Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02928 and ECD_02929 are separated by 104 nucleotides ECD_02929 and ECD_02930 are separated by 12 nucleotides ECD_02930 and ECD_02931 are separated by 206 nucleotides
ECD_02928: ECD_02928 - dihydroneopterin aldolase and dihydroneopterin triphosphate 2'-epimerase, at 3,070,303 to 3,070,671
_02928
ECD_02929: ECD_02929 - putative glycerol-3-phosphate acyltransferase, at 3,070,776 to 3,071,393
_02929
ECD_02930: ECD_02930 - transcriptional activator of ttdABT, at 3,071,406 to 3,072,338
_02930
ECD_02931: ECD_02931 - L-tartrate dehydratase, alpha subunit, at 3,072,545 to 3,073,456
_02931
Position (kb)
3071
3072
3073 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3070.726 kb on - strand at 3070.726 kb on - strand at 3070.729 kb on - strand at 3070.775 kb on + strand at 3070.775 kb on + strand at 3070.775 kb on + strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.776 kb on - strand at 3070.915 kb on + strand, within ECD_02929 at 3070.915 kb on + strand, within ECD_02929 at 3070.916 kb on - strand, within ECD_02929 at 3070.916 kb on - strand, within ECD_02929 at 3070.920 kb on - strand, within ECD_02929 at 3070.942 kb on + strand, within ECD_02929 at 3071.002 kb on + strand, within ECD_02929 at 3071.003 kb on - strand, within ECD_02929 at 3071.029 kb on + strand, within ECD_02929 at 3071.029 kb on + strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.030 kb on - strand, within ECD_02929 at 3071.179 kb on + strand, within ECD_02929 at 3071.179 kb on + strand, within ECD_02929 at 3071.180 kb on - strand, within ECD_02929 at 3071.180 kb on - strand, within ECD_02929 at 3071.236 kb on - strand, within ECD_02929 at 3071.250 kb on - strand, within ECD_02929 at 3071.407 kb on + strand at 3071.407 kb on + strand at 3071.529 kb on - strand, within ECD_02930 at 3071.615 kb on + strand, within ECD_02930 at 3071.616 kb on - strand, within ECD_02930 at 3071.616 kb on - strand, within ECD_02930 at 3072.562 kb on + strand at 3072.580 kb on + strand at 3072.654 kb on + strand, within ECD_02931 at 3072.663 kb on + strand, within ECD_02931 at 3072.663 kb on + strand, within ECD_02931 at 3072.698 kb on - strand, within ECD_02931 at 3072.701 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.706 kb on + strand, within ECD_02931 at 3072.707 kb on - strand, within ECD_02931 at 3072.775 kb on + strand, within ECD_02931 at 3072.776 kb on - strand, within ECD_02931 at 3072.776 kb on - strand, within ECD_02931 at 3072.776 kb on - strand, within ECD_02931 at 3072.831 kb on + strand, within ECD_02931 at 3072.874 kb on - strand, within ECD_02931 at 3072.906 kb on + strand, within ECD_02931 at 3072.992 kb on + strand, within ECD_02931 at 3072.993 kb on - strand, within ECD_02931 at 3073.017 kb on + strand, within ECD_02931 at 3073.239 kb on + strand, within ECD_02931 at 3073.240 kb on - strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.314 kb on + strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.315 kb on - strand, within ECD_02931 at 3073.318 kb on + strand, within ECD_02931 at 3073.318 kb on + strand, within ECD_02931
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 3,070,726 - -1.2 3,070,726 - +0.5 3,070,729 - +1.2 3,070,775 + +1.6 3,070,775 + -0.3 3,070,775 + -1.5 3,070,776 - -0.5 3,070,776 - +2.0 3,070,776 - +0.3 3,070,776 - +0.2 3,070,776 - +1.3 3,070,776 - +0.1 3,070,915 + ECD_02929 0.22 -0.9 3,070,915 + ECD_02929 0.22 +0.4 3,070,916 - ECD_02929 0.23 +2.2 3,070,916 - ECD_02929 0.23 +1.5 3,070,920 - ECD_02929 0.23 +0.8 3,070,942 + ECD_02929 0.27 -0.1 3,071,002 + ECD_02929 0.37 -0.3 3,071,003 - ECD_02929 0.37 -0.4 3,071,029 + ECD_02929 0.41 +0.0 3,071,029 + ECD_02929 0.41 +0.2 3,071,030 - ECD_02929 0.41 +0.3 3,071,030 - ECD_02929 0.41 -0.0 3,071,030 - ECD_02929 0.41 -1.5 3,071,179 + ECD_02929 0.65 -0.7 3,071,179 + ECD_02929 0.65 -0.8 3,071,180 - ECD_02929 0.65 +0.9 3,071,180 - ECD_02929 0.65 -0.1 3,071,236 - ECD_02929 0.74 -0.7 3,071,250 - ECD_02929 0.77 -0.1 3,071,407 + +0.4 3,071,407 + -0.5 3,071,529 - ECD_02930 0.13 +0.4 3,071,615 + ECD_02930 0.22 -0.8 3,071,616 - ECD_02930 0.23 -0.6 3,071,616 - ECD_02930 0.23 +0.3 3,072,562 + +0.1 3,072,580 + -1.2 3,072,654 + ECD_02931 0.12 +0.7 3,072,663 + ECD_02931 0.13 -0.8 3,072,663 + ECD_02931 0.13 -1.5 3,072,698 - ECD_02931 0.17 -0.7 3,072,701 + ECD_02931 0.17 -0.3 3,072,706 + ECD_02931 0.18 +2.0 3,072,706 + ECD_02931 0.18 +1.1 3,072,706 + ECD_02931 0.18 -0.2 3,072,706 + ECD_02931 0.18 -0.5 3,072,706 + ECD_02931 0.18 +0.3 3,072,706 + ECD_02931 0.18 -0.2 3,072,707 - ECD_02931 0.18 +0.9 3,072,775 + ECD_02931 0.25 +0.3 3,072,776 - ECD_02931 0.25 +0.9 3,072,776 - ECD_02931 0.25 +2.4 3,072,776 - ECD_02931 0.25 -0.2 3,072,831 + ECD_02931 0.31 +0.1 3,072,874 - ECD_02931 0.36 +1.5 3,072,906 + ECD_02931 0.40 -0.5 3,072,992 + ECD_02931 0.49 -0.1 3,072,993 - ECD_02931 0.49 -0.0 3,073,017 + ECD_02931 0.52 +0.6 3,073,239 + ECD_02931 0.76 +0.1 3,073,240 - ECD_02931 0.76 -1.5 3,073,314 + ECD_02931 0.84 -1.1 3,073,314 + ECD_02931 0.84 -1.4 3,073,314 + ECD_02931 0.84 -0.0 3,073,314 + ECD_02931 0.84 -0.7 3,073,314 + ECD_02931 0.84 -0.6 3,073,314 + ECD_02931 0.84 -0.1 3,073,314 + ECD_02931 0.84 -0.2 3,073,314 + ECD_02931 0.84 +2.0 3,073,314 + ECD_02931 0.84 +0.3 3,073,315 - ECD_02931 0.84 -0.1 3,073,315 - ECD_02931 0.84 +2.3 3,073,315 - ECD_02931 0.84 -2.0 3,073,315 - ECD_02931 0.84 +1.1 3,073,315 - ECD_02931 0.84 -0.4 3,073,318 + ECD_02931 0.85 +2.3 3,073,318 + ECD_02931 0.85 -0.3
Or see this region's nucleotide sequence