Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01980 and ECD_01981 are separated by 0 nucleotides ECD_01981 and ECD_01982 are separated by 0 nucleotides
ECD_01980: ECD_01980 - multidrug efflux system, subunit B, at 2,054,184 to 2,057,306
_01980
ECD_01981: ECD_01981 - multidrug efflux system, subunit C, at 2,057,307 to 2,060,384
_01981
ECD_01982: ECD_01982 - putative citrate/iron-citrate/zinc-citrate efflux transporter, at 2,060,385 to 2,061,800
_01982
Position (kb)
2057
2058
2059
2060
2061 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2056.338 kb on + strand, within ECD_01980 at 2056.443 kb on + strand, within ECD_01980 at 2056.443 kb on + strand, within ECD_01980 at 2056.815 kb on + strand, within ECD_01980 at 2056.816 kb on - strand, within ECD_01980 at 2057.055 kb on + strand at 2057.056 kb on - strand at 2057.238 kb on + strand at 2057.304 kb on + strand at 2057.396 kb on + strand at 2057.751 kb on + strand, within ECD_01981 at 2057.752 kb on - strand, within ECD_01981 at 2058.010 kb on + strand, within ECD_01981 at 2058.182 kb on + strand, within ECD_01981 at 2058.439 kb on - strand, within ECD_01981 at 2058.724 kb on + strand, within ECD_01981 at 2058.748 kb on + strand, within ECD_01981 at 2058.937 kb on - strand, within ECD_01981 at 2059.543 kb on - strand, within ECD_01981 at 2059.645 kb on - strand, within ECD_01981 at 2059.896 kb on + strand, within ECD_01981 at 2059.896 kb on + strand, within ECD_01981 at 2059.926 kb on + strand, within ECD_01981 at 2059.927 kb on - strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.930 kb on + strand, within ECD_01981 at 2059.931 kb on - strand, within ECD_01981 at 2060.030 kb on - strand, within ECD_01981 at 2060.042 kb on - strand, within ECD_01981 at 2060.073 kb on - strand, within ECD_01981 at 2060.212 kb on + strand at 2060.212 kb on + strand at 2060.294 kb on + strand at 2060.295 kb on - strand at 2060.319 kb on + strand at 2060.320 kb on - strand at 2060.545 kb on - strand, within ECD_01982 at 2060.778 kb on + strand, within ECD_01982 at 2060.778 kb on + strand, within ECD_01982 at 2060.778 kb on + strand, within ECD_01982 at 2061.106 kb on - strand, within ECD_01982 at 2061.377 kb on - strand, within ECD_01982
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 2,056,338 + ECD_01980 0.69 -0.4 2,056,443 + ECD_01980 0.72 -0.2 2,056,443 + ECD_01980 0.72 +0.2 2,056,815 + ECD_01980 0.84 -0.7 2,056,816 - ECD_01980 0.84 -0.1 2,057,055 + +0.4 2,057,056 - -0.3 2,057,238 + -0.1 2,057,304 + -1.9 2,057,396 + +0.1 2,057,751 + ECD_01981 0.14 -0.0 2,057,752 - ECD_01981 0.14 +0.2 2,058,010 + ECD_01981 0.23 -1.1 2,058,182 + ECD_01981 0.28 +1.5 2,058,439 - ECD_01981 0.37 +0.9 2,058,724 + ECD_01981 0.46 +0.4 2,058,748 + ECD_01981 0.47 +0.6 2,058,937 - ECD_01981 0.53 -0.5 2,059,543 - ECD_01981 0.73 -0.1 2,059,645 - ECD_01981 0.76 +2.5 2,059,896 + ECD_01981 0.84 +0.9 2,059,896 + ECD_01981 0.84 +0.5 2,059,926 + ECD_01981 0.85 -0.2 2,059,927 - ECD_01981 0.85 -0.1 2,059,930 + ECD_01981 0.85 -0.3 2,059,930 + ECD_01981 0.85 +0.4 2,059,930 + ECD_01981 0.85 +0.6 2,059,930 + ECD_01981 0.85 +0.5 2,059,931 - ECD_01981 0.85 +0.8 2,060,030 - ECD_01981 0.88 -0.0 2,060,042 - ECD_01981 0.89 -0.2 2,060,073 - ECD_01981 0.90 +0.3 2,060,212 + +0.5 2,060,212 + +0.1 2,060,294 + -0.6 2,060,295 - +0.2 2,060,319 + +0.2 2,060,320 - -1.7 2,060,545 - ECD_01982 0.11 +0.7 2,060,778 + ECD_01982 0.28 +1.0 2,060,778 + ECD_01982 0.28 +0.2 2,060,778 + ECD_01982 0.28 +0.4 2,061,106 - ECD_01982 0.51 +0.7 2,061,377 - ECD_01982 0.70 +1.0
Or see this region's nucleotide sequence