Strain Fitness in Escherichia coli BL21 around ECD_02641

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02640 and ECD_02641 are separated by 556 nucleotidesECD_02641 and ECD_02642 are separated by 57 nucleotides ECD_02640: ECD_02640 - UPF0717 family protein, at 2,758,898 to 2,760,262 _02640 ECD_02641: ECD_02641 - putative serine transporter, at 2,760,819 to 2,762,108 _02641 ECD_02642: ECD_02642 - L-serine dehydratase 2, at 2,762,166 to 2,763,533 _02642 Position (kb) 2760 2761 2762 2763Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2759.944 kb on + strand, within ECD_02640at 2759.944 kb on + strand, within ECD_02640at 2759.944 kb on + strand, within ECD_02640at 2760.005 kb on - strand, within ECD_02640at 2760.096 kb on + strand, within ECD_02640at 2760.096 kb on + strand, within ECD_02640at 2760.096 kb on + strand, within ECD_02640at 2760.096 kb on + strand, within ECD_02640at 2760.097 kb on - strand, within ECD_02640at 2760.097 kb on - strand, within ECD_02640at 2760.154 kb on + strandat 2760.163 kb on + strandat 2760.163 kb on + strandat 2760.164 kb on - strandat 2760.186 kb on + strandat 2760.212 kb on - strandat 2760.233 kb on + strandat 2760.234 kb on - strandat 2760.234 kb on - strandat 2760.260 kb on + strandat 2760.261 kb on - strandat 2760.261 kb on - strandat 2760.261 kb on - strandat 2760.315 kb on + strandat 2760.315 kb on + strandat 2760.316 kb on - strandat 2760.316 kb on - strandat 2760.316 kb on - strandat 2760.316 kb on - strandat 2760.316 kb on - strandat 2760.375 kb on - strandat 2760.448 kb on - strandat 2760.480 kb on - strandat 2760.511 kb on + strandat 2760.515 kb on + strandat 2760.515 kb on + strandat 2760.516 kb on - strandat 2760.517 kb on + strandat 2760.518 kb on - strandat 2760.629 kb on + strandat 2760.665 kb on + strandat 2760.665 kb on + strandat 2760.669 kb on + strandat 2760.669 kb on + strandat 2760.718 kb on + strandat 2760.794 kb on - strandat 2760.816 kb on + strandat 2760.816 kb on + strandat 2760.816 kb on + strandat 2760.989 kb on + strand, within ECD_02641at 2761.042 kb on + strand, within ECD_02641at 2761.042 kb on + strand, within ECD_02641at 2761.042 kb on + strand, within ECD_02641at 2761.084 kb on + strand, within ECD_02641at 2761.084 kb on + strand, within ECD_02641at 2761.131 kb on + strand, within ECD_02641at 2761.131 kb on + strand, within ECD_02641at 2761.146 kb on + strand, within ECD_02641at 2761.164 kb on + strand, within ECD_02641at 2761.164 kb on + strand, within ECD_02641at 2761.164 kb on + strand, within ECD_02641at 2761.166 kb on + strand, within ECD_02641at 2761.167 kb on - strand, within ECD_02641at 2761.184 kb on + strand, within ECD_02641at 2761.185 kb on - strand, within ECD_02641at 2761.304 kb on + strand, within ECD_02641at 2761.316 kb on + strand, within ECD_02641at 2761.316 kb on + strand, within ECD_02641at 2761.316 kb on + strand, within ECD_02641at 2761.317 kb on - strand, within ECD_02641at 2761.342 kb on + strand, within ECD_02641at 2761.362 kb on + strand, within ECD_02641at 2761.362 kb on + strand, within ECD_02641at 2761.603 kb on + strand, within ECD_02641at 2761.627 kb on + strand, within ECD_02641at 2761.779 kb on + strand, within ECD_02641at 2761.817 kb on + strand, within ECD_02641at 2761.817 kb on + strand, within ECD_02641at 2761.818 kb on - strand, within ECD_02641at 2761.818 kb on - strand, within ECD_02641at 2761.838 kb on + strand, within ECD_02641at 2761.838 kb on + strand, within ECD_02641at 2761.838 kb on + strand, within ECD_02641at 2761.838 kb on + strand, within ECD_02641at 2761.838 kb on + strand, within ECD_02641at 2761.992 kb on + strandat 2761.992 kb on + strandat 2762.021 kb on + strandat 2762.021 kb on + strandat 2762.021 kb on + strandat 2762.021 kb on + strandat 2762.021 kb on + strandat 2762.021 kb on + strandat 2762.021 kb on + strandat 2762.025 kb on + strandat 2762.025 kb on + strandat 2762.025 kb on + strandat 2762.047 kb on + strandat 2762.047 kb on + strandat 2762.047 kb on + strandat 2762.047 kb on + strandat 2762.047 kb on + strandat 2762.091 kb on + strandat 2762.091 kb on + strandat 2762.092 kb on - strandat 2762.092 kb on - strandat 2762.106 kb on + strandat 2762.106 kb on + strandat 2762.107 kb on - strandat 2762.158 kb on + strandat 2762.158 kb on + strandat 2762.159 kb on - strandat 2762.159 kb on - strandat 2762.183 kb on + strandat 2762.219 kb on + strandat 2762.282 kb on + strandat 2762.282 kb on + strandat 2762.363 kb on + strand, within ECD_02642at 2762.363 kb on + strand, within ECD_02642at 2762.363 kb on + strand, within ECD_02642at 2762.364 kb on - strand, within ECD_02642at 2762.364 kb on - strand, within ECD_02642at 2762.367 kb on - strand, within ECD_02642at 2762.393 kb on + strand, within ECD_02642at 2762.423 kb on + strand, within ECD_02642at 2762.439 kb on - strand, within ECD_02642at 2762.439 kb on - strand, within ECD_02642at 2762.552 kb on + strand, within ECD_02642at 2762.580 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.592 kb on + strand, within ECD_02642at 2762.593 kb on - strand, within ECD_02642at 2762.593 kb on - strand, within ECD_02642at 2762.593 kb on - strand, within ECD_02642at 2762.593 kb on - strand, within ECD_02642at 2762.595 kb on + strand, within ECD_02642at 2762.595 kb on + strand, within ECD_02642at 2762.596 kb on - strand, within ECD_02642at 2762.596 kb on - strand, within ECD_02642at 2762.596 kb on - strand, within ECD_02642at 2762.596 kb on - strand, within ECD_02642at 2762.600 kb on + strand, within ECD_02642at 2762.600 kb on + strand, within ECD_02642at 2762.600 kb on + strand, within ECD_02642at 2762.601 kb on - strand, within ECD_02642at 2762.601 kb on - strand, within ECD_02642at 2762.893 kb on + strand, within ECD_02642at 2762.918 kb on + strand, within ECD_02642at 2762.918 kb on + strand, within ECD_02642at 2762.919 kb on - strand, within ECD_02642at 2763.042 kb on - strand, within ECD_02642at 2763.060 kb on + strand, within ECD_02642at 2763.060 kb on + strand, within ECD_02642at 2763.061 kb on - strand, within ECD_02642at 2763.063 kb on + strand, within ECD_02642

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
2,759,944 + ECD_02640 0.77 -0.2
2,759,944 + ECD_02640 0.77 +0.4
2,759,944 + ECD_02640 0.77 -0.1
2,760,005 - ECD_02640 0.81 +0.9
2,760,096 + ECD_02640 0.88 +1.7
2,760,096 + ECD_02640 0.88 -0.8
2,760,096 + ECD_02640 0.88 +0.6
2,760,096 + ECD_02640 0.88 -0.4
2,760,097 - ECD_02640 0.88 +0.6
2,760,097 - ECD_02640 0.88 -0.8
2,760,154 + +2.2
2,760,163 + +0.3
2,760,163 + -0.9
2,760,164 - -1.0
2,760,186 + -0.5
2,760,212 - +0.4
2,760,233 + +0.3
2,760,234 - +0.7
2,760,234 - -1.7
2,760,260 + -0.4
2,760,261 - +0.6
2,760,261 - -0.9
2,760,261 - -1.0
2,760,315 + -1.1
2,760,315 + +2.2
2,760,316 - +1.0
2,760,316 - +0.2
2,760,316 - +0.3
2,760,316 - +0.1
2,760,316 - -0.8
2,760,375 - -0.3
2,760,448 - -0.6
2,760,480 - -0.8
2,760,511 + -0.0
2,760,515 + -0.5
2,760,515 + -0.8
2,760,516 - +0.0
2,760,517 + -0.7
2,760,518 - -0.8
2,760,629 + +2.1
2,760,665 + -0.3
2,760,665 + -0.8
2,760,669 + -1.4
2,760,669 + -0.0
2,760,718 + -0.8
2,760,794 - -1.4
2,760,816 + -0.5
2,760,816 + -1.0
2,760,816 + -0.3
2,760,989 + ECD_02641 0.13 -1.2
2,761,042 + ECD_02641 0.17 -2.9
2,761,042 + ECD_02641 0.17 -0.9
2,761,042 + ECD_02641 0.17 +0.0
2,761,084 + ECD_02641 0.21 -1.0
2,761,084 + ECD_02641 0.21 -2.6
2,761,131 + ECD_02641 0.24 +0.7
2,761,131 + ECD_02641 0.24 +0.3
2,761,146 + ECD_02641 0.25 -3.0
2,761,164 + ECD_02641 0.27 +0.0
2,761,164 + ECD_02641 0.27 -0.1
2,761,164 + ECD_02641 0.27 -2.3
2,761,166 + ECD_02641 0.27 +0.8
2,761,167 - ECD_02641 0.27 +0.5
2,761,184 + ECD_02641 0.28 +0.7
2,761,185 - ECD_02641 0.28 +0.6
2,761,304 + ECD_02641 0.38 -0.0
2,761,316 + ECD_02641 0.39 -0.8
2,761,316 + ECD_02641 0.39 -0.7
2,761,316 + ECD_02641 0.39 +1.0
2,761,317 - ECD_02641 0.39 -0.1
2,761,342 + ECD_02641 0.41 -0.7
2,761,362 + ECD_02641 0.42 +0.0
2,761,362 + ECD_02641 0.42 -1.7
2,761,603 + ECD_02641 0.61 -0.8
2,761,627 + ECD_02641 0.63 +0.3
2,761,779 + ECD_02641 0.74 -0.9
2,761,817 + ECD_02641 0.77 +2.0
2,761,817 + ECD_02641 0.77 +2.3
2,761,818 - ECD_02641 0.77 +0.1
2,761,818 - ECD_02641 0.77 +0.3
2,761,838 + ECD_02641 0.79 +1.5
2,761,838 + ECD_02641 0.79 +0.0
2,761,838 + ECD_02641 0.79 +0.6
2,761,838 + ECD_02641 0.79 +0.2
2,761,838 + ECD_02641 0.79 -0.2
2,761,992 + -0.3
2,761,992 + -0.2
2,762,021 + -0.9
2,762,021 + +0.5
2,762,021 + -1.1
2,762,021 + -0.3
2,762,021 + +1.1
2,762,021 + +0.6
2,762,021 + +0.6
2,762,025 + -2.1
2,762,025 + +2.0
2,762,025 + +0.8
2,762,047 + -1.3
2,762,047 + -0.9
2,762,047 + -0.9
2,762,047 + +0.5
2,762,047 + +0.0
2,762,091 + +0.0
2,762,091 + -0.7
2,762,092 - +0.9
2,762,092 - -1.7
2,762,106 + -0.6
2,762,106 + +0.8
2,762,107 - +2.5
2,762,158 + -0.3
2,762,158 + -2.5
2,762,159 - +0.6
2,762,159 - -1.5
2,762,183 + -0.5
2,762,219 + +0.9
2,762,282 + -0.7
2,762,282 + -0.7
2,762,363 + ECD_02642 0.14 +1.0
2,762,363 + ECD_02642 0.14 +0.1
2,762,363 + ECD_02642 0.14 -0.3
2,762,364 - ECD_02642 0.14 -0.8
2,762,364 - ECD_02642 0.14 -1.3
2,762,367 - ECD_02642 0.15 +0.1
2,762,393 + ECD_02642 0.17 -0.9
2,762,423 + ECD_02642 0.19 -0.4
2,762,439 - ECD_02642 0.20 -0.5
2,762,439 - ECD_02642 0.20 -2.0
2,762,552 + ECD_02642 0.28 -0.9
2,762,580 + ECD_02642 0.30 -1.3
2,762,592 + ECD_02642 0.31 -1.0
2,762,592 + ECD_02642 0.31 -0.8
2,762,592 + ECD_02642 0.31 -3.1
2,762,592 + ECD_02642 0.31 +0.6
2,762,592 + ECD_02642 0.31 -0.6
2,762,592 + ECD_02642 0.31 -1.9
2,762,592 + ECD_02642 0.31 +0.1
2,762,592 + ECD_02642 0.31 -0.2
2,762,592 + ECD_02642 0.31 +1.3
2,762,592 + ECD_02642 0.31 -1.1
2,762,592 + ECD_02642 0.31 +0.4
2,762,592 + ECD_02642 0.31 -0.2
2,762,592 + ECD_02642 0.31 -0.5
2,762,592 + ECD_02642 0.31 -0.3
2,762,593 - ECD_02642 0.31 +0.3
2,762,593 - ECD_02642 0.31 -0.0
2,762,593 - ECD_02642 0.31 -0.5
2,762,593 - ECD_02642 0.31 -1.2
2,762,595 + ECD_02642 0.31 +1.1
2,762,595 + ECD_02642 0.31 -0.3
2,762,596 - ECD_02642 0.31 +0.7
2,762,596 - ECD_02642 0.31 +0.7
2,762,596 - ECD_02642 0.31 +0.3
2,762,596 - ECD_02642 0.31 +0.3
2,762,600 + ECD_02642 0.32 -0.6
2,762,600 + ECD_02642 0.32 +0.3
2,762,600 + ECD_02642 0.32 -0.6
2,762,601 - ECD_02642 0.32 -0.1
2,762,601 - ECD_02642 0.32 -0.3
2,762,893 + ECD_02642 0.53 +1.3
2,762,918 + ECD_02642 0.55 -1.8
2,762,918 + ECD_02642 0.55 -0.6
2,762,919 - ECD_02642 0.55 +2.0
2,763,042 - ECD_02642 0.64 +0.4
2,763,060 + ECD_02642 0.65 -0.3
2,763,060 + ECD_02642 0.65 -0.2
2,763,061 - ECD_02642 0.65 +2.2
2,763,063 + ECD_02642 0.66 -0.9

Or see this region's nucleotide sequence