Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02981 and ECD_02982 are separated by 33 nucleotides ECD_02982 and ECD_02983 are separated by 25 nucleotides
ECD_02981: ECD_02981 - pyruvate formate-lyase 4/2-ketobutyrate formate-lyase, at 3,126,423 to 3,128,717
_02981
ECD_02982: ECD_02982 - propionate kinase/acetate kinase C, anaerobic, at 3,128,751 to 3,129,959
_02982
ECD_02983: ECD_02983 - L-threonine/L-serine transporter, at 3,129,985 to 3,131,316
_02983
Position (kb)
3128
3129
3130 Strain fitness (log2 ratio)
-1
0
1
2 at 3127.758 kb on + strand, within ECD_02981 at 3127.759 kb on - strand, within ECD_02981 at 3127.846 kb on + strand, within ECD_02981 at 3127.847 kb on - strand, within ECD_02981 at 3127.847 kb on - strand, within ECD_02981 at 3127.918 kb on + strand, within ECD_02981 at 3127.973 kb on + strand, within ECD_02981 at 3128.143 kb on + strand, within ECD_02981 at 3128.248 kb on + strand, within ECD_02981 at 3128.259 kb on + strand, within ECD_02981 at 3128.260 kb on - strand, within ECD_02981 at 3128.279 kb on + strand, within ECD_02981 at 3128.300 kb on - strand, within ECD_02981 at 3128.357 kb on + strand, within ECD_02981 at 3128.377 kb on - strand, within ECD_02981 at 3128.438 kb on + strand, within ECD_02981 at 3128.438 kb on + strand, within ECD_02981 at 3128.439 kb on - strand, within ECD_02981 at 3128.439 kb on - strand, within ECD_02981 at 3128.439 kb on - strand, within ECD_02981 at 3128.441 kb on - strand, within ECD_02981 at 3128.441 kb on - strand, within ECD_02981 at 3128.604 kb on - strand at 3128.605 kb on + strand at 3128.606 kb on - strand at 3128.606 kb on - strand at 3128.606 kb on - strand at 3128.606 kb on - strand at 3128.610 kb on - strand at 3128.710 kb on - strand at 3128.710 kb on - strand at 3128.897 kb on + strand, within ECD_02982 at 3128.996 kb on + strand, within ECD_02982 at 3129.016 kb on - strand, within ECD_02982 at 3129.123 kb on + strand, within ECD_02982 at 3129.147 kb on - strand, within ECD_02982 at 3129.167 kb on + strand, within ECD_02982 at 3129.174 kb on + strand, within ECD_02982 at 3129.300 kb on - strand, within ECD_02982 at 3129.454 kb on - strand, within ECD_02982 at 3129.492 kb on + strand, within ECD_02982 at 3129.537 kb on + strand, within ECD_02982 at 3129.592 kb on - strand, within ECD_02982 at 3129.660 kb on - strand, within ECD_02982 at 3129.825 kb on + strand, within ECD_02982 at 3129.870 kb on + strand at 3129.871 kb on - strand at 3129.930 kb on - strand at 3129.930 kb on - strand at 3130.065 kb on - strand at 3130.065 kb on - strand at 3130.097 kb on + strand at 3130.098 kb on - strand at 3130.098 kb on - strand at 3130.221 kb on + strand, within ECD_02983 at 3130.222 kb on - strand, within ECD_02983 at 3130.314 kb on - strand, within ECD_02983 at 3130.447 kb on - strand, within ECD_02983 at 3130.447 kb on - strand, within ECD_02983 at 3130.488 kb on + strand, within ECD_02983 at 3130.501 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.602 kb on - strand, within ECD_02983 at 3130.614 kb on + strand, within ECD_02983 at 3130.615 kb on - strand, within ECD_02983 at 3130.813 kb on + strand, within ECD_02983 at 3130.814 kb on - strand, within ECD_02983 at 3130.821 kb on - strand, within ECD_02983 at 3130.948 kb on - strand, within ECD_02983
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,127,758 + ECD_02981 0.58 +0.4 3,127,759 - ECD_02981 0.58 +0.3 3,127,846 + ECD_02981 0.62 -0.7 3,127,847 - ECD_02981 0.62 -0.3 3,127,847 - ECD_02981 0.62 +0.5 3,127,918 + ECD_02981 0.65 +1.5 3,127,973 + ECD_02981 0.68 +1.1 3,128,143 + ECD_02981 0.75 +0.3 3,128,248 + ECD_02981 0.80 -1.0 3,128,259 + ECD_02981 0.80 +0.2 3,128,260 - ECD_02981 0.80 -0.1 3,128,279 + ECD_02981 0.81 +1.2 3,128,300 - ECD_02981 0.82 +0.1 3,128,357 + ECD_02981 0.84 +0.1 3,128,377 - ECD_02981 0.85 +0.2 3,128,438 + ECD_02981 0.88 +0.2 3,128,438 + ECD_02981 0.88 +0.4 3,128,439 - ECD_02981 0.88 -0.7 3,128,439 - ECD_02981 0.88 -0.5 3,128,439 - ECD_02981 0.88 +0.2 3,128,441 - ECD_02981 0.88 +1.1 3,128,441 - ECD_02981 0.88 +1.1 3,128,604 - -1.1 3,128,605 + +0.2 3,128,606 - -0.0 3,128,606 - -0.5 3,128,606 - +0.5 3,128,606 - -1.5 3,128,610 - -1.4 3,128,710 - -0.2 3,128,710 - +0.4 3,128,897 + ECD_02982 0.12 +0.8 3,128,996 + ECD_02982 0.20 +0.8 3,129,016 - ECD_02982 0.22 +0.6 3,129,123 + ECD_02982 0.31 +0.4 3,129,147 - ECD_02982 0.33 +0.0 3,129,167 + ECD_02982 0.34 +0.3 3,129,174 + ECD_02982 0.35 +0.3 3,129,300 - ECD_02982 0.45 -0.5 3,129,454 - ECD_02982 0.58 -0.3 3,129,492 + ECD_02982 0.61 +1.3 3,129,537 + ECD_02982 0.65 +0.8 3,129,592 - ECD_02982 0.70 +0.5 3,129,660 - ECD_02982 0.75 +2.5 3,129,825 + ECD_02982 0.89 -0.2 3,129,870 + +0.4 3,129,871 - -0.7 3,129,930 - +0.9 3,129,930 - +1.2 3,130,065 - +0.3 3,130,065 - +0.3 3,130,097 + -1.5 3,130,098 - +0.8 3,130,098 - -0.2 3,130,221 + ECD_02983 0.18 -0.8 3,130,222 - ECD_02983 0.18 -0.2 3,130,314 - ECD_02983 0.25 -0.3 3,130,447 - ECD_02983 0.35 -0.8 3,130,447 - ECD_02983 0.35 +1.5 3,130,488 + ECD_02983 0.38 +0.4 3,130,501 - ECD_02983 0.39 +0.2 3,130,567 - ECD_02983 0.44 -0.3 3,130,567 - ECD_02983 0.44 +2.3 3,130,602 - ECD_02983 0.46 -0.8 3,130,614 + ECD_02983 0.47 +1.0 3,130,615 - ECD_02983 0.47 +0.7 3,130,813 + ECD_02983 0.62 -0.0 3,130,814 - ECD_02983 0.62 +0.1 3,130,821 - ECD_02983 0.63 -1.0 3,130,948 - ECD_02983 0.72 +1.3
Or see this region's nucleotide sequence