Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02793 and ECD_02794 are separated by 201 nucleotides ECD_02794 and ECD_02795 are separated by 48 nucleotides
ECD_02793: ECD_02793 - membrane-bound lytic murein transglycosylase C, at 2,935,201 to 2,936,280
_02793
ECD_02794: ECD_02794 - nucleoside transporter, at 2,936,482 to 2,937,738
_02794
ECD_02795: ECD_02795 - ornithine decarboxylase, constitutive, at 2,937,787 to 2,939,922
_02795
Position (kb)
2936
2937
2938 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2935.509 kb on + strand, within ECD_02793 at 2935.556 kb on - strand, within ECD_02793 at 2935.573 kb on - strand, within ECD_02793 at 2935.601 kb on - strand, within ECD_02793 at 2935.669 kb on + strand, within ECD_02793 at 2935.670 kb on - strand, within ECD_02793 at 2935.713 kb on + strand, within ECD_02793 at 2935.713 kb on + strand, within ECD_02793 at 2935.714 kb on - strand, within ECD_02793 at 2935.720 kb on + strand, within ECD_02793 at 2935.720 kb on + strand, within ECD_02793 at 2935.774 kb on + strand, within ECD_02793 at 2935.774 kb on + strand, within ECD_02793 at 2935.774 kb on + strand, within ECD_02793 at 2935.775 kb on - strand, within ECD_02793 at 2935.807 kb on + strand, within ECD_02793 at 2935.839 kb on + strand, within ECD_02793 at 2935.839 kb on + strand, within ECD_02793 at 2935.840 kb on - strand, within ECD_02793 at 2935.898 kb on + strand, within ECD_02793 at 2935.910 kb on + strand, within ECD_02793 at 2935.911 kb on - strand, within ECD_02793 at 2935.911 kb on - strand, within ECD_02793 at 2935.917 kb on + strand, within ECD_02793 at 2935.917 kb on + strand, within ECD_02793 at 2935.918 kb on - strand, within ECD_02793 at 2935.998 kb on + strand, within ECD_02793 at 2936.041 kb on + strand, within ECD_02793 at 2936.041 kb on + strand, within ECD_02793 at 2936.042 kb on - strand, within ECD_02793 at 2936.096 kb on - strand, within ECD_02793 at 2936.140 kb on - strand, within ECD_02793 at 2936.160 kb on + strand, within ECD_02793 at 2936.160 kb on + strand, within ECD_02793 at 2936.188 kb on + strand at 2936.240 kb on - strand at 2936.240 kb on - strand at 2936.367 kb on + strand at 2936.491 kb on - strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.565 kb on + strand at 2936.565 kb on + strand at 2936.566 kb on - strand at 2936.566 kb on - strand at 2936.575 kb on - strand at 2936.599 kb on - strand at 2936.599 kb on - strand at 2936.599 kb on - strand at 2936.613 kb on + strand, within ECD_02794 at 2936.613 kb on + strand, within ECD_02794 at 2936.640 kb on + strand, within ECD_02794 at 2936.678 kb on + strand, within ECD_02794 at 2936.678 kb on + strand, within ECD_02794 at 2936.693 kb on + strand, within ECD_02794 at 2936.694 kb on - strand, within ECD_02794 at 2936.695 kb on + strand, within ECD_02794 at 2936.695 kb on + strand, within ECD_02794 at 2936.695 kb on + strand, within ECD_02794 at 2936.778 kb on - strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.816 kb on + strand, within ECD_02794 at 2936.833 kb on + strand, within ECD_02794 at 2936.968 kb on + strand, within ECD_02794 at 2936.968 kb on + strand, within ECD_02794 at 2936.969 kb on - strand, within ECD_02794 at 2936.970 kb on + strand, within ECD_02794 at 2936.971 kb on - strand, within ECD_02794 at 2937.109 kb on - strand, within ECD_02794 at 2937.109 kb on - strand, within ECD_02794 at 2937.178 kb on - strand, within ECD_02794 at 2937.321 kb on + strand, within ECD_02794 at 2937.321 kb on + strand, within ECD_02794 at 2937.321 kb on + strand, within ECD_02794 at 2937.322 kb on - strand, within ECD_02794 at 2937.322 kb on - strand, within ECD_02794 at 2937.330 kb on - strand, within ECD_02794 at 2937.330 kb on - strand, within ECD_02794 at 2937.330 kb on - strand, within ECD_02794 at 2937.342 kb on + strand, within ECD_02794 at 2937.407 kb on + strand, within ECD_02794 at 2937.434 kb on - strand, within ECD_02794 at 2937.595 kb on + strand, within ECD_02794 at 2937.595 kb on + strand, within ECD_02794 at 2937.596 kb on - strand, within ECD_02794 at 2937.596 kb on - strand, within ECD_02794 at 2937.629 kb on + strand at 2937.630 kb on - strand at 2937.649 kb on + strand at 2937.650 kb on - strand at 2937.692 kb on - strand at 2937.692 kb on - strand at 2937.693 kb on + strand at 2937.694 kb on - strand at 2937.694 kb on - strand at 2937.694 kb on - strand at 2937.694 kb on - strand at 2937.736 kb on + strand at 2937.737 kb on - strand at 2937.737 kb on - strand at 2937.737 kb on - strand at 2937.740 kb on + strand at 2937.740 kb on + strand at 2937.741 kb on - strand at 2937.741 kb on - strand at 2937.789 kb on - strand at 2937.789 kb on - strand at 2937.800 kb on + strand at 2937.801 kb on - strand at 2937.801 kb on - strand at 2937.801 kb on - strand at 2937.806 kb on + strand at 2937.806 kb on + strand at 2937.843 kb on - strand at 2937.843 kb on - strand at 2937.909 kb on - strand at 2938.044 kb on - strand, within ECD_02795 at 2938.115 kb on - strand, within ECD_02795 at 2938.139 kb on + strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.140 kb on - strand, within ECD_02795 at 2938.199 kb on + strand, within ECD_02795 at 2938.200 kb on - strand, within ECD_02795 at 2938.200 kb on - strand, within ECD_02795 at 2938.200 kb on - strand, within ECD_02795 at 2938.206 kb on + strand, within ECD_02795 at 2938.207 kb on - strand, within ECD_02795 at 2938.208 kb on + strand, within ECD_02795 at 2938.251 kb on + strand, within ECD_02795 at 2938.251 kb on + strand, within ECD_02795 at 2938.318 kb on + strand, within ECD_02795 at 2938.319 kb on - strand, within ECD_02795 at 2938.380 kb on - strand, within ECD_02795 at 2938.417 kb on - strand, within ECD_02795 at 2938.440 kb on + strand, within ECD_02795 at 2938.440 kb on + strand, within ECD_02795 at 2938.441 kb on - strand, within ECD_02795 at 2938.482 kb on - strand, within ECD_02795 at 2938.497 kb on - strand, within ECD_02795 at 2938.574 kb on + strand, within ECD_02795 at 2938.629 kb on + strand, within ECD_02795 at 2938.630 kb on - strand, within ECD_02795
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,935,509 + ECD_02793 0.29 -0.2 2,935,556 - ECD_02793 0.33 +0.5 2,935,573 - ECD_02793 0.34 +0.1 2,935,601 - ECD_02793 0.37 -0.4 2,935,669 + ECD_02793 0.43 -0.1 2,935,670 - ECD_02793 0.43 -0.1 2,935,713 + ECD_02793 0.47 +0.6 2,935,713 + ECD_02793 0.47 -0.7 2,935,714 - ECD_02793 0.47 +0.8 2,935,720 + ECD_02793 0.48 +0.5 2,935,720 + ECD_02793 0.48 +2.3 2,935,774 + ECD_02793 0.53 +0.8 2,935,774 + ECD_02793 0.53 -0.2 2,935,774 + ECD_02793 0.53 -0.1 2,935,775 - ECD_02793 0.53 +0.7 2,935,807 + ECD_02793 0.56 +1.4 2,935,839 + ECD_02793 0.59 -0.2 2,935,839 + ECD_02793 0.59 -0.8 2,935,840 - ECD_02793 0.59 -0.5 2,935,898 + ECD_02793 0.65 +1.0 2,935,910 + ECD_02793 0.66 -0.2 2,935,911 - ECD_02793 0.66 -3.0 2,935,911 - ECD_02793 0.66 -1.1 2,935,917 + ECD_02793 0.66 -0.9 2,935,917 + ECD_02793 0.66 +1.8 2,935,918 - ECD_02793 0.66 +0.2 2,935,998 + ECD_02793 0.74 +1.5 2,936,041 + ECD_02793 0.78 +0.7 2,936,041 + ECD_02793 0.78 +1.9 2,936,042 - ECD_02793 0.78 -0.9 2,936,096 - ECD_02793 0.83 +2.5 2,936,140 - ECD_02793 0.87 -0.5 2,936,160 + ECD_02793 0.89 +1.7 2,936,160 + ECD_02793 0.89 -0.3 2,936,188 + +1.2 2,936,240 - +0.1 2,936,240 - +2.0 2,936,367 + -0.2 2,936,491 - +2.5 2,936,563 + -0.8 2,936,563 + +0.1 2,936,563 + -0.9 2,936,563 + -0.2 2,936,563 + +0.4 2,936,564 - +0.2 2,936,564 - -0.8 2,936,564 - +0.1 2,936,564 - +1.9 2,936,564 - -1.8 2,936,564 - -1.5 2,936,565 + +0.1 2,936,565 + -1.8 2,936,566 - -0.9 2,936,566 - -0.1 2,936,575 - +1.7 2,936,599 - -0.8 2,936,599 - +1.8 2,936,599 - +1.7 2,936,613 + ECD_02794 0.10 +1.7 2,936,613 + ECD_02794 0.10 +0.7 2,936,640 + ECD_02794 0.13 -0.7 2,936,678 + ECD_02794 0.16 -0.2 2,936,678 + ECD_02794 0.16 -0.3 2,936,693 + ECD_02794 0.17 -1.2 2,936,694 - ECD_02794 0.17 -0.3 2,936,695 + ECD_02794 0.17 +0.7 2,936,695 + ECD_02794 0.17 -0.3 2,936,695 + ECD_02794 0.17 +0.8 2,936,778 - ECD_02794 0.24 +1.8 2,936,797 + ECD_02794 0.25 +0.6 2,936,797 + ECD_02794 0.25 +0.0 2,936,797 + ECD_02794 0.25 -0.1 2,936,797 + ECD_02794 0.25 +0.0 2,936,797 + ECD_02794 0.25 -1.1 2,936,797 + ECD_02794 0.25 -1.6 2,936,798 - ECD_02794 0.25 +3.6 2,936,798 - ECD_02794 0.25 +1.0 2,936,798 - ECD_02794 0.25 -0.3 2,936,798 - ECD_02794 0.25 -0.5 2,936,799 + ECD_02794 0.25 +0.0 2,936,799 + ECD_02794 0.25 -0.1 2,936,799 + ECD_02794 0.25 +0.2 2,936,799 + ECD_02794 0.25 +0.0 2,936,800 - ECD_02794 0.25 +0.9 2,936,800 - ECD_02794 0.25 +1.1 2,936,800 - ECD_02794 0.25 +1.1 2,936,800 - ECD_02794 0.25 -0.9 2,936,816 + ECD_02794 0.27 +0.1 2,936,833 + ECD_02794 0.28 -0.5 2,936,968 + ECD_02794 0.39 -1.3 2,936,968 + ECD_02794 0.39 +0.5 2,936,969 - ECD_02794 0.39 +0.9 2,936,970 + ECD_02794 0.39 -0.6 2,936,971 - ECD_02794 0.39 -0.4 2,937,109 - ECD_02794 0.50 +1.7 2,937,109 - ECD_02794 0.50 +2.1 2,937,178 - ECD_02794 0.55 +1.6 2,937,321 + ECD_02794 0.67 +1.7 2,937,321 + ECD_02794 0.67 -0.7 2,937,321 + ECD_02794 0.67 +1.1 2,937,322 - ECD_02794 0.67 +2.0 2,937,322 - ECD_02794 0.67 +1.2 2,937,330 - ECD_02794 0.67 +1.7 2,937,330 - ECD_02794 0.67 +1.1 2,937,330 - ECD_02794 0.67 -1.2 2,937,342 + ECD_02794 0.68 +1.8 2,937,407 + ECD_02794 0.74 -0.2 2,937,434 - ECD_02794 0.76 -1.8 2,937,595 + ECD_02794 0.89 +0.1 2,937,595 + ECD_02794 0.89 -0.1 2,937,596 - ECD_02794 0.89 +2.0 2,937,596 - ECD_02794 0.89 +2.0 2,937,629 + +0.1 2,937,630 - +1.6 2,937,649 + -0.6 2,937,650 - +2.1 2,937,692 - -0.6 2,937,692 - +1.5 2,937,693 + -0.6 2,937,694 - +0.2 2,937,694 - +2.8 2,937,694 - +2.1 2,937,694 - +1.9 2,937,736 + -0.2 2,937,737 - +2.2 2,937,737 - -0.6 2,937,737 - -0.5 2,937,740 + -0.2 2,937,740 + -1.3 2,937,741 - +2.3 2,937,741 - +0.0 2,937,789 - +0.1 2,937,789 - +0.7 2,937,800 + -0.1 2,937,801 - +1.5 2,937,801 - -0.3 2,937,801 - +0.2 2,937,806 + -0.3 2,937,806 + -1.1 2,937,843 - -1.2 2,937,843 - -0.8 2,937,909 - +0.2 2,938,044 - ECD_02795 0.12 +0.6 2,938,115 - ECD_02795 0.15 +0.4 2,938,139 + ECD_02795 0.16 -0.4 2,938,140 - ECD_02795 0.17 -1.6 2,938,140 - ECD_02795 0.17 +1.3 2,938,140 - ECD_02795 0.17 -1.1 2,938,140 - ECD_02795 0.17 +2.0 2,938,140 - ECD_02795 0.17 +2.2 2,938,199 + ECD_02795 0.19 +0.8 2,938,200 - ECD_02795 0.19 -2.2 2,938,200 - ECD_02795 0.19 +1.4 2,938,200 - ECD_02795 0.19 +1.4 2,938,206 + ECD_02795 0.20 +1.8 2,938,207 - ECD_02795 0.20 +1.7 2,938,208 + ECD_02795 0.20 -0.1 2,938,251 + ECD_02795 0.22 -1.9 2,938,251 + ECD_02795 0.22 -0.1 2,938,318 + ECD_02795 0.25 +0.7 2,938,319 - ECD_02795 0.25 -1.0 2,938,380 - ECD_02795 0.28 -0.1 2,938,417 - ECD_02795 0.29 +0.2 2,938,440 + ECD_02795 0.31 -0.7 2,938,440 + ECD_02795 0.31 +1.8 2,938,441 - ECD_02795 0.31 -2.3 2,938,482 - ECD_02795 0.33 +2.9 2,938,497 - ECD_02795 0.33 -0.0 2,938,574 + ECD_02795 0.37 +1.0 2,938,629 + ECD_02795 0.39 +0.0 2,938,630 - ECD_02795 0.39 +0.5
Or see this region's nucleotide sequence