Strain Fitness in Escherichia coli BL21 around ECD_02783

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02781 and ECD_02782 are separated by 17 nucleotidesECD_02782 and ECD_02783 overlap by 4 nucleotidesECD_02783 and ECD_02784 are separated by 7 nucleotidesECD_02784 and ECD_02785 overlap by 8 nucleotides ECD_02781: ECD_02781 - UPF0001 family protein, PLP-binding, at 2,925,956 to 2,926,660 _02781 ECD_02782: ECD_02782 - putative inner membrane protein; compensates for loss in K+ uptake, at 2,926,678 to 2,927,244 _02782 ECD_02783: ECD_02783 - UPF0235 family protein, at 2,927,241 to 2,927,531 _02783 ECD_02784: ECD_02784 - dITP/XTP pyrophosphatase, at 2,927,539 to 2,928,132 _02784 ECD_02785: ECD_02785 - HemN family putative oxidoreductase, at 2,928,125 to 2,929,261 _02785 Position (kb) 2927 2928Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2926.258 kb on + strand, within ECD_02781at 2926.258 kb on + strand, within ECD_02781at 2926.363 kb on + strand, within ECD_02781at 2926.419 kb on + strand, within ECD_02781at 2926.472 kb on + strand, within ECD_02781at 2926.472 kb on + strand, within ECD_02781at 2926.472 kb on + strand, within ECD_02781at 2926.473 kb on - strand, within ECD_02781at 2926.473 kb on - strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.476 kb on + strand, within ECD_02781at 2926.477 kb on - strand, within ECD_02781at 2926.509 kb on + strand, within ECD_02781at 2926.600 kb on + strandat 2926.722 kb on + strandat 2926.885 kb on + strand, within ECD_02782at 2927.286 kb on + strand, within ECD_02783at 2927.286 kb on + strand, within ECD_02783at 2927.287 kb on - strand, within ECD_02783at 2927.288 kb on + strand, within ECD_02783at 2927.315 kb on + strand, within ECD_02783at 2927.315 kb on + strand, within ECD_02783at 2927.316 kb on - strand, within ECD_02783at 2927.326 kb on + strand, within ECD_02783at 2927.326 kb on + strand, within ECD_02783at 2927.525 kb on + strandat 2927.525 kb on + strandat 2927.529 kb on + strandat 2927.529 kb on + strandat 2927.533 kb on + strandat 2927.533 kb on + strandat 2927.538 kb on + strandat 2927.538 kb on + strandat 2928.120 kb on - strandat 2928.123 kb on + strandat 2928.123 kb on + strandat 2928.123 kb on + strandat 2928.124 kb on - strandat 2928.152 kb on + strandat 2928.152 kb on + strandat 2928.152 kb on + strandat 2928.239 kb on + strand, within ECD_02785at 2928.239 kb on + strand, within ECD_02785at 2928.240 kb on - strand, within ECD_02785at 2928.240 kb on - strand, within ECD_02785at 2928.413 kb on - strand, within ECD_02785at 2928.415 kb on + strand, within ECD_02785at 2928.439 kb on - strand, within ECD_02785

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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2,926,258 + ECD_02781 0.43 -0.1
2,926,258 + ECD_02781 0.43 +3.1
2,926,363 + ECD_02781 0.58 +0.7
2,926,419 + ECD_02781 0.66 +1.1
2,926,472 + ECD_02781 0.73 +0.4
2,926,472 + ECD_02781 0.73 -0.2
2,926,472 + ECD_02781 0.73 +1.8
2,926,473 - ECD_02781 0.73 +0.2
2,926,473 - ECD_02781 0.73 -1.9
2,926,476 + ECD_02781 0.74 -0.7
2,926,476 + ECD_02781 0.74 +0.4
2,926,476 + ECD_02781 0.74 +0.0
2,926,476 + ECD_02781 0.74 +0.3
2,926,476 + ECD_02781 0.74 -0.1
2,926,476 + ECD_02781 0.74 +1.2
2,926,477 - ECD_02781 0.74 -2.1
2,926,509 + ECD_02781 0.78 -0.5
2,926,600 + +1.7
2,926,722 + +1.9
2,926,885 + ECD_02782 0.37 +1.5
2,927,286 + ECD_02783 0.15 +0.6
2,927,286 + ECD_02783 0.15 -0.4
2,927,287 - ECD_02783 0.16 +1.4
2,927,288 + ECD_02783 0.16 -0.5
2,927,315 + ECD_02783 0.25 -0.7
2,927,315 + ECD_02783 0.25 +2.5
2,927,316 - ECD_02783 0.26 +0.5
2,927,326 + ECD_02783 0.29 +2.0
2,927,326 + ECD_02783 0.29 +2.6
2,927,525 + +0.7
2,927,525 + +0.2
2,927,529 + +2.6
2,927,529 + -0.7
2,927,533 + -0.2
2,927,533 + -1.3
2,927,538 + -0.6
2,927,538 + -1.0
2,928,120 - -0.5
2,928,123 + +0.4
2,928,123 + +0.4
2,928,123 + -1.8
2,928,124 - +1.2
2,928,152 + -0.4
2,928,152 + -1.1
2,928,152 + +2.2
2,928,239 + ECD_02785 0.10 -1.4
2,928,239 + ECD_02785 0.10 +1.7
2,928,240 - ECD_02785 0.10 +2.4
2,928,240 - ECD_02785 0.10 +0.7
2,928,413 - ECD_02785 0.25 +0.6
2,928,415 + ECD_02785 0.26 -0.0
2,928,439 - ECD_02785 0.28 -0.8

Or see this region's nucleotide sequence