Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02270 and ECD_02271 overlap by 82 nucleotides ECD_02271 and ECD_02272 are separated by 539 nucleotides ECD_02272 and ECD_02273 are separated by 293 nucleotides
ECD_02270: ECD_02270 - IS1 protein InsB, at 2,351,118 to 2,351,621
_02270
ECD_02271: ECD_02271 - IS1 protein InsA, at 2,351,540 to 2,351,815
_02271
ECD_02272: ECD_02272 - ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component, at 2,352,355 to 2,353,110
_02272
ECD_02273: ECD_02273 - putative inner membrane protein, at 2,353,404 to 2,354,336
_02273
Position (kb)
2352
2353
2354 Strain fitness (log2 ratio)
-1
0
1
2 at 2351.840 kb on + strand at 2352.672 kb on - strand, within ECD_02272 at 2352.706 kb on - strand, within ECD_02272 at 2352.769 kb on - strand, within ECD_02272 at 2352.852 kb on - strand, within ECD_02272 at 2352.856 kb on - strand, within ECD_02272 at 2352.856 kb on - strand, within ECD_02272 at 2352.907 kb on - strand, within ECD_02272 at 2352.926 kb on + strand, within ECD_02272 at 2352.927 kb on - strand, within ECD_02272 at 2352.961 kb on - strand, within ECD_02272 at 2352.970 kb on + strand, within ECD_02272 at 2352.993 kb on - strand, within ECD_02272 at 2352.993 kb on - strand, within ECD_02272 at 2353.137 kb on + strand at 2353.138 kb on - strand at 2353.183 kb on + strand at 2353.200 kb on - strand at 2353.277 kb on - strand at 2353.333 kb on + strand at 2353.376 kb on + strand at 2353.377 kb on - strand at 2353.378 kb on + strand at 2353.379 kb on - strand at 2353.486 kb on + strand at 2353.624 kb on + strand, within ECD_02273 at 2353.698 kb on - strand, within ECD_02273 at 2353.811 kb on + strand, within ECD_02273 at 2353.812 kb on - strand, within ECD_02273 at 2353.813 kb on + strand, within ECD_02273 at 2353.814 kb on - strand, within ECD_02273 at 2353.859 kb on + strand, within ECD_02273 at 2353.881 kb on + strand, within ECD_02273 at 2353.883 kb on + strand, within ECD_02273 at 2353.883 kb on + strand, within ECD_02273 at 2353.884 kb on - strand, within ECD_02273 at 2353.884 kb on - strand, within ECD_02273 at 2354.003 kb on + strand, within ECD_02273 at 2354.004 kb on - strand, within ECD_02273 at 2354.004 kb on - strand, within ECD_02273 at 2354.051 kb on + strand, within ECD_02273
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,351,840 + -0.0 2,352,672 - ECD_02272 0.42 +0.8 2,352,706 - ECD_02272 0.46 -0.2 2,352,769 - ECD_02272 0.55 +0.9 2,352,852 - ECD_02272 0.66 +0.8 2,352,856 - ECD_02272 0.66 +1.3 2,352,856 - ECD_02272 0.66 +0.5 2,352,907 - ECD_02272 0.73 +1.0 2,352,926 + ECD_02272 0.76 +0.4 2,352,927 - ECD_02272 0.76 +0.3 2,352,961 - ECD_02272 0.80 +0.4 2,352,970 + ECD_02272 0.81 +1.6 2,352,993 - ECD_02272 0.84 +1.1 2,352,993 - ECD_02272 0.84 -0.1 2,353,137 + +2.0 2,353,138 - +0.4 2,353,183 + +0.3 2,353,200 - +0.4 2,353,277 - +0.7 2,353,333 + -0.2 2,353,376 + +0.0 2,353,377 - -0.4 2,353,378 + +1.4 2,353,379 - +0.4 2,353,486 + +0.8 2,353,624 + ECD_02273 0.24 +0.7 2,353,698 - ECD_02273 0.32 -0.2 2,353,811 + ECD_02273 0.44 -1.0 2,353,812 - ECD_02273 0.44 +0.4 2,353,813 + ECD_02273 0.44 +0.6 2,353,814 - ECD_02273 0.44 +0.4 2,353,859 + ECD_02273 0.49 +0.5 2,353,881 + ECD_02273 0.51 -0.4 2,353,883 + ECD_02273 0.51 +1.6 2,353,883 + ECD_02273 0.51 +1.5 2,353,884 - ECD_02273 0.51 +0.6 2,353,884 - ECD_02273 0.51 +0.5 2,354,003 + ECD_02273 0.64 -0.7 2,354,004 - ECD_02273 0.64 +0.4 2,354,004 - ECD_02273 0.64 -1.0 2,354,051 + ECD_02273 0.69 -0.5
Or see this region's nucleotide sequence