Strain Fitness in Escherichia coli BL21 around ECD_03199

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03198 and ECD_03199 are separated by 220 nucleotidesECD_03199 and ECD_03200 are separated by 48 nucleotidesECD_03200 and ECD_04371 are separated by 94 nucleotidesECD_04371 and ECD_03201 are separated by 9 nucleotides ECD_03198: ECD_03198 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase), at 3,336,208 to 3,337,020 _03198 ECD_03199: ECD_03199 - phi X174 lysis protein, at 3,337,241 to 3,337,459 _03199 ECD_03200: ECD_03200 - FKBP-type peptidyl prolyl cis-trans isomerase (rotamase), at 3,337,508 to 3,338,098 _03200 ECD_04371: ECD_04371 - DUF2387 family putative metal-binding protein, at 3,338,193 to 3,338,393 _04371 ECD_03201: ECD_03201 - potassium:proton antiporter, at 3,338,403 to 3,340,208 _03201 Position (kb) 3337 3338Strain fitness (log2 ratio) -1 0 1 2at 3336.292 kb on + strand, within ECD_03198at 3336.367 kb on - strand, within ECD_03198at 3336.427 kb on - strand, within ECD_03198at 3336.467 kb on + strand, within ECD_03198at 3336.468 kb on - strand, within ECD_03198at 3336.468 kb on - strand, within ECD_03198at 3336.487 kb on - strand, within ECD_03198at 3336.509 kb on + strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.510 kb on - strand, within ECD_03198at 3336.517 kb on + strand, within ECD_03198at 3336.518 kb on - strand, within ECD_03198at 3336.563 kb on - strand, within ECD_03198at 3336.563 kb on - strand, within ECD_03198at 3336.566 kb on - strand, within ECD_03198at 3336.630 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.846 kb on - strand, within ECD_03198at 3336.872 kb on + strand, within ECD_03198at 3336.873 kb on - strand, within ECD_03198at 3336.924 kb on + strand, within ECD_03198at 3337.005 kb on + strandat 3337.006 kb on - strandat 3337.024 kb on + strandat 3337.025 kb on - strandat 3337.058 kb on - strandat 3337.058 kb on - strandat 3337.061 kb on + strandat 3337.061 kb on + strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.062 kb on - strandat 3337.075 kb on + strandat 3337.075 kb on + strandat 3337.076 kb on - strandat 3337.076 kb on - strandat 3337.078 kb on + strandat 3337.078 kb on + strandat 3337.079 kb on - strandat 3337.079 kb on - strandat 3337.079 kb on - strandat 3337.081 kb on - strandat 3337.101 kb on + strandat 3337.121 kb on + strandat 3337.121 kb on + strandat 3337.121 kb on + strandat 3337.122 kb on - strandat 3337.154 kb on + strandat 3337.252 kb on - strandat 3337.395 kb on + strand, within ECD_03199at 3337.396 kb on - strand, within ECD_03199at 3337.454 kb on + strandat 3337.455 kb on - strandat 3337.736 kb on - strand, within ECD_03200at 3337.819 kb on + strand, within ECD_03200at 3337.823 kb on + strand, within ECD_03200at 3337.824 kb on - strand, within ECD_03200at 3337.824 kb on - strand, within ECD_03200at 3337.824 kb on - strand, within ECD_03200at 3337.847 kb on - strand, within ECD_03200at 3337.850 kb on + strand, within ECD_03200at 3337.850 kb on + strand, within ECD_03200at 3337.851 kb on - strand, within ECD_03200at 3337.858 kb on + strand, within ECD_03200at 3337.859 kb on - strand, within ECD_03200at 3337.887 kb on + strand, within ECD_03200at 3337.888 kb on - strand, within ECD_03200at 3337.999 kb on - strand, within ECD_03200at 3338.051 kb on - strandat 3338.051 kb on - strandat 3338.051 kb on - strandat 3338.051 kb on - strandat 3338.051 kb on - strandat 3338.055 kb on - strandat 3338.055 kb on - strandat 3338.061 kb on + strandat 3338.102 kb on - strandat 3338.124 kb on - strandat 3338.166 kb on + strandat 3338.166 kb on + strandat 3338.166 kb on + strandat 3338.166 kb on + strandat 3338.167 kb on - strandat 3338.167 kb on - strandat 3338.286 kb on - strand, within ECD_04371at 3338.301 kb on - strand, within ECD_04371at 3338.397 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,336,292 + ECD_03198 0.10 +1.7
3,336,367 - ECD_03198 0.20 -0.6
3,336,427 - ECD_03198 0.27 -0.7
3,336,467 + ECD_03198 0.32 +0.5
3,336,468 - ECD_03198 0.32 -0.0
3,336,468 - ECD_03198 0.32 +0.1
3,336,487 - ECD_03198 0.34 -0.7
3,336,509 + ECD_03198 0.37 -0.1
3,336,510 - ECD_03198 0.37 -1.1
3,336,510 - ECD_03198 0.37 -0.0
3,336,510 - ECD_03198 0.37 +0.1
3,336,517 + ECD_03198 0.38 -0.7
3,336,518 - ECD_03198 0.38 -0.9
3,336,563 - ECD_03198 0.44 -0.1
3,336,563 - ECD_03198 0.44 -0.5
3,336,566 - ECD_03198 0.44 +0.7
3,336,630 - ECD_03198 0.52 -0.6
3,336,846 - ECD_03198 0.78 -0.4
3,336,846 - ECD_03198 0.78 -0.6
3,336,846 - ECD_03198 0.78 +0.2
3,336,872 + ECD_03198 0.82 -0.6
3,336,873 - ECD_03198 0.82 -0.6
3,336,924 + ECD_03198 0.88 -1.1
3,337,005 + -0.8
3,337,006 - -0.3
3,337,024 + -0.6
3,337,025 - +0.2
3,337,058 - +0.2
3,337,058 - +0.1
3,337,061 + -0.5
3,337,061 + +0.0
3,337,062 - -0.1
3,337,062 - -0.4
3,337,062 - +0.7
3,337,062 - -0.6
3,337,062 - +1.2
3,337,062 - +0.8
3,337,075 + +0.1
3,337,075 + +0.7
3,337,076 - -0.0
3,337,076 - +0.8
3,337,078 + -0.9
3,337,078 + -0.3
3,337,079 - -0.2
3,337,079 - +0.0
3,337,079 - +0.0
3,337,081 - +0.9
3,337,101 + -0.5
3,337,121 + +0.4
3,337,121 + -1.0
3,337,121 + +0.4
3,337,122 - +1.7
3,337,154 + +0.7
3,337,252 - +0.2
3,337,395 + ECD_03199 0.70 -1.1
3,337,396 - ECD_03199 0.71 -0.2
3,337,454 + -0.2
3,337,455 - -0.3
3,337,736 - ECD_03200 0.39 -1.1
3,337,819 + ECD_03200 0.53 -0.1
3,337,823 + ECD_03200 0.53 +0.5
3,337,824 - ECD_03200 0.53 +0.5
3,337,824 - ECD_03200 0.53 +0.1
3,337,824 - ECD_03200 0.53 -1.4
3,337,847 - ECD_03200 0.57 +0.2
3,337,850 + ECD_03200 0.58 +0.3
3,337,850 + ECD_03200 0.58 -1.1
3,337,851 - ECD_03200 0.58 -1.0
3,337,858 + ECD_03200 0.59 +0.2
3,337,859 - ECD_03200 0.59 +0.0
3,337,887 + ECD_03200 0.64 -0.4
3,337,888 - ECD_03200 0.64 -0.2
3,337,999 - ECD_03200 0.83 +0.1
3,338,051 - +2.3
3,338,051 - +1.4
3,338,051 - -0.1
3,338,051 - -0.3
3,338,051 - +0.0
3,338,055 - -1.0
3,338,055 - +1.7
3,338,061 + -0.1
3,338,102 - -0.2
3,338,124 - -0.5
3,338,166 + -0.3
3,338,166 + -0.8
3,338,166 + +0.2
3,338,166 + -0.5
3,338,167 - +0.3
3,338,167 - +1.5
3,338,286 - ECD_04371 0.46 -0.0
3,338,301 - ECD_04371 0.54 +1.1
3,338,397 + +0.3

Or see this region's nucleotide sequence