Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02781 and ECD_02782 are separated by 17 nucleotides ECD_02782 and ECD_02783 overlap by 4 nucleotides ECD_02783 and ECD_02784 are separated by 7 nucleotides ECD_02784 and ECD_02785 overlap by 8 nucleotides
ECD_02781: ECD_02781 - UPF0001 family protein, PLP-binding, at 2,925,956 to 2,926,660
_02781
ECD_02782: ECD_02782 - putative inner membrane protein; compensates for loss in K+ uptake, at 2,926,678 to 2,927,244
_02782
ECD_02783: ECD_02783 - UPF0235 family protein, at 2,927,241 to 2,927,531
_02783
ECD_02784: ECD_02784 - dITP/XTP pyrophosphatase, at 2,927,539 to 2,928,132
_02784
ECD_02785: ECD_02785 - HemN family putative oxidoreductase, at 2,928,125 to 2,929,261
_02785
Position (kb)
2927
2928 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2926.258 kb on + strand, within ECD_02781 at 2926.258 kb on + strand, within ECD_02781 at 2926.363 kb on + strand, within ECD_02781 at 2926.419 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.473 kb on - strand, within ECD_02781 at 2926.473 kb on - strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.477 kb on - strand, within ECD_02781 at 2926.509 kb on + strand, within ECD_02781 at 2926.600 kb on + strand at 2926.722 kb on + strand at 2926.885 kb on + strand, within ECD_02782 at 2927.286 kb on + strand, within ECD_02783 at 2927.286 kb on + strand, within ECD_02783 at 2927.287 kb on - strand, within ECD_02783 at 2927.288 kb on + strand, within ECD_02783 at 2927.315 kb on + strand, within ECD_02783 at 2927.315 kb on + strand, within ECD_02783 at 2927.316 kb on - strand, within ECD_02783 at 2927.326 kb on + strand, within ECD_02783 at 2927.326 kb on + strand, within ECD_02783 at 2927.525 kb on + strand at 2927.525 kb on + strand at 2927.529 kb on + strand at 2927.529 kb on + strand at 2927.533 kb on + strand at 2927.533 kb on + strand at 2927.538 kb on + strand at 2927.538 kb on + strand at 2928.120 kb on - strand at 2928.123 kb on + strand at 2928.123 kb on + strand at 2928.123 kb on + strand at 2928.124 kb on - strand at 2928.152 kb on + strand at 2928.152 kb on + strand at 2928.152 kb on + strand at 2928.239 kb on + strand, within ECD_02785 at 2928.239 kb on + strand, within ECD_02785 at 2928.240 kb on - strand, within ECD_02785 at 2928.240 kb on - strand, within ECD_02785 at 2928.413 kb on - strand, within ECD_02785 at 2928.415 kb on + strand, within ECD_02785 at 2928.439 kb on - strand, within ECD_02785
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,926,258 + ECD_02781 0.43 -0.1 2,926,258 + ECD_02781 0.43 +3.1 2,926,363 + ECD_02781 0.58 +0.7 2,926,419 + ECD_02781 0.66 +1.1 2,926,472 + ECD_02781 0.73 +0.4 2,926,472 + ECD_02781 0.73 -0.2 2,926,472 + ECD_02781 0.73 +1.8 2,926,473 - ECD_02781 0.73 +0.2 2,926,473 - ECD_02781 0.73 -1.9 2,926,476 + ECD_02781 0.74 -0.7 2,926,476 + ECD_02781 0.74 +0.4 2,926,476 + ECD_02781 0.74 +0.0 2,926,476 + ECD_02781 0.74 +0.3 2,926,476 + ECD_02781 0.74 -0.1 2,926,476 + ECD_02781 0.74 +1.2 2,926,477 - ECD_02781 0.74 -2.1 2,926,509 + ECD_02781 0.78 -0.5 2,926,600 + +1.7 2,926,722 + +1.9 2,926,885 + ECD_02782 0.37 +1.5 2,927,286 + ECD_02783 0.15 +0.6 2,927,286 + ECD_02783 0.15 -0.4 2,927,287 - ECD_02783 0.16 +1.4 2,927,288 + ECD_02783 0.16 -0.5 2,927,315 + ECD_02783 0.25 -0.7 2,927,315 + ECD_02783 0.25 +2.5 2,927,316 - ECD_02783 0.26 +0.5 2,927,326 + ECD_02783 0.29 +2.0 2,927,326 + ECD_02783 0.29 +2.6 2,927,525 + +0.7 2,927,525 + +0.2 2,927,529 + +2.6 2,927,529 + -0.7 2,927,533 + -0.2 2,927,533 + -1.3 2,927,538 + -0.6 2,927,538 + -1.0 2,928,120 - -0.5 2,928,123 + +0.4 2,928,123 + +0.4 2,928,123 + -1.8 2,928,124 - +1.2 2,928,152 + -0.4 2,928,152 + -1.1 2,928,152 + +2.2 2,928,239 + ECD_02785 0.10 -1.4 2,928,239 + ECD_02785 0.10 +1.7 2,928,240 - ECD_02785 0.10 +2.4 2,928,240 - ECD_02785 0.10 +0.7 2,928,413 - ECD_02785 0.25 +0.6 2,928,415 + ECD_02785 0.26 -0.0 2,928,439 - ECD_02785 0.28 -0.8
Or see this region's nucleotide sequence