Strain Fitness in Escherichia coli BL21 around ECD_02982

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02981 and ECD_02982 are separated by 33 nucleotidesECD_02982 and ECD_02983 are separated by 25 nucleotides ECD_02981: ECD_02981 - pyruvate formate-lyase 4/2-ketobutyrate formate-lyase, at 3,126,423 to 3,128,717 _02981 ECD_02982: ECD_02982 - propionate kinase/acetate kinase C, anaerobic, at 3,128,751 to 3,129,959 _02982 ECD_02983: ECD_02983 - L-threonine/L-serine transporter, at 3,129,985 to 3,131,316 _02983 Position (kb) 3128 3129 3130Strain fitness (log2 ratio) -1 0 1 2at 3127.758 kb on + strand, within ECD_02981at 3127.759 kb on - strand, within ECD_02981at 3127.846 kb on + strand, within ECD_02981at 3127.847 kb on - strand, within ECD_02981at 3127.847 kb on - strand, within ECD_02981at 3127.918 kb on + strand, within ECD_02981at 3127.973 kb on + strand, within ECD_02981at 3128.143 kb on + strand, within ECD_02981at 3128.248 kb on + strand, within ECD_02981at 3128.259 kb on + strand, within ECD_02981at 3128.260 kb on - strand, within ECD_02981at 3128.279 kb on + strand, within ECD_02981at 3128.300 kb on - strand, within ECD_02981at 3128.357 kb on + strand, within ECD_02981at 3128.377 kb on - strand, within ECD_02981at 3128.438 kb on + strand, within ECD_02981at 3128.438 kb on + strand, within ECD_02981at 3128.439 kb on - strand, within ECD_02981at 3128.439 kb on - strand, within ECD_02981at 3128.439 kb on - strand, within ECD_02981at 3128.441 kb on - strand, within ECD_02981at 3128.441 kb on - strand, within ECD_02981at 3128.604 kb on - strandat 3128.605 kb on + strandat 3128.606 kb on - strandat 3128.606 kb on - strandat 3128.606 kb on - strandat 3128.606 kb on - strandat 3128.610 kb on - strandat 3128.710 kb on - strandat 3128.710 kb on - strandat 3128.897 kb on + strand, within ECD_02982at 3128.996 kb on + strand, within ECD_02982at 3129.016 kb on - strand, within ECD_02982at 3129.123 kb on + strand, within ECD_02982at 3129.147 kb on - strand, within ECD_02982at 3129.167 kb on + strand, within ECD_02982at 3129.174 kb on + strand, within ECD_02982at 3129.300 kb on - strand, within ECD_02982at 3129.454 kb on - strand, within ECD_02982at 3129.492 kb on + strand, within ECD_02982at 3129.537 kb on + strand, within ECD_02982at 3129.592 kb on - strand, within ECD_02982at 3129.660 kb on - strand, within ECD_02982at 3129.825 kb on + strand, within ECD_02982at 3129.870 kb on + strandat 3129.871 kb on - strandat 3129.930 kb on - strandat 3129.930 kb on - strandat 3130.065 kb on - strandat 3130.065 kb on - strandat 3130.097 kb on + strandat 3130.098 kb on - strandat 3130.098 kb on - strandat 3130.221 kb on + strand, within ECD_02983at 3130.222 kb on - strand, within ECD_02983at 3130.314 kb on - strand, within ECD_02983at 3130.447 kb on - strand, within ECD_02983at 3130.447 kb on - strand, within ECD_02983at 3130.488 kb on + strand, within ECD_02983at 3130.501 kb on - strand, within ECD_02983at 3130.567 kb on - strand, within ECD_02983at 3130.567 kb on - strand, within ECD_02983at 3130.602 kb on - strand, within ECD_02983at 3130.614 kb on + strand, within ECD_02983at 3130.615 kb on - strand, within ECD_02983at 3130.813 kb on + strand, within ECD_02983at 3130.814 kb on - strand, within ECD_02983at 3130.821 kb on - strand, within ECD_02983at 3130.948 kb on - strand, within ECD_02983

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,127,758 + ECD_02981 0.58 +0.4
3,127,759 - ECD_02981 0.58 +0.3
3,127,846 + ECD_02981 0.62 -0.7
3,127,847 - ECD_02981 0.62 -0.3
3,127,847 - ECD_02981 0.62 +0.5
3,127,918 + ECD_02981 0.65 +1.5
3,127,973 + ECD_02981 0.68 +1.1
3,128,143 + ECD_02981 0.75 +0.3
3,128,248 + ECD_02981 0.80 -1.0
3,128,259 + ECD_02981 0.80 +0.2
3,128,260 - ECD_02981 0.80 -0.1
3,128,279 + ECD_02981 0.81 +1.2
3,128,300 - ECD_02981 0.82 +0.1
3,128,357 + ECD_02981 0.84 +0.1
3,128,377 - ECD_02981 0.85 +0.2
3,128,438 + ECD_02981 0.88 +0.2
3,128,438 + ECD_02981 0.88 +0.4
3,128,439 - ECD_02981 0.88 -0.7
3,128,439 - ECD_02981 0.88 -0.5
3,128,439 - ECD_02981 0.88 +0.2
3,128,441 - ECD_02981 0.88 +1.1
3,128,441 - ECD_02981 0.88 +1.1
3,128,604 - -1.1
3,128,605 + +0.2
3,128,606 - -0.0
3,128,606 - -0.5
3,128,606 - +0.5
3,128,606 - -1.5
3,128,610 - -1.4
3,128,710 - -0.2
3,128,710 - +0.4
3,128,897 + ECD_02982 0.12 +0.8
3,128,996 + ECD_02982 0.20 +0.8
3,129,016 - ECD_02982 0.22 +0.6
3,129,123 + ECD_02982 0.31 +0.4
3,129,147 - ECD_02982 0.33 +0.0
3,129,167 + ECD_02982 0.34 +0.3
3,129,174 + ECD_02982 0.35 +0.3
3,129,300 - ECD_02982 0.45 -0.5
3,129,454 - ECD_02982 0.58 -0.3
3,129,492 + ECD_02982 0.61 +1.3
3,129,537 + ECD_02982 0.65 +0.8
3,129,592 - ECD_02982 0.70 +0.5
3,129,660 - ECD_02982 0.75 +2.5
3,129,825 + ECD_02982 0.89 -0.2
3,129,870 + +0.4
3,129,871 - -0.7
3,129,930 - +0.9
3,129,930 - +1.2
3,130,065 - +0.3
3,130,065 - +0.3
3,130,097 + -1.5
3,130,098 - +0.8
3,130,098 - -0.2
3,130,221 + ECD_02983 0.18 -0.8
3,130,222 - ECD_02983 0.18 -0.2
3,130,314 - ECD_02983 0.25 -0.3
3,130,447 - ECD_02983 0.35 -0.8
3,130,447 - ECD_02983 0.35 +1.5
3,130,488 + ECD_02983 0.38 +0.4
3,130,501 - ECD_02983 0.39 +0.2
3,130,567 - ECD_02983 0.44 -0.3
3,130,567 - ECD_02983 0.44 +2.3
3,130,602 - ECD_02983 0.46 -0.8
3,130,614 + ECD_02983 0.47 +1.0
3,130,615 - ECD_02983 0.47 +0.7
3,130,813 + ECD_02983 0.62 -0.0
3,130,814 - ECD_02983 0.62 +0.1
3,130,821 - ECD_02983 0.63 -1.0
3,130,948 - ECD_02983 0.72 +1.3

Or see this region's nucleotide sequence