Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02266 and ECD_02267 are separated by 180 nucleotides ECD_02267 and ECD_02268 are separated by 371 nucleotides
ECD_02266: ECD_02266 - beta-ketoacyl-CoA thiolase, anaerobic, subunit, at 2,346,484 to 2,347,794
_02266
ECD_02267: ECD_02267 - UPF0381 family protein, at 2,347,975 to 2,348,259
_02267
ECD_02268: ECD_02268 - long-chain fatty acid outer membrane transporter, at 2,348,631 to 2,349,971
_02268
Position (kb)
2348
2349
2350 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2347.958 kb on + strand at 2348.218 kb on - strand, within ECD_02267 at 2348.311 kb on - strand at 2348.468 kb on + strand at 2348.544 kb on + strand at 2348.544 kb on + strand at 2348.551 kb on + strand at 2348.591 kb on - strand at 2348.596 kb on - strand at 2348.651 kb on + strand at 2348.684 kb on + strand at 2348.754 kb on + strand at 2348.820 kb on - strand, within ECD_02268 at 2348.856 kb on + strand, within ECD_02268 at 2348.857 kb on - strand, within ECD_02268 at 2348.858 kb on + strand, within ECD_02268 at 2348.859 kb on - strand, within ECD_02268 at 2348.872 kb on + strand, within ECD_02268 at 2348.873 kb on - strand, within ECD_02268 at 2348.996 kb on + strand, within ECD_02268 at 2348.996 kb on + strand, within ECD_02268 at 2348.999 kb on + strand, within ECD_02268 at 2349.009 kb on + strand, within ECD_02268 at 2349.009 kb on + strand, within ECD_02268 at 2349.009 kb on + strand, within ECD_02268 at 2349.010 kb on - strand, within ECD_02268 at 2349.010 kb on - strand, within ECD_02268 at 2349.020 kb on + strand, within ECD_02268 at 2349.036 kb on - strand, within ECD_02268 at 2349.036 kb on - strand, within ECD_02268 at 2349.039 kb on + strand, within ECD_02268 at 2349.039 kb on + strand, within ECD_02268 at 2349.040 kb on - strand, within ECD_02268 at 2349.040 kb on - strand, within ECD_02268 at 2349.094 kb on + strand, within ECD_02268 at 2349.113 kb on - strand, within ECD_02268 at 2349.216 kb on - strand, within ECD_02268 at 2349.349 kb on - strand, within ECD_02268 at 2349.420 kb on + strand, within ECD_02268 at 2349.453 kb on + strand, within ECD_02268 at 2349.453 kb on + strand, within ECD_02268 at 2349.589 kb on - strand, within ECD_02268 at 2349.703 kb on - strand, within ECD_02268 at 2349.705 kb on + strand, within ECD_02268 at 2349.836 kb on + strand, within ECD_02268 at 2349.837 kb on - strand, within ECD_02268 at 2349.837 kb on - strand, within ECD_02268 at 2349.870 kb on + strand at 2349.872 kb on + strand at 2349.872 kb on + strand at 2350.056 kb on - strand at 2350.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,347,958 + +1.5 2,348,218 - ECD_02267 0.85 -0.8 2,348,311 - +1.1 2,348,468 + -0.5 2,348,544 + -1.4 2,348,544 + -0.6 2,348,551 + -0.3 2,348,591 - -2.6 2,348,596 - -0.0 2,348,651 + -0.4 2,348,684 + +0.1 2,348,754 + -0.5 2,348,820 - ECD_02268 0.14 -1.1 2,348,856 + ECD_02268 0.17 -0.6 2,348,857 - ECD_02268 0.17 +0.0 2,348,858 + ECD_02268 0.17 -0.8 2,348,859 - ECD_02268 0.17 +0.2 2,348,872 + ECD_02268 0.18 -0.5 2,348,873 - ECD_02268 0.18 +1.1 2,348,996 + ECD_02268 0.27 -0.8 2,348,996 + ECD_02268 0.27 -1.9 2,348,999 + ECD_02268 0.27 -0.2 2,349,009 + ECD_02268 0.28 -0.8 2,349,009 + ECD_02268 0.28 -2.6 2,349,009 + ECD_02268 0.28 -0.8 2,349,010 - ECD_02268 0.28 -2.0 2,349,010 - ECD_02268 0.28 -0.9 2,349,020 + ECD_02268 0.29 -0.6 2,349,036 - ECD_02268 0.30 +0.6 2,349,036 - ECD_02268 0.30 +0.5 2,349,039 + ECD_02268 0.30 -1.3 2,349,039 + ECD_02268 0.30 -1.5 2,349,040 - ECD_02268 0.30 -0.3 2,349,040 - ECD_02268 0.30 -0.3 2,349,094 + ECD_02268 0.35 -2.1 2,349,113 - ECD_02268 0.36 +0.5 2,349,216 - ECD_02268 0.44 -0.2 2,349,349 - ECD_02268 0.54 -0.8 2,349,420 + ECD_02268 0.59 -0.5 2,349,453 + ECD_02268 0.61 -0.4 2,349,453 + ECD_02268 0.61 -0.4 2,349,589 - ECD_02268 0.71 -0.1 2,349,703 - ECD_02268 0.80 +0.4 2,349,705 + ECD_02268 0.80 -2.0 2,349,836 + ECD_02268 0.90 -0.6 2,349,837 - ECD_02268 0.90 -2.8 2,349,837 - ECD_02268 0.90 +0.5 2,349,870 + -0.2 2,349,872 + +0.1 2,349,872 + -0.6 2,350,056 - -1.1 2,350,927 + +2.0
Or see this region's nucleotide sequence