Strain Fitness in Escherichia coli BL21 around ECD_02694

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02693 and ECD_02694 are separated by 459 nucleotidesECD_02694 and ECD_02695 are separated by 37 nucleotidesECD_02695 and ECD_02696 are separated by 56 nucleotides ECD_02693: ECD_02693 - putative transporter, at 2,825,576 to 2,826,805 _02693 ECD_02694: ECD_02694 - putative LuxR family transcriptional regulator, at 2,827,265 to 2,827,834 _02694 ECD_02695: ECD_02695 - putative transposase-related protein, at 2,827,872 to 2,828,180 _02695 ECD_02696: ECD_02696 - putative transposase for IS3, at 2,828,237 to 2,829,043 _02696 Position (kb) 2827 2828Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2826.303 kb on + strand, within ECD_02693at 2826.303 kb on + strand, within ECD_02693at 2826.304 kb on - strand, within ECD_02693at 2826.304 kb on - strand, within ECD_02693at 2826.353 kb on + strand, within ECD_02693at 2826.403 kb on + strand, within ECD_02693at 2826.403 kb on + strand, within ECD_02693at 2826.445 kb on + strand, within ECD_02693at 2826.456 kb on + strand, within ECD_02693at 2826.488 kb on + strand, within ECD_02693at 2826.534 kb on + strand, within ECD_02693at 2826.569 kb on - strand, within ECD_02693at 2826.580 kb on - strand, within ECD_02693at 2826.586 kb on + strand, within ECD_02693at 2826.586 kb on + strand, within ECD_02693at 2826.587 kb on - strand, within ECD_02693at 2826.587 kb on - strand, within ECD_02693at 2826.587 kb on - strand, within ECD_02693at 2826.605 kb on - strand, within ECD_02693at 2826.651 kb on - strand, within ECD_02693at 2826.681 kb on + strand, within ECD_02693at 2826.681 kb on + strand, within ECD_02693at 2826.698 kb on - strandat 2826.800 kb on - strandat 2826.807 kb on - strandat 2826.807 kb on - strandat 2826.954 kb on - strandat 2826.958 kb on - strandat 2826.958 kb on - strandat 2827.242 kb on - strandat 2827.526 kb on + strand, within ECD_02694at 2827.815 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
2,826,303 + ECD_02693 0.59 +1.8
2,826,303 + ECD_02693 0.59 -0.8
2,826,304 - ECD_02693 0.59 -0.9
2,826,304 - ECD_02693 0.59 +0.5
2,826,353 + ECD_02693 0.63 +0.1
2,826,403 + ECD_02693 0.67 +0.2
2,826,403 + ECD_02693 0.67 -0.1
2,826,445 + ECD_02693 0.71 -0.4
2,826,456 + ECD_02693 0.72 +0.8
2,826,488 + ECD_02693 0.74 -0.5
2,826,534 + ECD_02693 0.78 -0.6
2,826,569 - ECD_02693 0.81 +0.6
2,826,580 - ECD_02693 0.82 -1.2
2,826,586 + ECD_02693 0.82 -1.8
2,826,586 + ECD_02693 0.82 -0.8
2,826,587 - ECD_02693 0.82 -0.8
2,826,587 - ECD_02693 0.82 -2.4
2,826,587 - ECD_02693 0.82 +0.7
2,826,605 - ECD_02693 0.84 -0.4
2,826,651 - ECD_02693 0.87 -2.8
2,826,681 + ECD_02693 0.90 -0.5
2,826,681 + ECD_02693 0.90 -1.0
2,826,698 - +2.2
2,826,800 - -0.6
2,826,807 - +1.9
2,826,807 - +2.5
2,826,954 - -0.7
2,826,958 - +0.5
2,826,958 - -1.2
2,827,242 - -1.3
2,827,526 + ECD_02694 0.46 -0.8
2,827,815 - +0.3

Or see this region's nucleotide sequence