Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03122 and ECD_03123 are separated by 398 nucleotides ECD_03123 and ECD_03124 are separated by 11 nucleotides
ECD_03122: ECD_03122 - acrAB operon transcriptional repressor, at 3,273,959 to 3,274,621
_03122
ECD_03123: ECD_03123 - cytoplasmic membrane lipoprotein, at 3,275,020 to 3,276,177
_03123
ECD_03124: ECD_03124 - multidrug efflux system protein, at 3,276,189 to 3,279,293
_03124
Position (kb)
3275
3276
3277 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3274.327 kb on - strand, within ECD_03122 at 3274.477 kb on - strand, within ECD_03122 at 3274.536 kb on - strand, within ECD_03122 at 3274.872 kb on + strand at 3275.208 kb on + strand, within ECD_03123 at 3275.243 kb on + strand, within ECD_03123 at 3275.253 kb on + strand, within ECD_03123 at 3275.254 kb on - strand, within ECD_03123 at 3275.276 kb on + strand, within ECD_03123 at 3275.276 kb on + strand, within ECD_03123 at 3275.276 kb on + strand, within ECD_03123 at 3275.277 kb on - strand, within ECD_03123 at 3275.277 kb on - strand, within ECD_03123 at 3275.329 kb on + strand, within ECD_03123 at 3275.330 kb on - strand, within ECD_03123 at 3275.330 kb on - strand, within ECD_03123 at 3275.425 kb on + strand, within ECD_03123 at 3275.426 kb on - strand, within ECD_03123 at 3275.426 kb on - strand, within ECD_03123 at 3275.426 kb on - strand, within ECD_03123 at 3275.533 kb on + strand, within ECD_03123 at 3275.536 kb on - strand, within ECD_03123 at 3275.605 kb on - strand, within ECD_03123 at 3275.649 kb on + strand, within ECD_03123 at 3275.650 kb on - strand, within ECD_03123 at 3275.650 kb on - strand, within ECD_03123 at 3275.650 kb on - strand, within ECD_03123 at 3275.650 kb on - strand, within ECD_03123 at 3275.653 kb on + strand, within ECD_03123 at 3275.653 kb on + strand, within ECD_03123 at 3275.653 kb on + strand, within ECD_03123 at 3275.653 kb on + strand, within ECD_03123 at 3275.653 kb on + strand, within ECD_03123 at 3275.654 kb on - strand, within ECD_03123 at 3275.654 kb on - strand, within ECD_03123 at 3275.654 kb on - strand, within ECD_03123 at 3275.654 kb on - strand, within ECD_03123 at 3275.654 kb on - strand, within ECD_03123 at 3275.654 kb on - strand, within ECD_03123 at 3275.747 kb on + strand, within ECD_03123 at 3275.748 kb on - strand, within ECD_03123 at 3275.790 kb on + strand, within ECD_03123 at 3275.791 kb on - strand, within ECD_03123 at 3275.843 kb on + strand, within ECD_03123 at 3275.843 kb on + strand, within ECD_03123 at 3275.843 kb on + strand, within ECD_03123 at 3275.843 kb on + strand, within ECD_03123 at 3275.844 kb on - strand, within ECD_03123 at 3275.844 kb on - strand, within ECD_03123 at 3275.871 kb on + strand, within ECD_03123 at 3275.871 kb on + strand, within ECD_03123 at 3275.872 kb on - strand, within ECD_03123 at 3276.162 kb on + strand at 3276.176 kb on - strand at 3276.180 kb on + strand at 3276.181 kb on - strand at 3276.181 kb on - strand at 3276.240 kb on - strand at 3276.272 kb on - strand at 3276.334 kb on - strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.417 kb on + strand at 3276.419 kb on + strand at 3276.419 kb on + strand at 3276.419 kb on + strand at 3276.419 kb on + strand at 3276.419 kb on + strand at 3276.420 kb on - strand at 3276.420 kb on - strand at 3276.420 kb on - strand at 3276.420 kb on - strand at 3276.420 kb on - strand at 3276.420 kb on - strand at 3276.420 kb on - strand at 3276.420 kb on - strand at 3276.458 kb on + strand at 3276.458 kb on + strand at 3276.458 kb on + strand at 3276.595 kb on - strand, within ECD_03124 at 3276.595 kb on - strand, within ECD_03124 at 3276.658 kb on - strand, within ECD_03124 at 3276.658 kb on - strand, within ECD_03124 at 3276.681 kb on - strand, within ECD_03124 at 3276.681 kb on - strand, within ECD_03124 at 3276.712 kb on + strand, within ECD_03124 at 3276.713 kb on - strand, within ECD_03124 at 3276.732 kb on + strand, within ECD_03124 at 3276.733 kb on - strand, within ECD_03124 at 3276.815 kb on - strand, within ECD_03124 at 3277.013 kb on + strand, within ECD_03124 at 3277.168 kb on - strand, within ECD_03124 at 3277.168 kb on - strand, within ECD_03124
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,274,327 - ECD_03122 0.56 -0.1 3,274,477 - ECD_03122 0.78 +0.7 3,274,536 - ECD_03122 0.87 -0.1 3,274,872 + -0.5 3,275,208 + ECD_03123 0.16 +0.1 3,275,243 + ECD_03123 0.19 -1.4 3,275,253 + ECD_03123 0.20 -0.8 3,275,254 - ECD_03123 0.20 +1.2 3,275,276 + ECD_03123 0.22 -0.0 3,275,276 + ECD_03123 0.22 -0.2 3,275,276 + ECD_03123 0.22 -0.0 3,275,277 - ECD_03123 0.22 -0.9 3,275,277 - ECD_03123 0.22 +0.8 3,275,329 + ECD_03123 0.27 +0.6 3,275,330 - ECD_03123 0.27 +1.1 3,275,330 - ECD_03123 0.27 +0.2 3,275,425 + ECD_03123 0.35 -0.6 3,275,426 - ECD_03123 0.35 -0.5 3,275,426 - ECD_03123 0.35 -0.1 3,275,426 - ECD_03123 0.35 +0.0 3,275,533 + ECD_03123 0.44 +0.3 3,275,536 - ECD_03123 0.45 -0.4 3,275,605 - ECD_03123 0.51 +0.4 3,275,649 + ECD_03123 0.54 -1.6 3,275,650 - ECD_03123 0.54 +0.7 3,275,650 - ECD_03123 0.54 +1.5 3,275,650 - ECD_03123 0.54 -0.8 3,275,650 - ECD_03123 0.54 +1.5 3,275,653 + ECD_03123 0.55 -0.0 3,275,653 + ECD_03123 0.55 +0.0 3,275,653 + ECD_03123 0.55 -0.2 3,275,653 + ECD_03123 0.55 -0.1 3,275,653 + ECD_03123 0.55 -0.1 3,275,654 - ECD_03123 0.55 +0.6 3,275,654 - ECD_03123 0.55 -0.0 3,275,654 - ECD_03123 0.55 -2.7 3,275,654 - ECD_03123 0.55 +0.7 3,275,654 - ECD_03123 0.55 +0.3 3,275,654 - ECD_03123 0.55 +0.8 3,275,747 + ECD_03123 0.63 -0.4 3,275,748 - ECD_03123 0.63 +0.0 3,275,790 + ECD_03123 0.66 +0.3 3,275,791 - ECD_03123 0.67 +0.2 3,275,843 + ECD_03123 0.71 -1.2 3,275,843 + ECD_03123 0.71 +0.0 3,275,843 + ECD_03123 0.71 -1.2 3,275,843 + ECD_03123 0.71 -1.0 3,275,844 - ECD_03123 0.71 -0.9 3,275,844 - ECD_03123 0.71 -0.3 3,275,871 + ECD_03123 0.73 -0.8 3,275,871 + ECD_03123 0.73 +0.0 3,275,872 - ECD_03123 0.74 -0.5 3,276,162 + +1.8 3,276,176 - -0.3 3,276,180 + -0.3 3,276,181 - +0.8 3,276,181 - -0.4 3,276,240 - +0.9 3,276,272 - +0.4 3,276,334 - -0.5 3,276,417 + +0.1 3,276,417 + -0.1 3,276,417 + -0.3 3,276,417 + +0.5 3,276,417 + +0.1 3,276,417 + +0.1 3,276,417 + -0.2 3,276,417 + +0.1 3,276,417 + -0.1 3,276,419 + +0.2 3,276,419 + -0.4 3,276,419 + +0.7 3,276,419 + -0.5 3,276,419 + -1.6 3,276,420 - +0.2 3,276,420 - -0.2 3,276,420 - +0.5 3,276,420 - -0.8 3,276,420 - +0.2 3,276,420 - -0.4 3,276,420 - +1.0 3,276,420 - +1.0 3,276,458 + -0.0 3,276,458 + +0.2 3,276,458 + -0.4 3,276,595 - ECD_03124 0.13 +1.4 3,276,595 - ECD_03124 0.13 +0.1 3,276,658 - ECD_03124 0.15 +1.0 3,276,658 - ECD_03124 0.15 -0.6 3,276,681 - ECD_03124 0.16 -0.3 3,276,681 - ECD_03124 0.16 -0.1 3,276,712 + ECD_03124 0.17 +0.5 3,276,713 - ECD_03124 0.17 +0.4 3,276,732 + ECD_03124 0.17 +1.1 3,276,733 - ECD_03124 0.18 +0.2 3,276,815 - ECD_03124 0.20 -0.2 3,277,013 + ECD_03124 0.27 +0.7 3,277,168 - ECD_03124 0.32 -0.5 3,277,168 - ECD_03124 0.32 -0.9
Or see this region's nucleotide sequence