Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02407 and ECD_02408 are separated by 26 nucleotides ECD_02408 and ECD_02409 are separated by 284 nucleotides
ECD_02407: ECD_02407 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, at 2,505,166 to 2,506,284
_02407
ECD_02408: ECD_02408 - MreB assembly cytoskeletal protein, at 2,506,311 to 2,507,324
_02408
ECD_02409: ECD_02409 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent, at 2,507,609 to 2,508,763
_02409
Position (kb)
2506
2507
2508 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2506.362 kb on - strand at 2506.362 kb on - strand at 2506.362 kb on - strand at 2506.547 kb on + strand, within ECD_02408 at 2506.738 kb on - strand, within ECD_02408 at 2506.811 kb on + strand, within ECD_02408 at 2506.811 kb on + strand, within ECD_02408 at 2506.812 kb on - strand, within ECD_02408 at 2506.812 kb on - strand, within ECD_02408 at 2506.823 kb on + strand, within ECD_02408 at 2506.824 kb on - strand, within ECD_02408 at 2506.828 kb on - strand, within ECD_02408 at 2506.854 kb on - strand, within ECD_02408 at 2506.857 kb on - strand, within ECD_02408 at 2506.889 kb on + strand, within ECD_02408 at 2506.889 kb on + strand, within ECD_02408 at 2507.418 kb on - strand at 2507.418 kb on - strand at 2507.422 kb on + strand at 2507.423 kb on - strand at 2507.423 kb on - strand at 2507.423 kb on - strand at 2507.424 kb on + strand at 2507.424 kb on + strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.425 kb on - strand at 2507.470 kb on - strand at 2507.475 kb on - strand at 2507.488 kb on + strand at 2507.488 kb on + strand at 2507.489 kb on - strand at 2507.492 kb on + strand at 2507.493 kb on - strand at 2507.524 kb on - strand at 2507.526 kb on + strand at 2507.527 kb on - strand at 2507.548 kb on + strand at 2507.551 kb on + strand at 2507.551 kb on + strand at 2507.552 kb on - strand at 2507.581 kb on - strand at 2507.608 kb on - strand at 2507.651 kb on - strand at 2507.740 kb on + strand, within ECD_02409 at 2507.740 kb on + strand, within ECD_02409 at 2507.741 kb on - strand, within ECD_02409 at 2507.755 kb on - strand, within ECD_02409 at 2507.851 kb on + strand, within ECD_02409 at 2507.851 kb on + strand, within ECD_02409 at 2507.860 kb on + strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2508.010 kb on - strand, within ECD_02409 at 2508.010 kb on - strand, within ECD_02409 at 2508.092 kb on - strand, within ECD_02409 at 2508.120 kb on - strand, within ECD_02409 at 2508.152 kb on - strand, within ECD_02409 at 2508.246 kb on - strand, within ECD_02409
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,506,362 - +1.4 2,506,362 - +0.4 2,506,362 - -0.0 2,506,547 + ECD_02408 0.23 +1.1 2,506,738 - ECD_02408 0.42 -0.4 2,506,811 + ECD_02408 0.49 +1.6 2,506,811 + ECD_02408 0.49 -0.5 2,506,812 - ECD_02408 0.49 +0.2 2,506,812 - ECD_02408 0.49 -0.3 2,506,823 + ECD_02408 0.50 +1.9 2,506,824 - ECD_02408 0.51 +0.5 2,506,828 - ECD_02408 0.51 -0.1 2,506,854 - ECD_02408 0.54 +0.5 2,506,857 - ECD_02408 0.54 -0.0 2,506,889 + ECD_02408 0.57 +1.1 2,506,889 + ECD_02408 0.57 +0.5 2,507,418 - -0.4 2,507,418 - -0.2 2,507,422 + +1.5 2,507,423 - -0.2 2,507,423 - -0.3 2,507,423 - +2.0 2,507,424 + -0.7 2,507,424 + +0.3 2,507,425 - -0.5 2,507,425 - +0.3 2,507,425 - -0.3 2,507,425 - -0.1 2,507,425 - -0.1 2,507,425 - -0.0 2,507,470 - +0.6 2,507,475 - +4.2 2,507,488 + +0.4 2,507,488 + +0.5 2,507,489 - +0.1 2,507,492 + -1.0 2,507,493 - +0.3 2,507,524 - -0.5 2,507,526 + +0.2 2,507,527 - -0.6 2,507,548 + -0.1 2,507,551 + +0.1 2,507,551 + +0.5 2,507,552 - +0.4 2,507,581 - -0.1 2,507,608 - -0.6 2,507,651 - +0.6 2,507,740 + ECD_02409 0.11 +0.7 2,507,740 + ECD_02409 0.11 +0.5 2,507,741 - ECD_02409 0.11 -0.7 2,507,755 - ECD_02409 0.13 -0.7 2,507,851 + ECD_02409 0.21 +0.3 2,507,851 + ECD_02409 0.21 -1.3 2,507,860 + ECD_02409 0.22 -1.3 2,507,929 - ECD_02409 0.28 +0.7 2,507,929 - ECD_02409 0.28 -2.9 2,507,929 - ECD_02409 0.28 -0.9 2,508,010 - ECD_02409 0.35 +0.2 2,508,010 - ECD_02409 0.35 +0.7 2,508,092 - ECD_02409 0.42 +1.5 2,508,120 - ECD_02409 0.44 -1.4 2,508,152 - ECD_02409 0.47 -1.8 2,508,246 - ECD_02409 0.55 -1.3
Or see this region's nucleotide sequence