Strain Fitness in Escherichia coli BL21 around ECD_03126

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03125 and ECD_03126 are separated by 538 nucleotidesECD_03126 and ECD_03127 are separated by 67 nucleotides ECD_03125: ECD_03125 - putative outer membrane protein, at 3,279,546 to 3,279,767 _03125 ECD_03126: ECD_03126 - putative amino-acid transporter subunit, at 3,280,306 to 3,281,223 _03126 ECD_03127: ECD_03127 - putative amino acid ABC transporter permease, at 3,281,291 to 3,282,472 _03127 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -2 -1 0 1 2at 3279.497 kb on + strandat 3279.506 kb on + strandat 3279.663 kb on - strand, within ECD_03125at 3279.811 kb on - strandat 3279.817 kb on - strandat 3279.821 kb on - strandat 3279.850 kb on + strandat 3279.866 kb on + strandat 3280.142 kb on + strandat 3280.165 kb on + strandat 3280.168 kb on - strandat 3280.197 kb on + strandat 3280.386 kb on + strandat 3280.438 kb on + strand, within ECD_03126at 3280.506 kb on + strand, within ECD_03126at 3280.555 kb on - strand, within ECD_03126at 3280.567 kb on + strand, within ECD_03126at 3280.610 kb on + strand, within ECD_03126at 3280.704 kb on + strand, within ECD_03126at 3280.711 kb on + strand, within ECD_03126at 3280.711 kb on + strand, within ECD_03126at 3280.711 kb on + strand, within ECD_03126at 3280.805 kb on - strand, within ECD_03126at 3280.823 kb on + strand, within ECD_03126at 3280.860 kb on + strand, within ECD_03126at 3280.861 kb on - strand, within ECD_03126at 3281.034 kb on + strand, within ECD_03126at 3281.073 kb on + strand, within ECD_03126at 3281.073 kb on + strand, within ECD_03126at 3281.073 kb on + strand, within ECD_03126at 3281.073 kb on + strand, within ECD_03126at 3281.073 kb on + strand, within ECD_03126at 3281.074 kb on - strand, within ECD_03126at 3281.074 kb on - strand, within ECD_03126at 3281.083 kb on + strand, within ECD_03126at 3281.083 kb on + strand, within ECD_03126at 3281.083 kb on + strand, within ECD_03126at 3281.084 kb on - strand, within ECD_03126at 3281.085 kb on + strand, within ECD_03126at 3281.203 kb on + strandat 3281.290 kb on + strandat 3281.290 kb on + strandat 3281.291 kb on - strandat 3281.291 kb on - strandat 3281.529 kb on - strand, within ECD_03127at 3281.543 kb on - strand, within ECD_03127at 3281.553 kb on + strand, within ECD_03127at 3281.584 kb on + strand, within ECD_03127at 3281.584 kb on + strand, within ECD_03127at 3281.585 kb on - strand, within ECD_03127at 3281.686 kb on + strand, within ECD_03127at 3281.689 kb on + strand, within ECD_03127at 3281.720 kb on + strand, within ECD_03127at 3281.721 kb on - strand, within ECD_03127at 3281.805 kb on - strand, within ECD_03127at 3281.806 kb on + strand, within ECD_03127at 3281.836 kb on + strand, within ECD_03127at 3281.836 kb on + strand, within ECD_03127at 3281.836 kb on + strand, within ECD_03127at 3281.868 kb on + strand, within ECD_03127at 3281.868 kb on + strand, within ECD_03127at 3281.869 kb on - strand, within ECD_03127at 3281.869 kb on - strand, within ECD_03127at 3281.914 kb on - strand, within ECD_03127at 3281.914 kb on - strand, within ECD_03127at 3281.976 kb on + strand, within ECD_03127at 3282.006 kb on + strand, within ECD_03127at 3282.028 kb on - strand, within ECD_03127at 3282.101 kb on + strand, within ECD_03127at 3282.101 kb on + strand, within ECD_03127at 3282.104 kb on - strand, within ECD_03127at 3282.104 kb on - strand, within ECD_03127at 3282.104 kb on - strand, within ECD_03127at 3282.104 kb on - strand, within ECD_03127at 3282.115 kb on + strand, within ECD_03127

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,279,497 + +0.3
3,279,506 + -0.5
3,279,663 - ECD_03125 0.53 -0.5
3,279,811 - -1.2
3,279,817 - -0.3
3,279,821 - +0.8
3,279,850 + -0.3
3,279,866 + -0.0
3,280,142 + +0.2
3,280,165 + +0.5
3,280,168 - +0.1
3,280,197 + +0.7
3,280,386 + +1.4
3,280,438 + ECD_03126 0.14 -0.8
3,280,506 + ECD_03126 0.22 -1.2
3,280,555 - ECD_03126 0.27 -1.1
3,280,567 + ECD_03126 0.28 -0.0
3,280,610 + ECD_03126 0.33 -0.3
3,280,704 + ECD_03126 0.43 +0.0
3,280,711 + ECD_03126 0.44 -0.1
3,280,711 + ECD_03126 0.44 -0.9
3,280,711 + ECD_03126 0.44 +0.1
3,280,805 - ECD_03126 0.54 +0.2
3,280,823 + ECD_03126 0.56 +0.9
3,280,860 + ECD_03126 0.60 -0.5
3,280,861 - ECD_03126 0.60 +0.3
3,281,034 + ECD_03126 0.79 +0.0
3,281,073 + ECD_03126 0.84 -0.6
3,281,073 + ECD_03126 0.84 +0.1
3,281,073 + ECD_03126 0.84 +0.2
3,281,073 + ECD_03126 0.84 -1.8
3,281,073 + ECD_03126 0.84 -1.5
3,281,074 - ECD_03126 0.84 +1.1
3,281,074 - ECD_03126 0.84 +0.4
3,281,083 + ECD_03126 0.85 +0.1
3,281,083 + ECD_03126 0.85 -0.5
3,281,083 + ECD_03126 0.85 +0.5
3,281,084 - ECD_03126 0.85 +1.0
3,281,085 + ECD_03126 0.85 -0.2
3,281,203 + -0.7
3,281,290 + -0.9
3,281,290 + +1.1
3,281,291 - +0.7
3,281,291 - -0.2
3,281,529 - ECD_03127 0.20 -1.0
3,281,543 - ECD_03127 0.21 +1.0
3,281,553 + ECD_03127 0.22 +1.9
3,281,584 + ECD_03127 0.25 -1.6
3,281,584 + ECD_03127 0.25 -0.5
3,281,585 - ECD_03127 0.25 -0.7
3,281,686 + ECD_03127 0.33 -0.4
3,281,689 + ECD_03127 0.34 -0.3
3,281,720 + ECD_03127 0.36 -0.4
3,281,721 - ECD_03127 0.36 +0.3
3,281,805 - ECD_03127 0.43 -0.5
3,281,806 + ECD_03127 0.44 -0.5
3,281,836 + ECD_03127 0.46 -0.1
3,281,836 + ECD_03127 0.46 +0.3
3,281,836 + ECD_03127 0.46 +0.5
3,281,868 + ECD_03127 0.49 +0.3
3,281,868 + ECD_03127 0.49 +0.2
3,281,869 - ECD_03127 0.49 -0.7
3,281,869 - ECD_03127 0.49 -0.3
3,281,914 - ECD_03127 0.53 -0.6
3,281,914 - ECD_03127 0.53 -0.4
3,281,976 + ECD_03127 0.58 -1.5
3,282,006 + ECD_03127 0.60 +0.2
3,282,028 - ECD_03127 0.62 -1.3
3,282,101 + ECD_03127 0.69 +1.3
3,282,101 + ECD_03127 0.69 +0.0
3,282,104 - ECD_03127 0.69 +1.0
3,282,104 - ECD_03127 0.69 +1.0
3,282,104 - ECD_03127 0.69 +0.6
3,282,104 - ECD_03127 0.69 +0.3
3,282,115 + ECD_03127 0.70 +0.6

Or see this region's nucleotide sequence