Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02640 and ECD_02641 are separated by 556 nucleotides ECD_02641 and ECD_02642 are separated by 57 nucleotides
ECD_02640: ECD_02640 - UPF0717 family protein, at 2,758,898 to 2,760,262
_02640
ECD_02641: ECD_02641 - putative serine transporter, at 2,760,819 to 2,762,108
_02641
ECD_02642: ECD_02642 - L-serine dehydratase 2, at 2,762,166 to 2,763,533
_02642
Position (kb)
2760
2761
2762
2763 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2759.944 kb on + strand, within ECD_02640 at 2759.944 kb on + strand, within ECD_02640 at 2759.944 kb on + strand, within ECD_02640 at 2760.005 kb on - strand, within ECD_02640 at 2760.096 kb on + strand, within ECD_02640 at 2760.096 kb on + strand, within ECD_02640 at 2760.096 kb on + strand, within ECD_02640 at 2760.096 kb on + strand, within ECD_02640 at 2760.097 kb on - strand, within ECD_02640 at 2760.097 kb on - strand, within ECD_02640 at 2760.154 kb on + strand at 2760.163 kb on + strand at 2760.163 kb on + strand at 2760.164 kb on - strand at 2760.186 kb on + strand at 2760.212 kb on - strand at 2760.233 kb on + strand at 2760.234 kb on - strand at 2760.234 kb on - strand at 2760.260 kb on + strand at 2760.261 kb on - strand at 2760.261 kb on - strand at 2760.261 kb on - strand at 2760.315 kb on + strand at 2760.315 kb on + strand at 2760.316 kb on - strand at 2760.316 kb on - strand at 2760.316 kb on - strand at 2760.316 kb on - strand at 2760.316 kb on - strand at 2760.375 kb on - strand at 2760.448 kb on - strand at 2760.480 kb on - strand at 2760.511 kb on + strand at 2760.515 kb on + strand at 2760.515 kb on + strand at 2760.516 kb on - strand at 2760.517 kb on + strand at 2760.518 kb on - strand at 2760.629 kb on + strand at 2760.665 kb on + strand at 2760.665 kb on + strand at 2760.669 kb on + strand at 2760.669 kb on + strand at 2760.718 kb on + strand at 2760.794 kb on - strand at 2760.816 kb on + strand at 2760.816 kb on + strand at 2760.816 kb on + strand at 2760.989 kb on + strand, within ECD_02641 at 2761.042 kb on + strand, within ECD_02641 at 2761.042 kb on + strand, within ECD_02641 at 2761.042 kb on + strand, within ECD_02641 at 2761.084 kb on + strand, within ECD_02641 at 2761.084 kb on + strand, within ECD_02641 at 2761.131 kb on + strand, within ECD_02641 at 2761.131 kb on + strand, within ECD_02641 at 2761.146 kb on + strand, within ECD_02641 at 2761.164 kb on + strand, within ECD_02641 at 2761.164 kb on + strand, within ECD_02641 at 2761.164 kb on + strand, within ECD_02641 at 2761.166 kb on + strand, within ECD_02641 at 2761.167 kb on - strand, within ECD_02641 at 2761.184 kb on + strand, within ECD_02641 at 2761.185 kb on - strand, within ECD_02641 at 2761.304 kb on + strand, within ECD_02641 at 2761.316 kb on + strand, within ECD_02641 at 2761.316 kb on + strand, within ECD_02641 at 2761.316 kb on + strand, within ECD_02641 at 2761.317 kb on - strand, within ECD_02641 at 2761.342 kb on + strand, within ECD_02641 at 2761.362 kb on + strand, within ECD_02641 at 2761.362 kb on + strand, within ECD_02641 at 2761.603 kb on + strand, within ECD_02641 at 2761.627 kb on + strand, within ECD_02641 at 2761.779 kb on + strand, within ECD_02641 at 2761.817 kb on + strand, within ECD_02641 at 2761.817 kb on + strand, within ECD_02641 at 2761.818 kb on - strand, within ECD_02641 at 2761.818 kb on - strand, within ECD_02641 at 2761.838 kb on + strand, within ECD_02641 at 2761.838 kb on + strand, within ECD_02641 at 2761.838 kb on + strand, within ECD_02641 at 2761.838 kb on + strand, within ECD_02641 at 2761.838 kb on + strand, within ECD_02641 at 2761.992 kb on + strand at 2761.992 kb on + strand at 2762.021 kb on + strand at 2762.021 kb on + strand at 2762.021 kb on + strand at 2762.021 kb on + strand at 2762.021 kb on + strand at 2762.021 kb on + strand at 2762.021 kb on + strand at 2762.025 kb on + strand at 2762.025 kb on + strand at 2762.025 kb on + strand at 2762.047 kb on + strand at 2762.047 kb on + strand at 2762.047 kb on + strand at 2762.047 kb on + strand at 2762.047 kb on + strand at 2762.091 kb on + strand at 2762.091 kb on + strand at 2762.092 kb on - strand at 2762.092 kb on - strand at 2762.106 kb on + strand at 2762.106 kb on + strand at 2762.107 kb on - strand at 2762.158 kb on + strand at 2762.158 kb on + strand at 2762.159 kb on - strand at 2762.159 kb on - strand at 2762.183 kb on + strand at 2762.219 kb on + strand at 2762.282 kb on + strand at 2762.282 kb on + strand at 2762.363 kb on + strand, within ECD_02642 at 2762.363 kb on + strand, within ECD_02642 at 2762.363 kb on + strand, within ECD_02642 at 2762.364 kb on - strand, within ECD_02642 at 2762.364 kb on - strand, within ECD_02642 at 2762.367 kb on - strand, within ECD_02642 at 2762.393 kb on + strand, within ECD_02642 at 2762.423 kb on + strand, within ECD_02642 at 2762.439 kb on - strand, within ECD_02642 at 2762.439 kb on - strand, within ECD_02642 at 2762.552 kb on + strand, within ECD_02642 at 2762.580 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.592 kb on + strand, within ECD_02642 at 2762.593 kb on - strand, within ECD_02642 at 2762.593 kb on - strand, within ECD_02642 at 2762.593 kb on - strand, within ECD_02642 at 2762.593 kb on - strand, within ECD_02642 at 2762.595 kb on + strand, within ECD_02642 at 2762.595 kb on + strand, within ECD_02642 at 2762.596 kb on - strand, within ECD_02642 at 2762.596 kb on - strand, within ECD_02642 at 2762.596 kb on - strand, within ECD_02642 at 2762.596 kb on - strand, within ECD_02642 at 2762.600 kb on + strand, within ECD_02642 at 2762.600 kb on + strand, within ECD_02642 at 2762.600 kb on + strand, within ECD_02642 at 2762.601 kb on - strand, within ECD_02642 at 2762.601 kb on - strand, within ECD_02642 at 2762.893 kb on + strand, within ECD_02642 at 2762.918 kb on + strand, within ECD_02642 at 2762.918 kb on + strand, within ECD_02642 at 2762.919 kb on - strand, within ECD_02642 at 2763.042 kb on - strand, within ECD_02642 at 2763.060 kb on + strand, within ECD_02642 at 2763.060 kb on + strand, within ECD_02642 at 2763.061 kb on - strand, within ECD_02642 at 2763.063 kb on + strand, within ECD_02642
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,759,944 + ECD_02640 0.77 -0.2 2,759,944 + ECD_02640 0.77 +0.4 2,759,944 + ECD_02640 0.77 -0.1 2,760,005 - ECD_02640 0.81 +0.9 2,760,096 + ECD_02640 0.88 +1.7 2,760,096 + ECD_02640 0.88 -0.8 2,760,096 + ECD_02640 0.88 +0.6 2,760,096 + ECD_02640 0.88 -0.4 2,760,097 - ECD_02640 0.88 +0.6 2,760,097 - ECD_02640 0.88 -0.8 2,760,154 + +2.2 2,760,163 + +0.3 2,760,163 + -0.9 2,760,164 - -1.0 2,760,186 + -0.5 2,760,212 - +0.4 2,760,233 + +0.3 2,760,234 - +0.7 2,760,234 - -1.7 2,760,260 + -0.4 2,760,261 - +0.6 2,760,261 - -0.9 2,760,261 - -1.0 2,760,315 + -1.1 2,760,315 + +2.2 2,760,316 - +1.0 2,760,316 - +0.2 2,760,316 - +0.3 2,760,316 - +0.1 2,760,316 - -0.8 2,760,375 - -0.3 2,760,448 - -0.6 2,760,480 - -0.8 2,760,511 + -0.0 2,760,515 + -0.5 2,760,515 + -0.8 2,760,516 - +0.0 2,760,517 + -0.7 2,760,518 - -0.8 2,760,629 + +2.1 2,760,665 + -0.3 2,760,665 + -0.8 2,760,669 + -1.4 2,760,669 + -0.0 2,760,718 + -0.8 2,760,794 - -1.4 2,760,816 + -0.5 2,760,816 + -1.0 2,760,816 + -0.3 2,760,989 + ECD_02641 0.13 -1.2 2,761,042 + ECD_02641 0.17 -2.9 2,761,042 + ECD_02641 0.17 -0.9 2,761,042 + ECD_02641 0.17 +0.0 2,761,084 + ECD_02641 0.21 -1.0 2,761,084 + ECD_02641 0.21 -2.6 2,761,131 + ECD_02641 0.24 +0.7 2,761,131 + ECD_02641 0.24 +0.3 2,761,146 + ECD_02641 0.25 -3.0 2,761,164 + ECD_02641 0.27 +0.0 2,761,164 + ECD_02641 0.27 -0.1 2,761,164 + ECD_02641 0.27 -2.3 2,761,166 + ECD_02641 0.27 +0.8 2,761,167 - ECD_02641 0.27 +0.5 2,761,184 + ECD_02641 0.28 +0.7 2,761,185 - ECD_02641 0.28 +0.6 2,761,304 + ECD_02641 0.38 -0.0 2,761,316 + ECD_02641 0.39 -0.8 2,761,316 + ECD_02641 0.39 -0.7 2,761,316 + ECD_02641 0.39 +1.0 2,761,317 - ECD_02641 0.39 -0.1 2,761,342 + ECD_02641 0.41 -0.7 2,761,362 + ECD_02641 0.42 +0.0 2,761,362 + ECD_02641 0.42 -1.7 2,761,603 + ECD_02641 0.61 -0.8 2,761,627 + ECD_02641 0.63 +0.3 2,761,779 + ECD_02641 0.74 -0.9 2,761,817 + ECD_02641 0.77 +2.0 2,761,817 + ECD_02641 0.77 +2.3 2,761,818 - ECD_02641 0.77 +0.1 2,761,818 - ECD_02641 0.77 +0.3 2,761,838 + ECD_02641 0.79 +1.5 2,761,838 + ECD_02641 0.79 +0.0 2,761,838 + ECD_02641 0.79 +0.6 2,761,838 + ECD_02641 0.79 +0.2 2,761,838 + ECD_02641 0.79 -0.2 2,761,992 + -0.3 2,761,992 + -0.2 2,762,021 + -0.9 2,762,021 + +0.5 2,762,021 + -1.1 2,762,021 + -0.3 2,762,021 + +1.1 2,762,021 + +0.6 2,762,021 + +0.6 2,762,025 + -2.1 2,762,025 + +2.0 2,762,025 + +0.8 2,762,047 + -1.3 2,762,047 + -0.9 2,762,047 + -0.9 2,762,047 + +0.5 2,762,047 + +0.0 2,762,091 + +0.0 2,762,091 + -0.7 2,762,092 - +0.9 2,762,092 - -1.7 2,762,106 + -0.6 2,762,106 + +0.8 2,762,107 - +2.5 2,762,158 + -0.3 2,762,158 + -2.5 2,762,159 - +0.6 2,762,159 - -1.5 2,762,183 + -0.5 2,762,219 + +0.9 2,762,282 + -0.7 2,762,282 + -0.7 2,762,363 + ECD_02642 0.14 +1.0 2,762,363 + ECD_02642 0.14 +0.1 2,762,363 + ECD_02642 0.14 -0.3 2,762,364 - ECD_02642 0.14 -0.8 2,762,364 - ECD_02642 0.14 -1.3 2,762,367 - ECD_02642 0.15 +0.1 2,762,393 + ECD_02642 0.17 -0.9 2,762,423 + ECD_02642 0.19 -0.4 2,762,439 - ECD_02642 0.20 -0.5 2,762,439 - ECD_02642 0.20 -2.0 2,762,552 + ECD_02642 0.28 -0.9 2,762,580 + ECD_02642 0.30 -1.3 2,762,592 + ECD_02642 0.31 -1.0 2,762,592 + ECD_02642 0.31 -0.8 2,762,592 + ECD_02642 0.31 -3.1 2,762,592 + ECD_02642 0.31 +0.6 2,762,592 + ECD_02642 0.31 -0.6 2,762,592 + ECD_02642 0.31 -1.9 2,762,592 + ECD_02642 0.31 +0.1 2,762,592 + ECD_02642 0.31 -0.2 2,762,592 + ECD_02642 0.31 +1.3 2,762,592 + ECD_02642 0.31 -1.1 2,762,592 + ECD_02642 0.31 +0.4 2,762,592 + ECD_02642 0.31 -0.2 2,762,592 + ECD_02642 0.31 -0.5 2,762,592 + ECD_02642 0.31 -0.3 2,762,593 - ECD_02642 0.31 +0.3 2,762,593 - ECD_02642 0.31 -0.0 2,762,593 - ECD_02642 0.31 -0.5 2,762,593 - ECD_02642 0.31 -1.2 2,762,595 + ECD_02642 0.31 +1.1 2,762,595 + ECD_02642 0.31 -0.3 2,762,596 - ECD_02642 0.31 +0.7 2,762,596 - ECD_02642 0.31 +0.7 2,762,596 - ECD_02642 0.31 +0.3 2,762,596 - ECD_02642 0.31 +0.3 2,762,600 + ECD_02642 0.32 -0.6 2,762,600 + ECD_02642 0.32 +0.3 2,762,600 + ECD_02642 0.32 -0.6 2,762,601 - ECD_02642 0.32 -0.1 2,762,601 - ECD_02642 0.32 -0.3 2,762,893 + ECD_02642 0.53 +1.3 2,762,918 + ECD_02642 0.55 -1.8 2,762,918 + ECD_02642 0.55 -0.6 2,762,919 - ECD_02642 0.55 +2.0 2,763,042 - ECD_02642 0.64 +0.4 2,763,060 + ECD_02642 0.65 -0.3 2,763,060 + ECD_02642 0.65 -0.2 2,763,061 - ECD_02642 0.65 +2.2 2,763,063 + ECD_02642 0.66 -0.9
Or see this region's nucleotide sequence