Strain Fitness in Escherichia coli BL21 around ECD_02272

Experiment: Laval1259

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02270 and ECD_02271 overlap by 82 nucleotidesECD_02271 and ECD_02272 are separated by 539 nucleotidesECD_02272 and ECD_02273 are separated by 293 nucleotides ECD_02270: ECD_02270 - IS1 protein InsB, at 2,351,118 to 2,351,621 _02270 ECD_02271: ECD_02271 - IS1 protein InsA, at 2,351,540 to 2,351,815 _02271 ECD_02272: ECD_02272 - ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component, at 2,352,355 to 2,353,110 _02272 ECD_02273: ECD_02273 - putative inner membrane protein, at 2,353,404 to 2,354,336 _02273 Position (kb) 2352 2353 2354Strain fitness (log2 ratio) -1 0 1 2at 2351.840 kb on + strandat 2352.672 kb on - strand, within ECD_02272at 2352.706 kb on - strand, within ECD_02272at 2352.769 kb on - strand, within ECD_02272at 2352.852 kb on - strand, within ECD_02272at 2352.856 kb on - strand, within ECD_02272at 2352.856 kb on - strand, within ECD_02272at 2352.907 kb on - strand, within ECD_02272at 2352.926 kb on + strand, within ECD_02272at 2352.927 kb on - strand, within ECD_02272at 2352.961 kb on - strand, within ECD_02272at 2352.970 kb on + strand, within ECD_02272at 2352.993 kb on - strand, within ECD_02272at 2352.993 kb on - strand, within ECD_02272at 2353.137 kb on + strandat 2353.138 kb on - strandat 2353.183 kb on + strandat 2353.200 kb on - strandat 2353.277 kb on - strandat 2353.333 kb on + strandat 2353.376 kb on + strandat 2353.377 kb on - strandat 2353.378 kb on + strandat 2353.379 kb on - strandat 2353.486 kb on + strandat 2353.624 kb on + strand, within ECD_02273at 2353.698 kb on - strand, within ECD_02273at 2353.811 kb on + strand, within ECD_02273at 2353.812 kb on - strand, within ECD_02273at 2353.813 kb on + strand, within ECD_02273at 2353.814 kb on - strand, within ECD_02273at 2353.859 kb on + strand, within ECD_02273at 2353.881 kb on + strand, within ECD_02273at 2353.883 kb on + strand, within ECD_02273at 2353.883 kb on + strand, within ECD_02273at 2353.884 kb on - strand, within ECD_02273at 2353.884 kb on - strand, within ECD_02273at 2354.003 kb on + strand, within ECD_02273at 2354.004 kb on - strand, within ECD_02273at 2354.004 kb on - strand, within ECD_02273at 2354.051 kb on + strand, within ECD_02273

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
remove
2,351,840 + -0.0
2,352,672 - ECD_02272 0.42 +0.8
2,352,706 - ECD_02272 0.46 -0.2
2,352,769 - ECD_02272 0.55 +0.9
2,352,852 - ECD_02272 0.66 +0.8
2,352,856 - ECD_02272 0.66 +1.3
2,352,856 - ECD_02272 0.66 +0.5
2,352,907 - ECD_02272 0.73 +1.0
2,352,926 + ECD_02272 0.76 +0.4
2,352,927 - ECD_02272 0.76 +0.3
2,352,961 - ECD_02272 0.80 +0.4
2,352,970 + ECD_02272 0.81 +1.6
2,352,993 - ECD_02272 0.84 +1.1
2,352,993 - ECD_02272 0.84 -0.1
2,353,137 + +2.0
2,353,138 - +0.4
2,353,183 + +0.3
2,353,200 - +0.4
2,353,277 - +0.7
2,353,333 + -0.2
2,353,376 + +0.0
2,353,377 - -0.4
2,353,378 + +1.4
2,353,379 - +0.4
2,353,486 + +0.8
2,353,624 + ECD_02273 0.24 +0.7
2,353,698 - ECD_02273 0.32 -0.2
2,353,811 + ECD_02273 0.44 -1.0
2,353,812 - ECD_02273 0.44 +0.4
2,353,813 + ECD_02273 0.44 +0.6
2,353,814 - ECD_02273 0.44 +0.4
2,353,859 + ECD_02273 0.49 +0.5
2,353,881 + ECD_02273 0.51 -0.4
2,353,883 + ECD_02273 0.51 +1.6
2,353,883 + ECD_02273 0.51 +1.5
2,353,884 - ECD_02273 0.51 +0.6
2,353,884 - ECD_02273 0.51 +0.5
2,354,003 + ECD_02273 0.64 -0.7
2,354,004 - ECD_02273 0.64 +0.4
2,354,004 - ECD_02273 0.64 -1.0
2,354,051 + ECD_02273 0.69 -0.5

Or see this region's nucleotide sequence