Strain Fitness in Escherichia coli BL21 around ECD_02794

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02793 and ECD_02794 are separated by 201 nucleotidesECD_02794 and ECD_02795 are separated by 48 nucleotides ECD_02793: ECD_02793 - membrane-bound lytic murein transglycosylase C, at 2,935,201 to 2,936,280 _02793 ECD_02794: ECD_02794 - nucleoside transporter, at 2,936,482 to 2,937,738 _02794 ECD_02795: ECD_02795 - ornithine decarboxylase, constitutive, at 2,937,787 to 2,939,922 _02795 Position (kb) 2936 2937 2938Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2935.509 kb on + strand, within ECD_02793at 2935.556 kb on - strand, within ECD_02793at 2935.573 kb on - strand, within ECD_02793at 2935.601 kb on - strand, within ECD_02793at 2935.669 kb on + strand, within ECD_02793at 2935.670 kb on - strand, within ECD_02793at 2935.713 kb on + strand, within ECD_02793at 2935.713 kb on + strand, within ECD_02793at 2935.714 kb on - strand, within ECD_02793at 2935.720 kb on + strand, within ECD_02793at 2935.720 kb on + strand, within ECD_02793at 2935.774 kb on + strand, within ECD_02793at 2935.774 kb on + strand, within ECD_02793at 2935.774 kb on + strand, within ECD_02793at 2935.775 kb on - strand, within ECD_02793at 2935.807 kb on + strand, within ECD_02793at 2935.839 kb on + strand, within ECD_02793at 2935.839 kb on + strand, within ECD_02793at 2935.840 kb on - strand, within ECD_02793at 2935.898 kb on + strand, within ECD_02793at 2935.910 kb on + strand, within ECD_02793at 2935.911 kb on - strand, within ECD_02793at 2935.911 kb on - strand, within ECD_02793at 2935.917 kb on + strand, within ECD_02793at 2935.917 kb on + strand, within ECD_02793at 2935.918 kb on - strand, within ECD_02793at 2935.998 kb on + strand, within ECD_02793at 2936.041 kb on + strand, within ECD_02793at 2936.041 kb on + strand, within ECD_02793at 2936.042 kb on - strand, within ECD_02793at 2936.096 kb on - strand, within ECD_02793at 2936.140 kb on - strand, within ECD_02793at 2936.160 kb on + strand, within ECD_02793at 2936.160 kb on + strand, within ECD_02793at 2936.188 kb on + strandat 2936.240 kb on - strandat 2936.240 kb on - strandat 2936.367 kb on + strandat 2936.491 kb on - strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.563 kb on + strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.564 kb on - strandat 2936.565 kb on + strandat 2936.565 kb on + strandat 2936.566 kb on - strandat 2936.566 kb on - strandat 2936.575 kb on - strandat 2936.599 kb on - strandat 2936.599 kb on - strandat 2936.599 kb on - strandat 2936.613 kb on + strand, within ECD_02794at 2936.613 kb on + strand, within ECD_02794at 2936.640 kb on + strand, within ECD_02794at 2936.678 kb on + strand, within ECD_02794at 2936.678 kb on + strand, within ECD_02794at 2936.693 kb on + strand, within ECD_02794at 2936.694 kb on - strand, within ECD_02794at 2936.695 kb on + strand, within ECD_02794at 2936.695 kb on + strand, within ECD_02794at 2936.695 kb on + strand, within ECD_02794at 2936.778 kb on - strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.797 kb on + strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.798 kb on - strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.799 kb on + strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.800 kb on - strand, within ECD_02794at 2936.816 kb on + strand, within ECD_02794at 2936.833 kb on + strand, within ECD_02794at 2936.968 kb on + strand, within ECD_02794at 2936.968 kb on + strand, within ECD_02794at 2936.969 kb on - strand, within ECD_02794at 2936.970 kb on + strand, within ECD_02794at 2936.971 kb on - strand, within ECD_02794at 2937.109 kb on - strand, within ECD_02794at 2937.109 kb on - strand, within ECD_02794at 2937.178 kb on - strand, within ECD_02794at 2937.321 kb on + strand, within ECD_02794at 2937.321 kb on + strand, within ECD_02794at 2937.321 kb on + strand, within ECD_02794at 2937.322 kb on - strand, within ECD_02794at 2937.322 kb on - strand, within ECD_02794at 2937.330 kb on - strand, within ECD_02794at 2937.330 kb on - strand, within ECD_02794at 2937.330 kb on - strand, within ECD_02794at 2937.342 kb on + strand, within ECD_02794at 2937.407 kb on + strand, within ECD_02794at 2937.434 kb on - strand, within ECD_02794at 2937.595 kb on + strand, within ECD_02794at 2937.595 kb on + strand, within ECD_02794at 2937.596 kb on - strand, within ECD_02794at 2937.596 kb on - strand, within ECD_02794at 2937.629 kb on + strandat 2937.630 kb on - strandat 2937.649 kb on + strandat 2937.650 kb on - strandat 2937.692 kb on - strandat 2937.692 kb on - strandat 2937.693 kb on + strandat 2937.694 kb on - strandat 2937.694 kb on - strandat 2937.694 kb on - strandat 2937.694 kb on - strandat 2937.736 kb on + strandat 2937.737 kb on - strandat 2937.737 kb on - strandat 2937.737 kb on - strandat 2937.740 kb on + strandat 2937.740 kb on + strandat 2937.741 kb on - strandat 2937.741 kb on - strandat 2937.789 kb on - strandat 2937.789 kb on - strandat 2937.800 kb on + strandat 2937.801 kb on - strandat 2937.801 kb on - strandat 2937.801 kb on - strandat 2937.806 kb on + strandat 2937.806 kb on + strandat 2937.843 kb on - strandat 2937.843 kb on - strandat 2937.909 kb on - strandat 2938.044 kb on - strand, within ECD_02795at 2938.115 kb on - strand, within ECD_02795at 2938.139 kb on + strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.140 kb on - strand, within ECD_02795at 2938.199 kb on + strand, within ECD_02795at 2938.200 kb on - strand, within ECD_02795at 2938.200 kb on - strand, within ECD_02795at 2938.200 kb on - strand, within ECD_02795at 2938.206 kb on + strand, within ECD_02795at 2938.207 kb on - strand, within ECD_02795at 2938.208 kb on + strand, within ECD_02795at 2938.251 kb on + strand, within ECD_02795at 2938.251 kb on + strand, within ECD_02795at 2938.318 kb on + strand, within ECD_02795at 2938.319 kb on - strand, within ECD_02795at 2938.380 kb on - strand, within ECD_02795at 2938.417 kb on - strand, within ECD_02795at 2938.440 kb on + strand, within ECD_02795at 2938.440 kb on + strand, within ECD_02795at 2938.441 kb on - strand, within ECD_02795at 2938.482 kb on - strand, within ECD_02795at 2938.497 kb on - strand, within ECD_02795at 2938.574 kb on + strand, within ECD_02795at 2938.629 kb on + strand, within ECD_02795at 2938.630 kb on - strand, within ECD_02795

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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2,935,509 + ECD_02793 0.29 -0.2
2,935,556 - ECD_02793 0.33 +0.5
2,935,573 - ECD_02793 0.34 +0.1
2,935,601 - ECD_02793 0.37 -0.4
2,935,669 + ECD_02793 0.43 -0.1
2,935,670 - ECD_02793 0.43 -0.1
2,935,713 + ECD_02793 0.47 +0.6
2,935,713 + ECD_02793 0.47 -0.7
2,935,714 - ECD_02793 0.47 +0.8
2,935,720 + ECD_02793 0.48 +0.5
2,935,720 + ECD_02793 0.48 +2.3
2,935,774 + ECD_02793 0.53 +0.8
2,935,774 + ECD_02793 0.53 -0.2
2,935,774 + ECD_02793 0.53 -0.1
2,935,775 - ECD_02793 0.53 +0.7
2,935,807 + ECD_02793 0.56 +1.4
2,935,839 + ECD_02793 0.59 -0.2
2,935,839 + ECD_02793 0.59 -0.8
2,935,840 - ECD_02793 0.59 -0.5
2,935,898 + ECD_02793 0.65 +1.0
2,935,910 + ECD_02793 0.66 -0.2
2,935,911 - ECD_02793 0.66 -3.0
2,935,911 - ECD_02793 0.66 -1.1
2,935,917 + ECD_02793 0.66 -0.9
2,935,917 + ECD_02793 0.66 +1.8
2,935,918 - ECD_02793 0.66 +0.2
2,935,998 + ECD_02793 0.74 +1.5
2,936,041 + ECD_02793 0.78 +0.7
2,936,041 + ECD_02793 0.78 +1.9
2,936,042 - ECD_02793 0.78 -0.9
2,936,096 - ECD_02793 0.83 +2.5
2,936,140 - ECD_02793 0.87 -0.5
2,936,160 + ECD_02793 0.89 +1.7
2,936,160 + ECD_02793 0.89 -0.3
2,936,188 + +1.2
2,936,240 - +0.1
2,936,240 - +2.0
2,936,367 + -0.2
2,936,491 - +2.5
2,936,563 + -0.8
2,936,563 + +0.1
2,936,563 + -0.9
2,936,563 + -0.2
2,936,563 + +0.4
2,936,564 - +0.2
2,936,564 - -0.8
2,936,564 - +0.1
2,936,564 - +1.9
2,936,564 - -1.8
2,936,564 - -1.5
2,936,565 + +0.1
2,936,565 + -1.8
2,936,566 - -0.9
2,936,566 - -0.1
2,936,575 - +1.7
2,936,599 - -0.8
2,936,599 - +1.8
2,936,599 - +1.7
2,936,613 + ECD_02794 0.10 +1.7
2,936,613 + ECD_02794 0.10 +0.7
2,936,640 + ECD_02794 0.13 -0.7
2,936,678 + ECD_02794 0.16 -0.2
2,936,678 + ECD_02794 0.16 -0.3
2,936,693 + ECD_02794 0.17 -1.2
2,936,694 - ECD_02794 0.17 -0.3
2,936,695 + ECD_02794 0.17 +0.7
2,936,695 + ECD_02794 0.17 -0.3
2,936,695 + ECD_02794 0.17 +0.8
2,936,778 - ECD_02794 0.24 +1.8
2,936,797 + ECD_02794 0.25 +0.6
2,936,797 + ECD_02794 0.25 +0.0
2,936,797 + ECD_02794 0.25 -0.1
2,936,797 + ECD_02794 0.25 +0.0
2,936,797 + ECD_02794 0.25 -1.1
2,936,797 + ECD_02794 0.25 -1.6
2,936,798 - ECD_02794 0.25 +3.6
2,936,798 - ECD_02794 0.25 +1.0
2,936,798 - ECD_02794 0.25 -0.3
2,936,798 - ECD_02794 0.25 -0.5
2,936,799 + ECD_02794 0.25 +0.0
2,936,799 + ECD_02794 0.25 -0.1
2,936,799 + ECD_02794 0.25 +0.2
2,936,799 + ECD_02794 0.25 +0.0
2,936,800 - ECD_02794 0.25 +0.9
2,936,800 - ECD_02794 0.25 +1.1
2,936,800 - ECD_02794 0.25 +1.1
2,936,800 - ECD_02794 0.25 -0.9
2,936,816 + ECD_02794 0.27 +0.1
2,936,833 + ECD_02794 0.28 -0.5
2,936,968 + ECD_02794 0.39 -1.3
2,936,968 + ECD_02794 0.39 +0.5
2,936,969 - ECD_02794 0.39 +0.9
2,936,970 + ECD_02794 0.39 -0.6
2,936,971 - ECD_02794 0.39 -0.4
2,937,109 - ECD_02794 0.50 +1.7
2,937,109 - ECD_02794 0.50 +2.1
2,937,178 - ECD_02794 0.55 +1.6
2,937,321 + ECD_02794 0.67 +1.7
2,937,321 + ECD_02794 0.67 -0.7
2,937,321 + ECD_02794 0.67 +1.1
2,937,322 - ECD_02794 0.67 +2.0
2,937,322 - ECD_02794 0.67 +1.2
2,937,330 - ECD_02794 0.67 +1.7
2,937,330 - ECD_02794 0.67 +1.1
2,937,330 - ECD_02794 0.67 -1.2
2,937,342 + ECD_02794 0.68 +1.8
2,937,407 + ECD_02794 0.74 -0.2
2,937,434 - ECD_02794 0.76 -1.8
2,937,595 + ECD_02794 0.89 +0.1
2,937,595 + ECD_02794 0.89 -0.1
2,937,596 - ECD_02794 0.89 +2.0
2,937,596 - ECD_02794 0.89 +2.0
2,937,629 + +0.1
2,937,630 - +1.6
2,937,649 + -0.6
2,937,650 - +2.1
2,937,692 - -0.6
2,937,692 - +1.5
2,937,693 + -0.6
2,937,694 - +0.2
2,937,694 - +2.8
2,937,694 - +2.1
2,937,694 - +1.9
2,937,736 + -0.2
2,937,737 - +2.2
2,937,737 - -0.6
2,937,737 - -0.5
2,937,740 + -0.2
2,937,740 + -1.3
2,937,741 - +2.3
2,937,741 - +0.0
2,937,789 - +0.1
2,937,789 - +0.7
2,937,800 + -0.1
2,937,801 - +1.5
2,937,801 - -0.3
2,937,801 - +0.2
2,937,806 + -0.3
2,937,806 + -1.1
2,937,843 - -1.2
2,937,843 - -0.8
2,937,909 - +0.2
2,938,044 - ECD_02795 0.12 +0.6
2,938,115 - ECD_02795 0.15 +0.4
2,938,139 + ECD_02795 0.16 -0.4
2,938,140 - ECD_02795 0.17 -1.6
2,938,140 - ECD_02795 0.17 +1.3
2,938,140 - ECD_02795 0.17 -1.1
2,938,140 - ECD_02795 0.17 +2.0
2,938,140 - ECD_02795 0.17 +2.2
2,938,199 + ECD_02795 0.19 +0.8
2,938,200 - ECD_02795 0.19 -2.2
2,938,200 - ECD_02795 0.19 +1.4
2,938,200 - ECD_02795 0.19 +1.4
2,938,206 + ECD_02795 0.20 +1.8
2,938,207 - ECD_02795 0.20 +1.7
2,938,208 + ECD_02795 0.20 -0.1
2,938,251 + ECD_02795 0.22 -1.9
2,938,251 + ECD_02795 0.22 -0.1
2,938,318 + ECD_02795 0.25 +0.7
2,938,319 - ECD_02795 0.25 -1.0
2,938,380 - ECD_02795 0.28 -0.1
2,938,417 - ECD_02795 0.29 +0.2
2,938,440 + ECD_02795 0.31 -0.7
2,938,440 + ECD_02795 0.31 +1.8
2,938,441 - ECD_02795 0.31 -2.3
2,938,482 - ECD_02795 0.33 +2.9
2,938,497 - ECD_02795 0.33 -0.0
2,938,574 + ECD_02795 0.37 +1.0
2,938,629 + ECD_02795 0.39 +0.0
2,938,630 - ECD_02795 0.39 +0.5

Or see this region's nucleotide sequence