Strain Fitness in Escherichia coli BL21 around ECD_01981

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01980 and ECD_01981 are separated by 0 nucleotidesECD_01981 and ECD_01982 are separated by 0 nucleotides ECD_01980: ECD_01980 - multidrug efflux system, subunit B, at 2,054,184 to 2,057,306 _01980 ECD_01981: ECD_01981 - multidrug efflux system, subunit C, at 2,057,307 to 2,060,384 _01981 ECD_01982: ECD_01982 - putative citrate/iron-citrate/zinc-citrate efflux transporter, at 2,060,385 to 2,061,800 _01982 Position (kb) 2057 2058 2059 2060 2061Strain fitness (log2 ratio) -2 -1 0 1 2at 2056.338 kb on + strand, within ECD_01980at 2056.443 kb on + strand, within ECD_01980at 2056.443 kb on + strand, within ECD_01980at 2056.815 kb on + strand, within ECD_01980at 2056.816 kb on - strand, within ECD_01980at 2057.055 kb on + strandat 2057.056 kb on - strandat 2057.238 kb on + strandat 2057.304 kb on + strandat 2057.396 kb on + strandat 2057.751 kb on + strand, within ECD_01981at 2057.752 kb on - strand, within ECD_01981at 2058.010 kb on + strand, within ECD_01981at 2058.182 kb on + strand, within ECD_01981at 2058.439 kb on - strand, within ECD_01981at 2058.724 kb on + strand, within ECD_01981at 2058.748 kb on + strand, within ECD_01981at 2058.937 kb on - strand, within ECD_01981at 2059.543 kb on - strand, within ECD_01981at 2059.645 kb on - strand, within ECD_01981at 2059.896 kb on + strand, within ECD_01981at 2059.896 kb on + strand, within ECD_01981at 2059.926 kb on + strand, within ECD_01981at 2059.927 kb on - strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.930 kb on + strand, within ECD_01981at 2059.931 kb on - strand, within ECD_01981at 2060.030 kb on - strand, within ECD_01981at 2060.042 kb on - strand, within ECD_01981at 2060.073 kb on - strand, within ECD_01981at 2060.212 kb on + strandat 2060.212 kb on + strandat 2060.294 kb on + strandat 2060.295 kb on - strandat 2060.319 kb on + strandat 2060.320 kb on - strandat 2060.545 kb on - strand, within ECD_01982at 2060.778 kb on + strand, within ECD_01982at 2060.778 kb on + strand, within ECD_01982at 2060.778 kb on + strand, within ECD_01982at 2061.106 kb on - strand, within ECD_01982at 2061.377 kb on - strand, within ECD_01982

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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2,056,338 + ECD_01980 0.69 -0.4
2,056,443 + ECD_01980 0.72 -0.2
2,056,443 + ECD_01980 0.72 +0.2
2,056,815 + ECD_01980 0.84 -0.7
2,056,816 - ECD_01980 0.84 -0.1
2,057,055 + +0.4
2,057,056 - -0.3
2,057,238 + -0.1
2,057,304 + -1.9
2,057,396 + +0.1
2,057,751 + ECD_01981 0.14 -0.0
2,057,752 - ECD_01981 0.14 +0.2
2,058,010 + ECD_01981 0.23 -1.1
2,058,182 + ECD_01981 0.28 +1.5
2,058,439 - ECD_01981 0.37 +0.9
2,058,724 + ECD_01981 0.46 +0.4
2,058,748 + ECD_01981 0.47 +0.6
2,058,937 - ECD_01981 0.53 -0.5
2,059,543 - ECD_01981 0.73 -0.1
2,059,645 - ECD_01981 0.76 +2.5
2,059,896 + ECD_01981 0.84 +0.9
2,059,896 + ECD_01981 0.84 +0.5
2,059,926 + ECD_01981 0.85 -0.2
2,059,927 - ECD_01981 0.85 -0.1
2,059,930 + ECD_01981 0.85 -0.3
2,059,930 + ECD_01981 0.85 +0.4
2,059,930 + ECD_01981 0.85 +0.6
2,059,930 + ECD_01981 0.85 +0.5
2,059,931 - ECD_01981 0.85 +0.8
2,060,030 - ECD_01981 0.88 -0.0
2,060,042 - ECD_01981 0.89 -0.2
2,060,073 - ECD_01981 0.90 +0.3
2,060,212 + +0.5
2,060,212 + +0.1
2,060,294 + -0.6
2,060,295 - +0.2
2,060,319 + +0.2
2,060,320 - -1.7
2,060,545 - ECD_01982 0.11 +0.7
2,060,778 + ECD_01982 0.28 +1.0
2,060,778 + ECD_01982 0.28 +0.2
2,060,778 + ECD_01982 0.28 +0.4
2,061,106 - ECD_01982 0.51 +0.7
2,061,377 - ECD_01982 0.70 +1.0

Or see this region's nucleotide sequence