0.53 -1.4 3,337,847 - ECD_03200 0.57 +0.2 3,337,850 + ECD_03200 0.58 +0.3 3,337,850 + ECD_03200 0.58 -1.1 3,337,851 - ECD_03200 0.58 -1.0 3,337,858 + ECD_03200 0.59 +0.2 3,337,859 - ECD_03200 0.59 +0.0 3,337,887 + ECD_03200 0.64 -0.4 3,337,888 - ECD_03200 0.64 -0.2 3,337,999 - ECD_03200 0.83 +0.1 3,338,051 - +2.3 3,338,051 - +1.4 3,338,051 - -0.1 3,338,051 - -0.3 3,338,051 - +0.0 3,338,055 - -1.0 3,338,055 - +1.7 3,338,061 + -0.1 3,338,102 - -0.2 3,338,124 - -0.5 3,338,166 + -0.3 3,338,166 + -0.8 3,338,166 + +0.2 3,338,166 + -0.5 3,338,167 - +0.3 3,338,167 - +1.5 3,338,286 - ECD_04371 0.46 -0.0 3,338,301 - ECD_04371 0.54 +1.1 3,338,397 + +0.3
Or see this region's nucleotide sequence