Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02138 and ECD_02139 are separated by 75 nucleotides ECD_02139 and ECD_02140 overlap by 1 nucleotides ECD_02140 and ECD_02141 are separated by 73 nucleotides
ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380
_02138
ECD_02139: ECD_02139 - oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, at 2,202,456 to 2,203,106
_02139
ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170
_02140
ECD_02141: ECD_02141 - putative thiamine-synthetic flavin transferase lipoprotein, at 2,204,244 to 2,205,299
_02141
Position (kb)
2203
2204
2205 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2202.208 kb on - strand, within ECD_02138 at 2202.208 kb on - strand, within ECD_02138 at 2202.367 kb on - strand at 2202.657 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.996 kb on - strand, within ECD_02139 at 2203.214 kb on + strand, within ECD_02140 at 2203.215 kb on - strand, within ECD_02140 at 2203.215 kb on - strand, within ECD_02140 at 2203.674 kb on + strand, within ECD_02140 at 2203.823 kb on + strand, within ECD_02140 at 2204.150 kb on + strand at 2204.151 kb on - strand at 2204.151 kb on - strand at 2204.273 kb on + strand at 2204.297 kb on + strand at 2204.326 kb on + strand at 2204.519 kb on - strand, within ECD_02141 at 2204.523 kb on - strand, within ECD_02141 at 2204.643 kb on - strand, within ECD_02141 at 2204.762 kb on - strand, within ECD_02141 at 2204.763 kb on + strand, within ECD_02141 at 2204.789 kb on - strand, within ECD_02141 at 2204.934 kb on - strand, within ECD_02141 at 2204.934 kb on - strand, within ECD_02141
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,202,208 - ECD_02138 0.89 +0.7 2,202,208 - ECD_02138 0.89 +1.6 2,202,367 - +1.1 2,202,657 + ECD_02139 0.31 +0.7 2,202,941 + ECD_02139 0.75 -0.7 2,202,941 + ECD_02139 0.75 +0.3 2,202,941 + ECD_02139 0.75 -0.2 2,202,941 + ECD_02139 0.75 +0.1 2,202,942 - ECD_02139 0.75 +0.5 2,202,942 - ECD_02139 0.75 -0.1 2,202,942 - ECD_02139 0.75 +0.1 2,202,942 - ECD_02139 0.75 +0.1 2,202,942 - ECD_02139 0.75 -0.3 2,202,942 - ECD_02139 0.75 +0.8 2,202,942 - ECD_02139 0.75 -0.5 2,202,942 - ECD_02139 0.75 -0.2 2,202,942 - ECD_02139 0.75 -0.0 2,202,942 - ECD_02139 0.75 -0.6 2,202,942 - ECD_02139 0.75 +3.3 2,202,942 - ECD_02139 0.75 -0.4 2,202,996 - ECD_02139 0.83 -1.0 2,203,214 + ECD_02140 0.10 +0.3 2,203,215 - ECD_02140 0.10 +0.0 2,203,215 - ECD_02140 0.10 +0.9 2,203,674 + ECD_02140 0.53 +0.5 2,203,823 + ECD_02140 0.67 +0.8 2,204,150 + +1.1 2,204,151 - +0.5 2,204,151 - -0.1 2,204,273 + -0.7 2,204,297 + +1.3 2,204,326 + +1.3 2,204,519 - ECD_02141 0.26 +1.3 2,204,523 - ECD_02141 0.26 +0.6 2,204,643 - ECD_02141 0.38 +0.1 2,204,762 - ECD_02141 0.49 +1.1 2,204,763 + ECD_02141 0.49 +1.4 2,204,789 - ECD_02141 0.52 +0.9 2,204,934 - ECD_02141 0.65 +0.4 2,204,934 - ECD_02141 0.65 +0.3
Or see this region's nucleotide sequence