Strain Fitness in Escherichia coli BL21 around ECD_01976

Experiment: Laval1259

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01975 and ECD_01976 are separated by 12 nucleotidesECD_01976 and ECD_01977 overlap by 4 nucleotidesECD_01977 and ECD_01978 overlap by 4 nucleotides ECD_01975: ECD_01975 - Hsp70 chaperone family protein, at 2,046,673 to 2,048,025 _01975 ECD_01976: ECD_01976 - protein kinase-related putative non-specific DNA-binding protein, at 2,048,038 to 2,049,978 _01976 ECD_01977: ECD_01977 - ser/thr phosphatase-related protein, at 2,049,975 to 2,050,736 _01977 ECD_01978: ECD_01978 - VMA domain protein, at 2,050,733 to 2,051,392 _01978 Position (kb) 2048 2049 2050Strain fitness (log2 ratio) -2 -1 0 1 2at 2047.554 kb on - strand, within ECD_01975at 2047.573 kb on + strand, within ECD_01975at 2047.573 kb on + strand, within ECD_01975at 2047.579 kb on - strand, within ECD_01975at 2047.883 kb on - strand, within ECD_01975at 2048.050 kb on + strandat 2048.419 kb on - strand, within ECD_01976at 2048.619 kb on - strand, within ECD_01976at 2048.828 kb on - strand, within ECD_01976at 2049.058 kb on - strand, within ECD_01976at 2049.131 kb on - strand, within ECD_01976at 2049.217 kb on + strand, within ECD_01976at 2049.218 kb on - strand, within ECD_01976at 2049.235 kb on - strand, within ECD_01976at 2049.460 kb on + strand, within ECD_01976at 2049.538 kb on - strand, within ECD_01976at 2049.621 kb on - strand, within ECD_01976at 2049.677 kb on + strand, within ECD_01976at 2049.678 kb on - strand, within ECD_01976at 2049.963 kb on - strandat 2049.963 kb on - strandat 2049.963 kb on - strandat 2050.068 kb on + strand, within ECD_01977at 2050.475 kb on + strand, within ECD_01977at 2050.497 kb on - strand, within ECD_01977at 2050.677 kb on + strandat 2050.678 kb on - strandat 2050.844 kb on + strand, within ECD_01978

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1259
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2,047,554 - ECD_01975 0.65 +0.1
2,047,573 + ECD_01975 0.67 +0.0
2,047,573 + ECD_01975 0.67 +1.2
2,047,579 - ECD_01975 0.67 +0.2
2,047,883 - ECD_01975 0.89 +0.1
2,048,050 + -0.5
2,048,419 - ECD_01976 0.20 +0.5
2,048,619 - ECD_01976 0.30 +1.1
2,048,828 - ECD_01976 0.41 -0.0
2,049,058 - ECD_01976 0.53 -0.0
2,049,131 - ECD_01976 0.56 +1.0
2,049,217 + ECD_01976 0.61 +0.2
2,049,218 - ECD_01976 0.61 -0.3
2,049,235 - ECD_01976 0.62 +0.2
2,049,460 + ECD_01976 0.73 +0.1
2,049,538 - ECD_01976 0.77 +0.6
2,049,621 - ECD_01976 0.82 +0.7
2,049,677 + ECD_01976 0.84 +0.4
2,049,678 - ECD_01976 0.84 +0.9
2,049,963 - +0.2
2,049,963 - +0.5
2,049,963 - +0.0
2,050,068 + ECD_01977 0.12 -0.0
2,050,475 + ECD_01977 0.66 +2.0
2,050,497 - ECD_01977 0.69 -0.5
2,050,677 + -0.2
2,050,678 - +0.2
2,050,844 + ECD_01978 0.17 -1.9

Or see this region's nucleotide sequence