Experiment: Laval1259
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01735 and ECD_01736 are separated by 166 nucleotides ECD_01736 and ECD_01737 are separated by 10 nucleotides ECD_01737 and ECD_01738 are separated by 92 nucleotides
ECD_01735: ECD_01735 - protease IV (signal peptide peptidase), at 1,793,213 to 1,795,069
_01735
ECD_01736: ECD_01736 - cytoplasmic L-asparaginase 1, at 1,795,236 to 1,796,252
_01736
ECD_01737: ECD_01737 - nicotinamidase/pyrazinamidase, at 1,796,263 to 1,796,904
_01737
ECD_01738: ECD_01738 - putative MFS sugar transporter, membrane protein, at 1,796,997 to 1,798,355
_01738
Position (kb)
1795
1796
1797 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1794.565 kb on + strand, within ECD_01735 at 1794.667 kb on + strand, within ECD_01735 at 1794.769 kb on + strand, within ECD_01735 at 1795.197 kb on - strand at 1795.226 kb on + strand at 1795.305 kb on + strand at 1795.306 kb on - strand at 1795.308 kb on - strand at 1795.328 kb on - strand at 1795.397 kb on + strand, within ECD_01736 at 1795.521 kb on + strand, within ECD_01736 at 1795.793 kb on + strand, within ECD_01736 at 1796.054 kb on + strand, within ECD_01736 at 1796.251 kb on - strand at 1796.261 kb on + strand at 1796.261 kb on + strand at 1796.262 kb on - strand at 1796.473 kb on - strand, within ECD_01737 at 1796.549 kb on + strand, within ECD_01737 at 1796.549 kb on + strand, within ECD_01737 at 1796.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1259 remove 1,794,565 + ECD_01735 0.73 -0.4 1,794,667 + ECD_01735 0.78 +0.1 1,794,769 + ECD_01735 0.84 -0.6 1,795,197 - -0.1 1,795,226 + -0.2 1,795,305 + +0.4 1,795,306 - -0.5 1,795,308 - -0.4 1,795,328 - +1.3 1,795,397 + ECD_01736 0.16 -0.3 1,795,521 + ECD_01736 0.28 -0.1 1,795,793 + ECD_01736 0.55 -0.3 1,796,054 + ECD_01736 0.80 -1.4 1,796,251 - -1.2 1,796,261 + +0.0 1,796,261 + -0.0 1,796,262 - +0.2 1,796,473 - ECD_01737 0.33 +1.8 1,796,549 + ECD_01737 0.45 -0.4 1,796,549 + ECD_01737 0.45 -0.2 1,796,870 - -1.8
Or see this region's nucleotide sequence