Strain Fitness in Escherichia coli BL21 around ECD_02771

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02768 and ECD_02769 are separated by 8 nucleotidesECD_02769 and ECD_02770 are separated by 135 nucleotidesECD_02770 and ECD_02771 overlap by 4 nucleotidesECD_02771 and ECD_02772 are separated by 55 nucleotides ECD_02768: ECD_02768 - biosynthetic arginine decarboxylase, PLP-binding, at 2,914,793 to 2,916,769 _02768 ECD_02769: ECD_02769 - uncharacterized protein, at 2,916,778 to 2,916,909 _02769 ECD_02770: ECD_02770 - uncharacterized protein, at 2,917,045 to 2,917,260 _02770 ECD_02771: ECD_02771 - putative inner membrane protein, at 2,917,257 to 2,917,508 _02771 ECD_02772: ECD_02772 - S-adenosylmethionine synthetase, at 2,917,564 to 2,918,718 _02772 Position (kb) 2917 2918Strain fitness (log2 ratio) -1 0 1 2 3 4at 2916.399 kb on + strand, within ECD_02768at 2916.411 kb on + strand, within ECD_02768at 2916.546 kb on - strand, within ECD_02768at 2916.546 kb on - strand, within ECD_02768at 2916.546 kb on - strand, within ECD_02768at 2916.599 kb on - strandat 2916.627 kb on + strandat 2916.627 kb on + strandat 2916.627 kb on + strandat 2916.627 kb on + strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.628 kb on - strandat 2916.631 kb on + strandat 2916.632 kb on - strandat 2916.632 kb on - strandat 2916.650 kb on - strandat 2916.654 kb on + strandat 2916.655 kb on - strandat 2916.655 kb on - strandat 2916.655 kb on - strandat 2916.655 kb on - strandat 2916.714 kb on - strandat 2916.714 kb on - strandat 2916.714 kb on - strandat 2916.717 kb on - strandat 2916.717 kb on - strandat 2916.770 kb on - strandat 2916.785 kb on - strandat 2916.793 kb on - strand, within ECD_02769at 2916.793 kb on - strand, within ECD_02769at 2916.799 kb on - strand, within ECD_02769at 2916.937 kb on - strandat 2916.937 kb on - strandat 2916.937 kb on - strandat 2916.980 kb on - strandat 2916.980 kb on - strandat 2917.013 kb on + strandat 2917.014 kb on - strandat 2917.050 kb on + strandat 2917.050 kb on + strandat 2917.051 kb on - strandat 2917.051 kb on - strandat 2917.051 kb on - strandat 2917.065 kb on + strandat 2917.147 kb on + strand, within ECD_02770at 2917.148 kb on - strand, within ECD_02770at 2917.148 kb on - strand, within ECD_02770at 2917.148 kb on - strand, within ECD_02770at 2917.155 kb on - strand, within ECD_02770at 2917.155 kb on - strand, within ECD_02770at 2917.177 kb on - strand, within ECD_02770at 2917.278 kb on - strandat 2917.278 kb on - strandat 2917.278 kb on - strandat 2917.278 kb on - strandat 2917.278 kb on - strandat 2917.280 kb on - strandat 2917.309 kb on + strand, within ECD_02771at 2917.310 kb on - strand, within ECD_02771at 2917.395 kb on + strand, within ECD_02771at 2917.395 kb on + strand, within ECD_02771at 2917.451 kb on + strand, within ECD_02771at 2917.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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2,916,399 + ECD_02768 0.81 +0.9
2,916,411 + ECD_02768 0.82 +0.9
2,916,546 - ECD_02768 0.89 +2.1
2,916,546 - ECD_02768 0.89 +2.3
2,916,546 - ECD_02768 0.89 -0.1
2,916,599 - +1.6
2,916,627 + +0.3
2,916,627 + +1.7
2,916,627 + +0.8
2,916,627 + +1.4
2,916,628 - +1.8
2,916,628 - +1.6
2,916,628 - +2.4
2,916,628 - +1.9
2,916,628 - +0.9
2,916,628 - +1.4
2,916,628 - +2.0
2,916,628 - +1.3
2,916,628 - +1.5
2,916,628 - +2.3
2,916,628 - +1.5
2,916,631 + +1.4
2,916,632 - +1.2
2,916,632 - +0.3
2,916,650 - +0.6
2,916,654 + +4.4
2,916,655 - +1.4
2,916,655 - +1.6
2,916,655 - -1.6
2,916,655 - +1.2
2,916,714 - +1.5
2,916,714 - +2.2
2,916,714 - +2.0
2,916,717 - +0.7
2,916,717 - +1.0
2,916,770 - +0.9
2,916,785 - +0.4
2,916,793 - ECD_02769 0.11 -1.1
2,916,793 - ECD_02769 0.11 +2.2
2,916,799 - ECD_02769 0.16 -0.1
2,916,937 - -0.5
2,916,937 - +1.9
2,916,937 - -0.2
2,916,980 - +0.0
2,916,980 - +1.7
2,917,013 + +0.6
2,917,014 - +0.1
2,917,050 + +2.8
2,917,050 + -0.4
2,917,051 - +2.0
2,917,051 - -0.2
2,917,051 - -1.2
2,917,065 + +0.9
2,917,147 + ECD_02770 0.47 -0.3
2,917,148 - ECD_02770 0.48 +2.4
2,917,148 - ECD_02770 0.48 -0.1
2,917,148 - ECD_02770 0.48 +2.0
2,917,155 - ECD_02770 0.51 +2.2
2,917,155 - ECD_02770 0.51 -0.8
2,917,177 - ECD_02770 0.61 +1.0
2,917,278 - -0.1
2,917,278 - +1.2
2,917,278 - -1.3
2,917,278 - +1.4
2,917,278 - +0.2
2,917,280 - +0.4
2,917,309 + ECD_02771 0.21 +0.0
2,917,310 - ECD_02771 0.21 +0.2
2,917,395 + ECD_02771 0.55 -0.5
2,917,395 + ECD_02771 0.55 +2.1
2,917,451 + ECD_02771 0.77 -1.2
2,917,493 + +2.0

Or see this region's nucleotide sequence