Strain Fitness in Escherichia coli BL21 around ECD_02268

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02266 and ECD_02267 are separated by 180 nucleotidesECD_02267 and ECD_02268 are separated by 371 nucleotides ECD_02266: ECD_02266 - beta-ketoacyl-CoA thiolase, anaerobic, subunit, at 2,346,484 to 2,347,794 _02266 ECD_02267: ECD_02267 - UPF0381 family protein, at 2,347,975 to 2,348,259 _02267 ECD_02268: ECD_02268 - long-chain fatty acid outer membrane transporter, at 2,348,631 to 2,349,971 _02268 Position (kb) 2348 2349 2350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2347.958 kb on + strandat 2348.218 kb on - strand, within ECD_02267at 2348.311 kb on - strandat 2348.468 kb on + strandat 2348.544 kb on + strandat 2348.544 kb on + strandat 2348.551 kb on + strandat 2348.591 kb on - strandat 2348.596 kb on - strandat 2348.651 kb on + strandat 2348.684 kb on + strandat 2348.754 kb on + strandat 2348.820 kb on - strand, within ECD_02268at 2348.856 kb on + strand, within ECD_02268at 2348.857 kb on - strand, within ECD_02268at 2348.858 kb on + strand, within ECD_02268at 2348.859 kb on - strand, within ECD_02268at 2348.872 kb on + strand, within ECD_02268at 2348.873 kb on - strand, within ECD_02268at 2348.996 kb on + strand, within ECD_02268at 2348.996 kb on + strand, within ECD_02268at 2348.999 kb on + strand, within ECD_02268at 2349.009 kb on + strand, within ECD_02268at 2349.009 kb on + strand, within ECD_02268at 2349.009 kb on + strand, within ECD_02268at 2349.010 kb on - strand, within ECD_02268at 2349.010 kb on - strand, within ECD_02268at 2349.020 kb on + strand, within ECD_02268at 2349.036 kb on - strand, within ECD_02268at 2349.036 kb on - strand, within ECD_02268at 2349.039 kb on + strand, within ECD_02268at 2349.039 kb on + strand, within ECD_02268at 2349.040 kb on - strand, within ECD_02268at 2349.040 kb on - strand, within ECD_02268at 2349.094 kb on + strand, within ECD_02268at 2349.113 kb on - strand, within ECD_02268at 2349.216 kb on - strand, within ECD_02268at 2349.349 kb on - strand, within ECD_02268at 2349.420 kb on + strand, within ECD_02268at 2349.453 kb on + strand, within ECD_02268at 2349.453 kb on + strand, within ECD_02268at 2349.589 kb on - strand, within ECD_02268at 2349.703 kb on - strand, within ECD_02268at 2349.705 kb on + strand, within ECD_02268at 2349.836 kb on + strand, within ECD_02268at 2349.837 kb on - strand, within ECD_02268at 2349.837 kb on - strand, within ECD_02268at 2349.870 kb on + strandat 2349.872 kb on + strandat 2349.872 kb on + strandat 2350.056 kb on - strandat 2350.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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2,347,958 + +1.5
2,348,218 - ECD_02267 0.85 -0.8
2,348,311 - +1.1
2,348,468 + -0.5
2,348,544 + -1.4
2,348,544 + -0.6
2,348,551 + -0.3
2,348,591 - -2.6
2,348,596 - -0.0
2,348,651 + -0.4
2,348,684 + +0.1
2,348,754 + -0.5
2,348,820 - ECD_02268 0.14 -1.1
2,348,856 + ECD_02268 0.17 -0.6
2,348,857 - ECD_02268 0.17 +0.0
2,348,858 + ECD_02268 0.17 -0.8
2,348,859 - ECD_02268 0.17 +0.2
2,348,872 + ECD_02268 0.18 -0.5
2,348,873 - ECD_02268 0.18 +1.1
2,348,996 + ECD_02268 0.27 -0.8
2,348,996 + ECD_02268 0.27 -1.9
2,348,999 + ECD_02268 0.27 -0.2
2,349,009 + ECD_02268 0.28 -0.8
2,349,009 + ECD_02268 0.28 -2.6
2,349,009 + ECD_02268 0.28 -0.8
2,349,010 - ECD_02268 0.28 -2.0
2,349,010 - ECD_02268 0.28 -0.9
2,349,020 + ECD_02268 0.29 -0.6
2,349,036 - ECD_02268 0.30 +0.6
2,349,036 - ECD_02268 0.30 +0.5
2,349,039 + ECD_02268 0.30 -1.3
2,349,039 + ECD_02268 0.30 -1.5
2,349,040 - ECD_02268 0.30 -0.3
2,349,040 - ECD_02268 0.30 -0.3
2,349,094 + ECD_02268 0.35 -2.1
2,349,113 - ECD_02268 0.36 +0.5
2,349,216 - ECD_02268 0.44 -0.2
2,349,349 - ECD_02268 0.54 -0.8
2,349,420 + ECD_02268 0.59 -0.5
2,349,453 + ECD_02268 0.61 -0.4
2,349,453 + ECD_02268 0.61 -0.4
2,349,589 - ECD_02268 0.71 -0.1
2,349,703 - ECD_02268 0.80 +0.4
2,349,705 + ECD_02268 0.80 -2.0
2,349,836 + ECD_02268 0.90 -0.6
2,349,837 - ECD_02268 0.90 -2.8
2,349,837 - ECD_02268 0.90 +0.5
2,349,870 + -0.2
2,349,872 + +0.1
2,349,872 + -0.6
2,350,056 - -1.1
2,350,927 + +2.0

Or see this region's nucleotide sequence