Strain Fitness in Escherichia coli BL21 around ECD_02971

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02968 and ECD_02969 overlap by 11 nucleotidesECD_02969 and ECD_02970 are separated by 185 nucleotidesECD_02970 and ECD_02971 are separated by 69 nucleotidesECD_02971 and ECD_02972 are separated by 292 nucleotidesECD_02972 and ECD_02973 are separated by 241 nucleotides ECD_02968: ECD_02968 - DUF1469 family inner membrane protein, at 3,115,982 to 3,116,386 _02968 ECD_02969: ECD_02969 - uncharacterized protein, at 3,116,376 to 3,116,675 _02969 ECD_02970: ECD_02970 - putative quinol oxidase subunit, at 3,116,861 to 3,117,253 _02970 ECD_02971: ECD_02971 - putative S-transferase, at 3,117,323 to 3,118,309 _02971 ECD_02972: ECD_02972 - DUF805 family inner membrane protein, at 3,118,602 to 3,118,967 _02972 ECD_02973: ECD_02973 - DUF805 family inner membrane protein, at 3,119,209 to 3,119,565 _02973 Position (kb) 3117 3118 3119Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3116.326 kb on + strand, within ECD_02968at 3116.384 kb on + strandat 3116.406 kb on - strand, within ECD_02969at 3116.508 kb on - strand, within ECD_02969at 3116.515 kb on + strand, within ECD_02969at 3116.515 kb on + strand, within ECD_02969at 3116.515 kb on + strand, within ECD_02969at 3116.516 kb on - strand, within ECD_02969at 3116.516 kb on - strand, within ECD_02969at 3116.579 kb on + strand, within ECD_02969at 3116.579 kb on + strand, within ECD_02969at 3116.579 kb on + strand, within ECD_02969at 3116.580 kb on - strand, within ECD_02969at 3116.580 kb on - strand, within ECD_02969at 3116.580 kb on - strand, within ECD_02969at 3116.580 kb on - strand, within ECD_02969at 3116.580 kb on - strand, within ECD_02969at 3116.580 kb on - strand, within ECD_02969at 3116.580 kb on - strand, within ECD_02969at 3116.582 kb on + strand, within ECD_02969at 3116.582 kb on + strand, within ECD_02969at 3116.583 kb on - strand, within ECD_02969at 3116.583 kb on - strand, within ECD_02969at 3116.618 kb on - strand, within ECD_02969at 3116.674 kb on - strandat 3116.800 kb on + strandat 3116.801 kb on - strandat 3116.801 kb on - strandat 3116.802 kb on - strandat 3116.860 kb on - strandat 3116.969 kb on + strand, within ECD_02970at 3116.970 kb on - strand, within ECD_02970at 3116.971 kb on + strand, within ECD_02970at 3116.971 kb on + strand, within ECD_02970at 3116.971 kb on + strand, within ECD_02970at 3116.971 kb on + strand, within ECD_02970at 3116.999 kb on - strand, within ECD_02970at 3116.999 kb on - strand, within ECD_02970at 3117.082 kb on + strand, within ECD_02970at 3117.220 kb on + strandat 3117.220 kb on + strandat 3117.251 kb on + strandat 3117.264 kb on + strandat 3117.264 kb on + strandat 3117.265 kb on - strandat 3117.494 kb on + strand, within ECD_02971at 3117.653 kb on + strand, within ECD_02971at 3117.654 kb on - strand, within ECD_02971at 3117.680 kb on + strand, within ECD_02971at 3117.716 kb on - strand, within ECD_02971at 3117.716 kb on - strand, within ECD_02971at 3117.791 kb on - strand, within ECD_02971at 3117.831 kb on - strand, within ECD_02971at 3117.831 kb on - strand, within ECD_02971at 3117.881 kb on + strand, within ECD_02971at 3117.881 kb on + strand, within ECD_02971at 3117.906 kb on - strand, within ECD_02971at 3117.906 kb on - strand, within ECD_02971at 3117.907 kb on + strand, within ECD_02971at 3117.908 kb on - strand, within ECD_02971at 3117.908 kb on - strand, within ECD_02971at 3117.908 kb on - strand, within ECD_02971at 3117.938 kb on + strand, within ECD_02971at 3117.938 kb on + strand, within ECD_02971at 3118.079 kb on + strand, within ECD_02971at 3118.079 kb on + strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.080 kb on - strand, within ECD_02971at 3118.103 kb on - strand, within ECD_02971at 3118.126 kb on + strand, within ECD_02971at 3118.155 kb on - strand, within ECD_02971at 3118.155 kb on - strand, within ECD_02971at 3118.208 kb on + strand, within ECD_02971at 3118.208 kb on + strand, within ECD_02971at 3118.209 kb on - strand, within ECD_02971at 3118.222 kb on + strandat 3118.238 kb on - strandat 3118.247 kb on - strandat 3118.322 kb on + strandat 3118.323 kb on - strandat 3118.338 kb on + strandat 3118.343 kb on - strandat 3118.343 kb on - strandat 3118.346 kb on + strandat 3118.346 kb on + strandat 3118.347 kb on - strandat 3118.347 kb on - strandat 3118.347 kb on - strandat 3118.528 kb on + strandat 3118.776 kb on + strand, within ECD_02972at 3118.776 kb on + strand, within ECD_02972at 3118.777 kb on - strand, within ECD_02972at 3118.890 kb on - strand, within ECD_02972at 3118.966 kb on - strandat 3118.966 kb on - strandat 3119.008 kb on - strandat 3119.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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3,116,326 + ECD_02968 0.85 -1.2
3,116,384 + +1.2
3,116,406 - ECD_02969 0.10 +1.9
3,116,508 - ECD_02969 0.44 -0.5
3,116,515 + ECD_02969 0.46 -0.2
3,116,515 + ECD_02969 0.46 +0.2
3,116,515 + ECD_02969 0.46 +0.7
3,116,516 - ECD_02969 0.47 -0.4
3,116,516 - ECD_02969 0.47 -0.7
3,116,579 + ECD_02969 0.68 -0.7
3,116,579 + ECD_02969 0.68 +1.1
3,116,579 + ECD_02969 0.68 +1.2
3,116,580 - ECD_02969 0.68 +4.7
3,116,580 - ECD_02969 0.68 +0.3
3,116,580 - ECD_02969 0.68 +0.0
3,116,580 - ECD_02969 0.68 +1.9
3,116,580 - ECD_02969 0.68 +0.0
3,116,580 - ECD_02969 0.68 -0.7
3,116,580 - ECD_02969 0.68 -0.5
3,116,582 + ECD_02969 0.69 -1.4
3,116,582 + ECD_02969 0.69 +0.6
3,116,583 - ECD_02969 0.69 -1.8
3,116,583 - ECD_02969 0.69 +0.1
3,116,618 - ECD_02969 0.81 -0.4
3,116,674 - -1.6
3,116,800 + +0.7
3,116,801 - -0.6
3,116,801 - -0.0
3,116,802 - +0.3
3,116,860 - -1.4
3,116,969 + ECD_02970 0.27 -0.1
3,116,970 - ECD_02970 0.28 -0.5
3,116,971 + ECD_02970 0.28 -0.1
3,116,971 + ECD_02970 0.28 +1.6
3,116,971 + ECD_02970 0.28 +0.6
3,116,971 + ECD_02970 0.28 +0.0
3,116,999 - ECD_02970 0.35 +0.2
3,116,999 - ECD_02970 0.35 -0.9
3,117,082 + ECD_02970 0.56 -0.6
3,117,220 + +0.6
3,117,220 + -0.2
3,117,251 + +2.2
3,117,264 + +0.6
3,117,264 + +0.8
3,117,265 - +0.5
3,117,494 + ECD_02971 0.17 +0.1
3,117,653 + ECD_02971 0.33 -0.0
3,117,654 - ECD_02971 0.34 +0.6
3,117,680 + ECD_02971 0.36 -0.4
3,117,716 - ECD_02971 0.40 -0.7
3,117,716 - ECD_02971 0.40 +0.1
3,117,791 - ECD_02971 0.47 -0.4
3,117,831 - ECD_02971 0.51 +0.2
3,117,831 - ECD_02971 0.51 -1.3
3,117,881 + ECD_02971 0.57 -0.5
3,117,881 + ECD_02971 0.57 -0.2
3,117,906 - ECD_02971 0.59 -0.7
3,117,906 - ECD_02971 0.59 +0.8
3,117,907 + ECD_02971 0.59 -0.9
3,117,908 - ECD_02971 0.59 +2.0
3,117,908 - ECD_02971 0.59 -0.4
3,117,908 - ECD_02971 0.59 -0.1
3,117,938 + ECD_02971 0.62 -0.7
3,117,938 + ECD_02971 0.62 -0.4
3,118,079 + ECD_02971 0.77 -0.3
3,118,079 + ECD_02971 0.77 +1.6
3,118,080 - ECD_02971 0.77 -0.3
3,118,080 - ECD_02971 0.77 +0.1
3,118,080 - ECD_02971 0.77 +1.2
3,118,080 - ECD_02971 0.77 +0.5
3,118,080 - ECD_02971 0.77 -0.2
3,118,080 - ECD_02971 0.77 -1.2
3,118,080 - ECD_02971 0.77 -0.8
3,118,080 - ECD_02971 0.77 -0.7
3,118,080 - ECD_02971 0.77 -1.4
3,118,080 - ECD_02971 0.77 +1.3
3,118,103 - ECD_02971 0.79 +0.7
3,118,126 + ECD_02971 0.81 +0.4
3,118,155 - ECD_02971 0.84 -1.6
3,118,155 - ECD_02971 0.84 -0.3
3,118,208 + ECD_02971 0.90 -0.5
3,118,208 + ECD_02971 0.90 +0.6
3,118,209 - ECD_02971 0.90 +0.6
3,118,222 + +1.6
3,118,238 - -0.1
3,118,247 - -1.4
3,118,322 + -0.1
3,118,323 - -0.5
3,118,338 + -0.4
3,118,343 - +0.7
3,118,343 - +0.2
3,118,346 + -0.2
3,118,346 + +0.0
3,118,347 - +0.2
3,118,347 - +0.6
3,118,347 - +0.3
3,118,528 + +0.3
3,118,776 + ECD_02972 0.48 -0.2
3,118,776 + ECD_02972 0.48 +1.0
3,118,777 - ECD_02972 0.48 +2.1
3,118,890 - ECD_02972 0.79 +0.1
3,118,966 - -0.6
3,118,966 - +0.6
3,119,008 - -0.5
3,119,106 + -0.4

Or see this region's nucleotide sequence