Strain Fitness in Escherichia coli BL21 around ECD_03123

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03122 and ECD_03123 are separated by 398 nucleotidesECD_03123 and ECD_03124 are separated by 11 nucleotides ECD_03122: ECD_03122 - acrAB operon transcriptional repressor, at 3,273,959 to 3,274,621 _03122 ECD_03123: ECD_03123 - cytoplasmic membrane lipoprotein, at 3,275,020 to 3,276,177 _03123 ECD_03124: ECD_03124 - multidrug efflux system protein, at 3,276,189 to 3,279,293 _03124 Position (kb) 3275 3276 3277Strain fitness (log2 ratio) -2 -1 0 1 2at 3274.327 kb on - strand, within ECD_03122at 3274.477 kb on - strand, within ECD_03122at 3274.536 kb on - strand, within ECD_03122at 3274.872 kb on + strandat 3275.208 kb on + strand, within ECD_03123at 3275.243 kb on + strand, within ECD_03123at 3275.253 kb on + strand, within ECD_03123at 3275.254 kb on - strand, within ECD_03123at 3275.276 kb on + strand, within ECD_03123at 3275.276 kb on + strand, within ECD_03123at 3275.276 kb on + strand, within ECD_03123at 3275.277 kb on - strand, within ECD_03123at 3275.277 kb on - strand, within ECD_03123at 3275.329 kb on + strand, within ECD_03123at 3275.330 kb on - strand, within ECD_03123at 3275.330 kb on - strand, within ECD_03123at 3275.425 kb on + strand, within ECD_03123at 3275.426 kb on - strand, within ECD_03123at 3275.426 kb on - strand, within ECD_03123at 3275.426 kb on - strand, within ECD_03123at 3275.533 kb on + strand, within ECD_03123at 3275.536 kb on - strand, within ECD_03123at 3275.605 kb on - strand, within ECD_03123at 3275.649 kb on + strand, within ECD_03123at 3275.650 kb on - strand, within ECD_03123at 3275.650 kb on - strand, within ECD_03123at 3275.650 kb on - strand, within ECD_03123at 3275.650 kb on - strand, within ECD_03123at 3275.653 kb on + strand, within ECD_03123at 3275.653 kb on + strand, within ECD_03123at 3275.653 kb on + strand, within ECD_03123at 3275.653 kb on + strand, within ECD_03123at 3275.653 kb on + strand, within ECD_03123at 3275.654 kb on - strand, within ECD_03123at 3275.654 kb on - strand, within ECD_03123at 3275.654 kb on - strand, within ECD_03123at 3275.654 kb on - strand, within ECD_03123at 3275.654 kb on - strand, within ECD_03123at 3275.654 kb on - strand, within ECD_03123at 3275.747 kb on + strand, within ECD_03123at 3275.748 kb on - strand, within ECD_03123at 3275.790 kb on + strand, within ECD_03123at 3275.791 kb on - strand, within ECD_03123at 3275.843 kb on + strand, within ECD_03123at 3275.843 kb on + strand, within ECD_03123at 3275.843 kb on + strand, within ECD_03123at 3275.843 kb on + strand, within ECD_03123at 3275.844 kb on - strand, within ECD_03123at 3275.844 kb on - strand, within ECD_03123at 3275.871 kb on + strand, within ECD_03123at 3275.871 kb on + strand, within ECD_03123at 3275.872 kb on - strand, within ECD_03123at 3276.162 kb on + strandat 3276.176 kb on - strandat 3276.180 kb on + strandat 3276.181 kb on - strandat 3276.181 kb on - strandat 3276.240 kb on - strandat 3276.272 kb on - strandat 3276.334 kb on - strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.417 kb on + strandat 3276.419 kb on + strandat 3276.419 kb on + strandat 3276.419 kb on + strandat 3276.419 kb on + strandat 3276.419 kb on + strandat 3276.420 kb on - strandat 3276.420 kb on - strandat 3276.420 kb on - strandat 3276.420 kb on - strandat 3276.420 kb on - strandat 3276.420 kb on - strandat 3276.420 kb on - strandat 3276.420 kb on - strandat 3276.458 kb on + strandat 3276.458 kb on + strandat 3276.458 kb on + strandat 3276.595 kb on - strand, within ECD_03124at 3276.595 kb on - strand, within ECD_03124at 3276.658 kb on - strand, within ECD_03124at 3276.658 kb on - strand, within ECD_03124at 3276.681 kb on - strand, within ECD_03124at 3276.681 kb on - strand, within ECD_03124at 3276.712 kb on + strand, within ECD_03124at 3276.713 kb on - strand, within ECD_03124at 3276.732 kb on + strand, within ECD_03124at 3276.733 kb on - strand, within ECD_03124at 3276.815 kb on - strand, within ECD_03124at 3277.013 kb on + strand, within ECD_03124at 3277.168 kb on - strand, within ECD_03124at 3277.168 kb on - strand, within ECD_03124

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
3,274,327 - ECD_03122 0.56 -0.1
3,274,477 - ECD_03122 0.78 +0.7
3,274,536 - ECD_03122 0.87 -0.1
3,274,872 + -0.5
3,275,208 + ECD_03123 0.16 +0.1
3,275,243 + ECD_03123 0.19 -1.4
3,275,253 + ECD_03123 0.20 -0.8
3,275,254 - ECD_03123 0.20 +1.2
3,275,276 + ECD_03123 0.22 -0.0
3,275,276 + ECD_03123 0.22 -0.2
3,275,276 + ECD_03123 0.22 -0.0
3,275,277 - ECD_03123 0.22 -0.9
3,275,277 - ECD_03123 0.22 +0.8
3,275,329 + ECD_03123 0.27 +0.6
3,275,330 - ECD_03123 0.27 +1.1
3,275,330 - ECD_03123 0.27 +0.2
3,275,425 + ECD_03123 0.35 -0.6
3,275,426 - ECD_03123 0.35 -0.5
3,275,426 - ECD_03123 0.35 -0.1
3,275,426 - ECD_03123 0.35 +0.0
3,275,533 + ECD_03123 0.44 +0.3
3,275,536 - ECD_03123 0.45 -0.4
3,275,605 - ECD_03123 0.51 +0.4
3,275,649 + ECD_03123 0.54 -1.6
3,275,650 - ECD_03123 0.54 +0.7
3,275,650 - ECD_03123 0.54 +1.5
3,275,650 - ECD_03123 0.54 -0.8
3,275,650 - ECD_03123 0.54 +1.5
3,275,653 + ECD_03123 0.55 -0.0
3,275,653 + ECD_03123 0.55 +0.0
3,275,653 + ECD_03123 0.55 -0.2
3,275,653 + ECD_03123 0.55 -0.1
3,275,653 + ECD_03123 0.55 -0.1
3,275,654 - ECD_03123 0.55 +0.6
3,275,654 - ECD_03123 0.55 -0.0
3,275,654 - ECD_03123 0.55 -2.7
3,275,654 - ECD_03123 0.55 +0.7
3,275,654 - ECD_03123 0.55 +0.3
3,275,654 - ECD_03123 0.55 +0.8
3,275,747 + ECD_03123 0.63 -0.4
3,275,748 - ECD_03123 0.63 +0.0
3,275,790 + ECD_03123 0.66 +0.3
3,275,791 - ECD_03123 0.67 +0.2
3,275,843 + ECD_03123 0.71 -1.2
3,275,843 + ECD_03123 0.71 +0.0
3,275,843 + ECD_03123 0.71 -1.2
3,275,843 + ECD_03123 0.71 -1.0
3,275,844 - ECD_03123 0.71 -0.9
3,275,844 - ECD_03123 0.71 -0.3
3,275,871 + ECD_03123 0.73 -0.8
3,275,871 + ECD_03123 0.73 +0.0
3,275,872 - ECD_03123 0.74 -0.5
3,276,162 + +1.8
3,276,176 - -0.3
3,276,180 + -0.3
3,276,181 - +0.8
3,276,181 - -0.4
3,276,240 - +0.9
3,276,272 - +0.4
3,276,334 - -0.5
3,276,417 + +0.1
3,276,417 + -0.1
3,276,417 + -0.3
3,276,417 + +0.5
3,276,417 + +0.1
3,276,417 + +0.1
3,276,417 + -0.2
3,276,417 + +0.1
3,276,417 + -0.1
3,276,419 + +0.2
3,276,419 + -0.4
3,276,419 + +0.7
3,276,419 + -0.5
3,276,419 + -1.6
3,276,420 - +0.2
3,276,420 - -0.2
3,276,420 - +0.5
3,276,420 - -0.8
3,276,420 - +0.2
3,276,420 - -0.4
3,276,420 - +1.0
3,276,420 - +1.0
3,276,458 + -0.0
3,276,458 + +0.2
3,276,458 + -0.4
3,276,595 - ECD_03124 0.13 +1.4
3,276,595 - ECD_03124 0.13 +0.1
3,276,658 - ECD_03124 0.15 +1.0
3,276,658 - ECD_03124 0.15 -0.6
3,276,681 - ECD_03124 0.16 -0.3
3,276,681 - ECD_03124 0.16 -0.1
3,276,712 + ECD_03124 0.17 +0.5
3,276,713 - ECD_03124 0.17 +0.4
3,276,732 + ECD_03124 0.17 +1.1
3,276,733 - ECD_03124 0.18 +0.2
3,276,815 - ECD_03124 0.20 -0.2
3,277,013 + ECD_03124 0.27 +0.7
3,277,168 - ECD_03124 0.32 -0.5
3,277,168 - ECD_03124 0.32 -0.9

Or see this region's nucleotide sequence